TAMU_GH_TBb029K08r40, TAMU_GH_TBb029K08r40 (genetic_marker) Gossypium barbadense

Marker Overview
NameTAMU_GH_TBb029K08r40
dbSNP IDN/A
TypeSNP
SNP AllelesG/A
SpeciesGossypium barbadense
PCR ConditionTm: optimum, 57 ; minimum, 55 ; maximum, 60 ; max difference, 2 ; product size: minimum, 50 bp; optimum, 50 bp; maximum, 100 bp
Max Length50
Publication[view all]
ContactStelly, David M.
CommentKASP assay uses a 3 primer system. Two that are allele specific, one for each SNP base and then 1 common that should not contain any SNP bases.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A12chromosomeA12:15650509..15650598 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018213.1chromosomeCM018213.1:14819536..14819625 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:91299149..91299238 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr8chromosomeAt_chr8:34874528..34874617 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A12chromosomeA12:14995951..14996040 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A12chromosomeGhir_A12:15281593..15281682 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A12chromosomeA12:14644890..14644979 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:15215794..15215883 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:15217846..15217935 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A12chromosomeGbar_A12:15090841..15090930 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A12chromosomeA12:14741325..14741414 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:14714984..14715073 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017647.1chromosomeCM017647.1:15329930..15330019 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017699.1chromosomeCM017699.1:14757098..14757187 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A12chromosomeA12:15326420..15326509 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:15627879..15627968 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:15361620..15361709 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Sequence
>TAMU_GH_TBb029K08r40 ID=TAMU_GH_TBb029K08r40; Name=TAMU_GH_TBb029K08r40; organism=Gossypium barbadense; type=genetic_marker; length=94bp
TAAATGTGTTGATAATGATGAAGTTAATAGTATAGCACA[A/G]ACTTCT
GAACATGGGATGTATAGTAATGTCCCAATTCCTTCGGCTCAAGA