TAMU_GH_TBb016L05f510, TAMU_GH_TBb016L05f510 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTAMU_GH_TBb016L05f510
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
SpeciesGossypium hirsutum
PCR ConditionTm: optimum, 57 ; minimum, 55 ; maximum, 60 ; max difference, 2 ; product size: minimum, 50 bp; optimum, 50 bp; maximum, 100 bp
Max Length50
Publication[view all]
ContactStelly, David M.
CommentKASP assay uses a 3 primer system. Two that are allele specific, one for each SNP base and then 1 common that should not contain any SNP bases.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:54571576..54571676 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:53195901..53196001 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:47901416..47901515 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
At_chr11chromosomeAt_chr11:57004086..57004186 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:52430029..52430129 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:53516321..53516421 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:54493383..54493483 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:54219510..54219610 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:53933370..53933470 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:53249649..53249749 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:55472449..55472549 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:54107114..54107214 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:55515922..55516022 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D05chromosomeD05:56267223..56267323 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:49854492..49854592 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:35520431..35520531 +Gossypium aridum (D4) genome ISU_v1n/a
Sequence
>TAMU_GH_TBb016L05f510 ID=TAMU_GH_TBb016L05f510; Name=TAMU_GH_TBb016L05f510; organism=Gossypium hirsutum; type=genetic_marker; length=105bp
TGTGTTGGACTGTGTTGGGTGAAAGGAAAGTTTTGGGTCCTAGGTTGGTT
[C/T]AAGAGACTGAGGGAAAAGTTAAACTGATTCAGAACACACTAAAAA
CAGCT