TAMU_GH_TBh103A03r594, TAMU_GH_TBh103A03r594 (genetic_marker) Gossypium longicalyx

Marker Overview
NameTAMU_GH_TBh103A03r594
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
SpeciesGossypium longicalyx
PCR ConditionTm: optimum, 57 ; minimum, 55 ; maximum, 60 ; max difference, 2 ; product size: minimum, 50 bp; optimum, 50 bp; maximum, 100 bp
Max Length50
Publication[view all]
ContactStelly, David M.
CommentKASP assay uses a 3 primer system. Two that are allele specific, one for each SNP base and then 1 common that should not contain any SNP bases.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018207.1chromosomeCM018207.1:72818503..72818603 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
tig00020410_CRI-A2_v1.0.a1chromosometig00020410_CRI-A2_v1.0.a1:29080..29180 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr10chromosomeAt_chr10:39340033..39340133 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A06chromosomeA06:64956260..64956360 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A06chromosomeGhir_A06:77411825..77411925 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A06chromosomeA06:79922418..79922518 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:78457639..78457739 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:76225389..76225489 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A06chromosomeGbar_A06:71747622..71747722 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A06chromosomeA06:74638189..74638289 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017615.1chromosomeCM017615.1:76861422..76861522 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017641.1chromosomeCM017641.1:79246212..79246312 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017693.1chromosomeCM017693.1:74660605..74660705 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A06chromosomeA06:80213480..80213580 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:79096484..79096584 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
F06chromosomeF06:64368860..64368960 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>TAMU_GH_TBh103A03r594 ID=TAMU_GH_TBh103A03r594; Name=TAMU_GH_TBh103A03r594; organism=Gossypium longicalyx; type=genetic_marker; length=105bp
ATATTTGGACAAGTTTGTTGTTGTGTTTATTGATGATATTCTAATATATT
[C/T]GAGAGATGAGACAAAACATGTCGAGCACTTGAGAACTATTTTGCA
GACTT