TAMU_GH_TBh011E23r304, TAMU_GH_TBh011E23r304 (genetic_marker) Gossypium longicalyx

Marker Overview
NameTAMU_GH_TBh011E23r304
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
SpeciesGossypium longicalyx
PCR ConditionTm: optimum, 57 ; minimum, 55 ; maximum, 60 ; max difference, 2 ; product size: minimum, 50 bp; optimum, 50 bp; maximum, 100 bp
Max Length50
Publication[view all]
ContactStelly, David M.
CommentKASP assay uses a 3 primer system. Two that are allele specific, one for each SNP base and then 1 common that should not contain any SNP bases.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018222.1chromosomeCM018222.1:6841890..6841990 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:7147920..7148020 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:6590421..6590521 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:8107321..8107421 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:55711814..55711914 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016621.1chromosomeCM016621.1:133940991..133941091 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr4chromosomeDt_chr4:29714284..29714384 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr4chromosomeAt_chr4:85877397..85877497 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:6826132..6826232 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:6878908..6879008 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:6873088..6873188 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:7329803..7329903 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:6569729..6569829 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:7212631..7212731 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:6320766..6320866 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:7688025..7688125 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:6925223..6925323 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A08chromosomeA08:7242616..7242716 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:6969490..6969590 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:7530387..7530487 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:7065441..7065541 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:7261002..7261102 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:7077652..7077752 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:7412237..7412337 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:7306989..7307089 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:7804590..7804690 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:6933001..6933101 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:7339313..7339413 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:7048475..7048575 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:7767930..7768030 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:8271938..8272038 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:8573232..8573332 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:6592833..6592933 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:8706085..8706185 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:6796892..6796992 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:5907185..5907285 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:5603881..5603981 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:6780018..6780118 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:5781223..5781323 -Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:4622540..4622640 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr04chromosomeChr04:5632685..5632785 -Gossypium lobatum (D7) genome ISU_v1n/a
E08chromosomeE08:10267270..10267370 -Gossypium stocksii (E1) genome NSF_v1n/a
F08chromosomeF08:6824683..6824783 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr08chromosomeChr08:187342885..187342985 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>TAMU_GH_TBh011E23r304 ID=TAMU_GH_TBh011E23r304; Name=TAMU_GH_TBh011E23r304; organism=Gossypium longicalyx; type=genetic_marker; length=105bp
CCATCAGGCTGCTTCCAAAACTCACTTTCCAAATGCAAAGGCCGAGGACT
[A/T]TGTAATTGGCTGGTAACCAAGACTTGGTGGTCTCTTTCACCAACT
TTGCC