TAMU_GH_TBh113L04f312, TAMU_GH_TBh113L04f312 (genetic_marker) Gossypium barbadense

Marker Overview
NameTAMU_GH_TBh113L04f312
dbSNP IDN/A
TypeSNP
SNP AllelesT/A
SpeciesGossypium barbadense
PCR ConditionTm: optimum, 57 ; minimum, 55 ; maximum, 60 ; max difference, 2 ; product size: minimum, 50 bp; optimum, 50 bp; maximum, 100 bp
Max Length50
Publication[view all]
ContactStelly, David M.
CommentKASP assay uses a 3 primer system. Two that are allele specific, one for each SNP base and then 1 common that should not contain any SNP bases.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018213.1chromosomeCM018213.1:77005018..77005118 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:24093903..24094003 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold526.1supercontigscaffold526.1:404768..404868 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A12chromosomeA12:66107350..66107450 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A12chromosomeGhir_A12:84707202..84707302 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A12chromosomeA12:85732025..85732125 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:82801300..82801400 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:79947965..79948065 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A12chromosomeGbar_A12:79441618..79441718 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A12chromosomeA12:78975774..78975874 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:80553355..80553455 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017647.1chromosomeCM017647.1:83514929..83515029 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017699.1chromosomeCM017699.1:79366130..79366230 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A12chromosomeA12:86118877..86118977 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:86049897..86049997 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:93271658..93271758 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_12chromosomeB_12:66316166..66316266 -Gossypium anomalum (B1) genome NSF_v1n/a
F12chromosomeF12:70907786..70907886 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>TAMU_GH_TBh113L04f312 ID=TAMU_GH_TBh113L04f312; Name=TAMU_GH_TBh113L04f312; organism=Gossypium barbadense; type=genetic_marker; length=105bp
TGAGATACTAAAATTTGGGCTCTTCCCCCTGCCTTATCATAGACGTGTCA
[A/T]AGTATTCAAGCAATTATTAGCAGCATGCTTTTAAATGGTTTCATG
GTAAA