TAMU_GH_TBh029C02f394, TAMU_GH_TBh029C02f394 (genetic_marker) Gossypium barbadense

Marker Overview
NameTAMU_GH_TBh029C02f394
dbSNP IDN/A
TypeSNP
SNP AllelesT/G
SpeciesGossypium barbadense
PCR ConditionTm: optimum, 57 ; minimum, 55 ; maximum, 60 ; max difference, 2 ; product size: minimum, 50 bp; optimum, 50 bp; maximum, 100 bp
Max Length50
Publication[view all]
ContactStelly, David M.
CommentKASP assay uses a 3 primer system. Two that are allele specific, one for each SNP base and then 1 common that should not contain any SNP bases.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018226.1chromosomeCM018226.1:36143376..36143476 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:23139759..23139859 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr8chromosomeDt_chr8:23432282..23432382 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:35417310..35417410 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:38566692..38566792 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:37852418..37852518 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:38531696..38531796 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:36309828..36309928 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:35544972..35545072 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:36756825..36756925 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:36543870..36543970 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:38951617..38951717 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:37256590..37256690 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:38603731..38603831 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:34626602..34626701 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:34841505..34841605 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr08chromosomeChr08:35992545..35992645 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Sequence
>TAMU_GH_TBh029C02f394 ID=TAMU_GH_TBh029C02f394; Name=TAMU_GH_TBh029C02f394; organism=Gossypium barbadense; type=genetic_marker; length=105bp
GAAAAATAAAAAATTACAGAATAGTCCCTAAACTTCTGCAACTATTACAA
[G/T]TTAATCCAGGTAAGTTCGTATGGTTTAAAATTTAACATCTATATG
AATTA