TAMU_GH_TBb018G18f282, TAMU_GH_TBb018G18f282 (genetic_marker) Gossypium longicalyx

Marker Overview
NameTAMU_GH_TBb018G18f282
dbSNP IDN/A
TypeSNP
SNP AllelesC/G
SpeciesGossypium longicalyx
PCR ConditionTm: optimum, 57 ; minimum, 55 ; maximum, 60 ; max difference, 2 ; product size: minimum, 50 bp; optimum, 50 bp; maximum, 100 bp
Max Length50
Publication[view all]
ContactStelly, David M.
CommentKASP assay uses a 3 primer system. Two that are allele specific, one for each SNP base and then 1 common that should not contain any SNP bases.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D03chromosomeD03:35080652..35080752 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A03chromosomeA03:23329087..23329188 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018217.1chromosomeCM018217.1:35735506..35735606 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018204.1chromosomeCM018204.1:22346554..22346655 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:29716778..29716878 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:89137758..89137859 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_02chromosomeD10_02:34203225..34203325 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016615.1chromosomeCM016615.1:80876713..80876814 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr12chromosomeAt_chr12:88296080..88296181 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr3chromosomeDt_chr3:16393698..16393798 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D03chromosomeD03:29216671..29216771 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A03chromosomeA03:21638126..21638227 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D03chromosomeGhir_D03:35138373..35138473 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:23811892..23811993 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D03chromosomeD03:36734895..36734995 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:22724552..22724653 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:36077122..36077222 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:23462870..23462971 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:35502795..35502895 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D03chromosomeGbar_D03:34149614..34149714 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:22265266..22265367 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D03chromosomeD03:36729075..36729175 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A03chromosomeA03:22299553..22299654 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017625.1chromosomeCM017625.1:35121997..35122097 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017612.1chromosomeCM017612.1:22706054..22706155 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017651.1chromosomeCM017651.1:39015897..39015997 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017638.1chromosomeCM017638.1:23322838..23322939 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017703.1chromosomeCM017703.1:36676450..36676550 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017690.1chromosomeCM017690.1:22473617..22473718 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D03chromosomeD03:37151042..37151142 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A03chromosomeA03:24031822..24031923 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:18173220..18173321 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:95108606..95108707 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr02chromosomeChr02:31802572..31802672 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_04chromosomeB_04:21094645..21094746 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr03chromosomeChr03:33308909..33309009 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr03chromosomechr03:13081829..13081929 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_03chromosomeChr_03:10566212..10566312 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr03chromosomeChr03:35085936..35086036 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr03chromosomeChr03:10962008..10962108 -Gossypium aridum (D4) genome ISU_v1n/a
Chr03chromosomeChr03:9468688..9468788 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr03chromosomeChr03:11660795..11660895 -Gossypium lobatum (D7) genome ISU_v1n/a
F02chromosomeF02:56771955..56772056 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>TAMU_GH_TBb018G18f282 ID=TAMU_GH_TBb018G18f282; Name=TAMU_GH_TBb018G18f282; organism=Gossypium longicalyx; type=genetic_marker; length=105bp
AATAGGAGAGATAGGTTGCCCCCAAAAACTTTAAAAAACCTATCAGATTT
[C/G]CTTTGCGGTTTAATCATGTTGTTCTAGAGCTCTCTTTTGCCTAGA
CAAAG