TAMU_GH_TBh119I15f326, TAMU_GH_TBh119I15f326 (genetic_marker) Gossypium barbadense

Marker Overview
NameTAMU_GH_TBh119I15f326
dbSNP IDN/A
TypeSNP
SNP AllelesG/A
SpeciesGossypium barbadense
PCR ConditionTm: optimum, 57 ; minimum, 55 ; maximum, 60 ; max difference, 2 ; product size: minimum, 50 bp; optimum, 50 bp; maximum, 100 bp
Max Length50
Publication[view all]
ContactStelly, David M.
CommentKASP assay uses a 3 primer system. Two that are allele specific, one for each SNP base and then 1 common that should not contain any SNP bases.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018213.1chromosomeCM018213.1:92868805..92868905 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_12chromosomeKI_12:4947087..4947187 -Gossypioides kirkii genome ISU_v3n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:6881573..6881673 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016625.1chromosomeCM016625.1:8634298..8634398 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr8chromosomeDt_chr8:49682465..49682565 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A12chromosomeA12:81394914..81395014 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A12chromosomeGhir_A12:100649639..100649739 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A12chromosomeA12:100962114..100962214 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:98802110..98802210 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:95716793..95716893 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A12chromosomeGbar_A12:95612429..95612529 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A12chromosomeA12:94850041..94850141 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:96009579..96009679 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017647.1chromosomeCM017647.1:99673136..99673236 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017699.1chromosomeCM017699.1:95202031..95202131 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A12chromosomeA12:102329888..102329988 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:103447227..103447327 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:110391055..110391155 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_12chromosomeB_12:81692478..81692578 +Gossypium anomalum (B1) genome NSF_v1n/a
chr08chromosomechr08:40230896..40230996 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr08_5108615chromosomeChr08_5108615:693..793 +Gossypium harknessii (D2-2) genome ISU_v1n/a
E12chromosomeE12:106946948..106947048 +Gossypium stocksii (E1) genome NSF_v1n/a
F12chromosomeF12:85373224..85373324 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr12chromosomeChr12:164201471..164201571 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>TAMU_GH_TBh119I15f326 ID=TAMU_GH_TBh119I15f326; Name=TAMU_GH_TBh119I15f326; organism=Gossypium barbadense; type=genetic_marker; length=105bp
AACCTAGATGTATTGGGCTTGGGCCTCTCACTTTAAGGCGCTTTGGACCT
[A/G]TCTCTGAAGGAGAATCCCTCTTGCGCTTTCCTAACTCCTGCTGGA
ACCTA