TAMU_GH_TBb060G07f242, TAMU_GH_TBb060G07f242 (genetic_marker) Gossypium longicalyx

Marker Overview
NameTAMU_GH_TBb060G07f242
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
SpeciesGossypium longicalyx
PCR ConditionTm: optimum, 57 ; minimum, 55 ; maximum, 60 ; max difference, 2 ; product size: minimum, 50 bp; optimum, 50 bp; maximum, 100 bp
Max Length50
Publication[view all]
ContactStelly, David M.
CommentKASP assay uses a 3 primer system. Two that are allele specific, one for each SNP base and then 1 common that should not contain any SNP bases.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:107381860..107381960 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:104734090..104734190 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:134331856..134331956 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:134320847..134320947 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016616.1chromosomeCM016616.1:1921204..1921304 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold190.1supercontigscaffold190.1:568492..568592 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:98905149..98905249 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:111675222..111675322 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:110286816..110286916 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:108781007..108781107 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:104052293..104052393 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A03chromosomeGbar_A03:103944712..103944812 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:106272439..106272539 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:105622914..105623014 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:112762736..112762836 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:106746260..106746360 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:112369707..112369807 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:1203524..1203624 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:1385811..1385911 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:1374798..1374898 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
F03chromosomeF03:109028790..109028890 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr03chromosomeChr03:1413353..1413453 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>TAMU_GH_TBb060G07f242 ID=TAMU_GH_TBb060G07f242; Name=TAMU_GH_TBb060G07f242; organism=Gossypium longicalyx; type=genetic_marker; length=105bp
AAATTTTCAAATACTCTAAACTCCAGTCATGTATATGGAAACAAATATAC
[A/G]AATGACTGAATGTAAAATCAAATAGCTTTTTGACCATTTTGAGAT
AAGAG