TAMU_GH_TBb096A22f163, TAMU_GH_TBb096A22f163 (genetic_marker) Gossypium longicalyx

Marker Overview
NameTAMU_GH_TBb096A22f163
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
SpeciesGossypium longicalyx
PCR ConditionTm: optimum, 57 ; minimum, 55 ; maximum, 60 ; max difference, 2 ; product size: minimum, 50 bp; optimum, 50 bp; maximum, 100 bp
Max Length50
Publication[view all]
ContactStelly, David M.
CommentKASP assay uses a 3 primer system. Two that are allele specific, one for each SNP base and then 1 common that should not contain any SNP bases.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:36256047..36256146 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D12chromosomeD12:51224452..51224550 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A12chromosomeA12:88204679..88204779 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:34264296..34264395 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018226.1chromosomeCM018226.1:47830227..47830325 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018213.1chromosomeCM018213.1:85223335..85223435 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:11775437..11775535 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_10chromosomeD5_10:28555079..28555178 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:15140706..15140806 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:49591875..49591974 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_13chromosomeD10_13:27038580..27038679 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_12chromosomeD10_12:42842107..42842205 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016625.1chromosomeCM016625.1:19549062..19549162 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr11chromosomeDt_chr11:37585519..37585618 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr8chromosomeDt_chr8:44461607..44461705 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr13chromosomeDt_chr13:42328096..42328196 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:34882136..34882235 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D12chromosomeD12:47445209..47445307 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A12chromosomeA12:74282968..74283068 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:34797471..34797570 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D12chromosomeGhir_D12:50271238..50271336 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:92877645..92877745 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:33883942..33884041 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:49288264..49288362 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:93509275..93509375 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:34735583..34735682 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:50339922..50340020 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:90969655..90969755 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:34959238..34959337 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D12chromosomeD12:48138579..48138677 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A12chromosomeA12:88119438..88119538 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:34113189..34113288 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D12chromosomeGbar_D12:47098729..47098827 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:87833197..87833297 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:34679476..34679575 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D12chromosomeD12:48314881..48314979 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A12chromosomeA12:87189540..87189640 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:33797754..33797853 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017634.1chromosomeCM017634.1:48202278..48202376 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017621.1chromosomeCM017621.1:88424895..88424995 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:35307622..35307721 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017660.1chromosomeCM017660.1:51033481..51033579 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:91880039..91880139 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:34835706..34835805 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017712.1chromosomeCM017712.1:48787789..48787887 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:87682034..87682134 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:35170921..35171020 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D12chromosomeD12:50347015..50347113 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A12chromosomeA12:94412770..94412870 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:94930628..94930728 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:102203640..102203740 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:34105059..34105158 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr12chromosomeChr12:46003806..46003904 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:74270750..74270850 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:53347758..53347857 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr02chromosomeChr02:9166201..9166300 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr10chromosomeChr10:49308248..49308347 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr08chromosomeChr08:46208426..46208524 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr11chromosomeChr11:35004570..35004669 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:9201288..9201386 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:47481795..47481893 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:25704669..25704768 -Gossypium gossypioides (D6) genome ISU_v1n/a
F12chromosomeF12:78149340..78149440 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr12chromosomeChr12:8131038..8131138 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>TAMU_GH_TBb096A22f163 ID=TAMU_GH_TBb096A22f163; Name=TAMU_GH_TBb096A22f163; organism=Gossypium longicalyx; type=genetic_marker; length=105bp
CTTGGTGGGTGTTGAGTTGTTAGATCAAAGAAAAAGAAACAAAATCTGGG
[C/T]GAAGAAGAAGAACAATGGGAAAAAGGAGAGAAACAGGAAAAAAGG
ATCTT