TAMU_GH_TBb099J02r656, TAMU_GH_TBb099J02r656 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTAMU_GH_TBb099J02r656
dbSNP IDN/A
TypeSNP
SNP AllelesC/A
SpeciesGossypium hirsutum
PCR ConditionTm: optimum, 57 ; minimum, 55 ; maximum, 60 ; max difference, 2 ; product size: minimum, 50 bp; optimum, 50 bp; maximum, 100 bp
Max Length50
Publication[view all]
ContactStelly, David M.
CommentKASP assay uses a 3 primer system. Two that are allele specific, one for each SNP base and then 1 common that should not contain any SNP bases.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A08chromosomeA08:42611327..42611427 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018209.1chromosomeCM018209.1:28592076..28592176 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:43615815..43615915 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold2383.1supercontigscaffold2383.1:14393..14493 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A08chromosomeA08:27882243..27882343 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Scaffold2204supercontigScaffold2204:370877..370977 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:29598560..29598660 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:29989448..29989548 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:46523359..46523459 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A08chromosomeGbar_A08:29312585..29312685 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:28504612..28504712 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:28769242..28769342 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017643.1chromosomeCM017643.1:30705275..30705375 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:28858924..28859024 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:30762270..30762370 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:32303693..32303793 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:41719916..41720016 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Sequence
>TAMU_GH_TBb099J02r656 ID=TAMU_GH_TBb099J02r656; Name=TAMU_GH_TBb099J02r656; organism=Gossypium hirsutum; type=genetic_marker; length=105bp
TTGCTTTGCAAGCAATGAATACTTGGTTAATGTTATCTGATGATGGTTCA
[A/C]TTATAGTTGAATTAAAAGGTAGACTGATGTTCTTGCAGCAGATTA
GTGAA