TAMU_GH_TBb054A19r476, TAMU_GH_TBb054A19r476 (genetic_marker) Gossypium barbadense

Marker Overview
NameTAMU_GH_TBb054A19r476
dbSNP IDN/A
TypeSNP
SNP AllelesC/G
SpeciesGossypium barbadense
PCR ConditionTm: optimum, 57 ; minimum, 55 ; maximum, 60 ; max difference, 2 ; product size: minimum, 50 bp; optimum, 50 bp; maximum, 100 bp
Max Length50
Publication[view all]
ContactStelly, David M.
CommentKASP assay uses a 3 primer system. Two that are allele specific, one for each SNP base and then 1 common that should not contain any SNP bases.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:15436417..15436517 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D12chromosomeD12:15399457..15399557 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:27220631..27220731 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Dt_chr8chromosomeDt_chr8:27602322..27602422 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr8chromosomeDt_chr8:27564973..27565073 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:15475047..15475147 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D12chromosomeD12:15438015..15438115 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold97685supercontigscaffold97685:390..490 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:29300513..29300613 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D12chromosomeGhir_D12:29337425..29337525 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:28677921..28678021 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:28660606..28660706 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:29339386..29339486 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:29376344..29376444 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:27284353..27284453 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D12chromosomeD12:27305960..27306060 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:16066418..16066518 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:27782026..27782126 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:16095196..16095296 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017634.1chromosomeCM017634.1:16058145..16058245 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:28470340..28470440 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017660.1chromosomeCM017660.1:28423681..28423780 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:28293614..28293714 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:29196278..29196378 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D12chromosomeD12:29071514..29071614 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Sequence
>TAMU_GH_TBb054A19r476 ID=TAMU_GH_TBb054A19r476; Name=TAMU_GH_TBb054A19r476; organism=Gossypium barbadense; type=genetic_marker; length=105bp
AACACACACAAATCTACATCGAACAAGTCATCAATTCGCGGGAAAGGATA
[C/G]TTATTCTTAATAATCAGCTTGTTCAACTGGCTATAGTCTATACAC
ATCTG