TAMU_GH_TBb047H13r591, TAMU_GH_TBb047H13r591 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTAMU_GH_TBb047H13r591
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
SpeciesGossypium hirsutum
PCR ConditionTm: optimum, 57 ; minimum, 55 ; maximum, 60 ; max difference, 2 ; product size: minimum, 50 bp; optimum, 50 bp; maximum, 100 bp
Max Length50
Publication[view all]
ContactStelly, David M.
CommentKASP assay uses a 3 primer system. Two that are allele specific, one for each SNP base and then 1 common that should not contain any SNP bases.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:53934623..53934723 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D12chromosomeD12:52416641..52416740 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D07chromosomeD07:45795778..45795878 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:49103648..49103747 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018221.1chromosomeCM018221.1:44463176..44463276 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:27686478..27686578 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_07chromosomeD5_07:40551946..40552046 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_12chromosomeD10_12:44502514..44502614 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_01chromosomeD10_01:57255125..57255225 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr8chromosomeDt_chr8:45471444..45471543 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr10chromosomeDt_chr10:46973266..46973366 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr1chromosomeDt_chr1:76879825..76879925 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:50146326..50146426 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D12chromosomeD12:48658836..48658935 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D07chromosomeD07:43211127..43211227 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:52499531..52499631 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D12chromosomeGhir_D12:51500856..51500955 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D07chromosomeGhir_D07:47455765..47455865 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:51771392..51771492 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:50471738..50471837 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:46774909..46775009 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:51720755..51720855 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:51615710..51615809 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:46801728..46801828 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:49010168..49010268 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D12chromosomeD12:49396563..49396662 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D07chromosomeD07:43314990..43315090 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:45435397..45435497 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D12chromosomeGbar_D12:48371935..48372034 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:49580940..49581039 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D07chromosomeD07:45758782..45758882 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:49690374..49690474 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017634.1chromosomeCM017634.1:49468500..49468599 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017629.1chromosomeCM017629.1:44903991..44904091 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:52437455..52437555 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017655.1chromosomeCM017655.1:45945824..45945924 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:50061380..50061479 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017707.1chromosomeCM017707.1:45410519..45410619 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:52389541..52389641 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D12chromosomeD12:51578013..51578112 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D07chromosomeD07:47332863..47332963 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:11518631..11518731 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:29772696..29772796 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr03chromosomeChr03:33071936..33072036 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Sequence
>TAMU_GH_TBb047H13r591 ID=TAMU_GH_TBb047H13r591; Name=TAMU_GH_TBb047H13r591; organism=Gossypium hirsutum; type=genetic_marker; length=105bp
TACCCTGTTTGGACAACCCTTATACATCAATTTGGACAACATTTATATAC
[C/T]AAACTAGACAGCATTTTCACACCAAAATTTGGACAGCATATATAC
AACAA