g.arboreum_cottongen_reftransV1_0000642, g.arboreum_cottongen_reftransV1_0000642 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0000642
Unique Nameg.arboreum_cottongen_reftransV1_0000642
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length560
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr4chromosomeg.arboreum_cottongen_reftransV1_0000642:1..559 .
Chr4:50655263..50655821 -
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000642 vs. ExPASy TrEMBL
Match: A0A0D2T5Q8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G155000 PE=4 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.647e-38
Identity = 178/185 (96.22%), Postives = 181/185 (97.84%), Query Frame = 3 
Query:    3 SNHASGPQQQAYAMRLAKERXXXXXXXXXXXXXXXXXXXXFTASSTLLSHVQPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQQKHHLAPHGLGRSPQTGASGLNNQIGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA 557
            SNHASGPQQQAYAMR+AKERQMQQQRLMQQQQPQQQQQKQFTASS L+SHVQPQTQLPISSSLQNSSQIQSQASTQPVSLP PSSPMTPMS QHQQKHHLAPHGLGR+PQTGASGLNNQIGKQRQRQPQQQQQQFQQSGRHHPQQRQ PQSQQQTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA
Sbjct: 1484 SNHASGPQQQAYAMRVAKERQMQQQRLMQQQQPQQQQQKQFTASSALMSHVQPQTQLPISSSLQNSSQIQSQASTQPVSLPAPSSPMTPMSLQHQQKHHLAPHGLGRNPQTGASGLNNQIGKQRQRQPQQQQQQFQQSGRHHPQQRQPPQSQQQTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA 1668
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000642 vs. ExPASy TrEMBL
Match: A0A0D2NZS2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G155000 PE=4 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.670e-38
Identity = 178/185 (96.22%), Postives = 181/185 (97.84%), Query Frame = 3 
Query:    3 SNHASGPQQQAYAMRLAKERXXXXXXXXXXXXXXXXXXXXFTASSTLLSHVQPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQQKHHLAPHGLGRSPQTGASGLNNQIGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA 557
            SNHASGPQQQAYAMR+AKERQMQQQRLMQQQQPQQQQQKQFTASS L+SHVQPQTQLPISSSLQNSSQIQSQASTQPVSLP PSSPMTPMS QHQQKHHLAPHGLGR+PQTGASGLNNQIGKQRQRQPQQQQQQFQQSGRHHPQQRQ PQSQQQTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA
Sbjct: 1466 SNHASGPQQQAYAMRVAKERQMQQQRLMQQQQPQQQQQKQFTASSALMSHVQPQTQLPISSSLQNSSQIQSQASTQPVSLPAPSSPMTPMSLQHQQKHHLAPHGLGRNPQTGASGLNNQIGKQRQRQPQQQQQQFQQSGRHHPQQRQPPQSQQQTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA 1650
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000642 vs. ExPASy TrEMBL
Match: A0A0D2S3Q8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G155000 PE=4 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.763e-38
Identity = 178/185 (96.22%), Postives = 181/185 (97.84%), Query Frame = 3 
Query:    3 SNHASGPQQQAYAMRLAKERXXXXXXXXXXXXXXXXXXXXFTASSTLLSHVQPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQQKHHLAPHGLGRSPQTGASGLNNQIGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA 557
            SNHASGPQQQAYAMR+AKERQMQQQRLMQQQQPQQQQQKQFTASS L+SHVQPQTQLPISSSLQNSSQIQSQASTQPVSLP PSSPMTPMS QHQQKHHLAPHGLGR+PQTGASGLNNQIGKQRQRQPQQQQQQFQQSGRHHPQQRQ PQSQQQTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA
Sbjct: 1488 SNHASGPQQQAYAMRVAKERQMQQQRLMQQQQPQQQQQKQFTASSALMSHVQPQTQLPISSSLQNSSQIQSQASTQPVSLPAPSSPMTPMSLQHQQKHHLAPHGLGRNPQTGASGLNNQIGKQRQRQPQQQQQQFQQSGRHHPQQRQPPQSQQQTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA 1672
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000642 vs. ExPASy TrEMBL
Match: A0A0D2T5Q1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G155000 PE=4 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.805e-38
Identity = 178/185 (96.22%), Postives = 181/185 (97.84%), Query Frame = 3 
Query:    3 SNHASGPQQQAYAMRLAKERXXXXXXXXXXXXXXXXXXXXFTASSTLLSHVQPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQQKHHLAPHGLGRSPQTGASGLNNQIGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA 557
            SNHASGPQQQAYAMR+AKERQMQQQRLMQQQQPQQQQQKQFTASS L+SHVQPQTQLPISSSLQNSSQIQSQASTQPVSLP PSSPMTPMS QHQQKHHLAPHGLGR+PQTGASGLNNQIGKQRQRQPQQQQQQFQQSGRHHPQQRQ PQSQQQTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA
Sbjct: 1470 SNHASGPQQQAYAMRVAKERQMQQQRLMQQQQPQQQQQKQFTASSALMSHVQPQTQLPISSSLQNSSQIQSQASTQPVSLPAPSSPMTPMSLQHQQKHHLAPHGLGRNPQTGASGLNNQIGKQRQRQPQQQQQQFQQSGRHHPQQRQPPQSQQQTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA 1654
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000642 vs. ExPASy TrEMBL
Match: A0A0D2S3R7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G155000 PE=4 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.944e-38
Identity = 178/185 (96.22%), Postives = 181/185 (97.84%), Query Frame = 3 
Query:    3 SNHASGPQQQAYAMRLAKERXXXXXXXXXXXXXXXXXXXXFTASSTLLSHVQPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQQKHHLAPHGLGRSPQTGASGLNNQIGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA 557
            SNHASGPQQQAYAMR+AKERQMQQQRLMQQQQPQQQQQKQFTASS L+SHVQPQTQLPISSSLQNSSQIQSQASTQPVSLP PSSPMTPMS QHQQKHHLAPHGLGR+PQTGASGLNNQIGKQRQRQPQQQQQQFQQSGRHHPQQRQ PQSQQQTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA
Sbjct: 1495 SNHASGPQQQAYAMRVAKERQMQQQRLMQQQQPQQQQQKQFTASSALMSHVQPQTQLPISSSLQNSSQIQSQASTQPVSLPAPSSPMTPMSLQHQQKHHLAPHGLGRNPQTGASGLNNQIGKQRQRQPQQQQQQFQQSGRHHPQQRQPPQSQQQTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA 1679
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000642 vs. ExPASy TrEMBL
Match: A0A0D2SAV7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G155000 PE=4 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.030e-38
Identity = 178/185 (96.22%), Postives = 181/185 (97.84%), Query Frame = 3 
Query:    3 SNHASGPQQQAYAMRLAKERXXXXXXXXXXXXXXXXXXXXFTASSTLLSHVQPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQQKHHLAPHGLGRSPQTGASGLNNQIGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA 557
            SNHASGPQQQAYAMR+AKERQMQQQRLMQQQQPQQQQQKQFTASS L+SHVQPQTQLPISSSLQNSSQIQSQASTQPVSLP PSSPMTPMS QHQQKHHLAPHGLGR+PQTGASGLNNQIGKQRQRQPQQQQQQFQQSGRHHPQQRQ PQSQQQTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA
Sbjct: 1513 SNHASGPQQQAYAMRVAKERQMQQQRLMQQQQPQQQQQKQFTASSALMSHVQPQTQLPISSSLQNSSQIQSQASTQPVSLPAPSSPMTPMSLQHQQKHHLAPHGLGRNPQTGASGLNNQIGKQRQRQPQQQQQQFQQSGRHHPQQRQPPQSQQQTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA 1697
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000642 vs. ExPASy TrEMBL
Match: A0A0D2SAU2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G155000 PE=4 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.032e-38
Identity = 178/185 (96.22%), Postives = 181/185 (97.84%), Query Frame = 3 
Query:    3 SNHASGPQQQAYAMRLAKERXXXXXXXXXXXXXXXXXXXXFTASSTLLSHVQPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQQKHHLAPHGLGRSPQTGASGLNNQIGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA 557
            SNHASGPQQQAYAMR+AKERQMQQQRLMQQQQPQQQQQKQFTASS L+SHVQPQTQLPISSSLQNSSQIQSQASTQPVSLP PSSPMTPMS QHQQKHHLAPHGLGR+PQTGASGLNNQIGKQRQRQPQQQQQQFQQSGRHHPQQRQ PQSQQQTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA
Sbjct: 1517 SNHASGPQQQAYAMRVAKERQMQQQRLMQQQQPQQQQQKQFTASSALMSHVQPQTQLPISSSLQNSSQIQSQASTQPVSLPAPSSPMTPMSLQHQQKHHLAPHGLGRNPQTGASGLNNQIGKQRQRQPQQQQQQFQQSGRHHPQQRQPPQSQQQTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA 1701
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000642 vs. ExPASy TrEMBL
Match: A0A0D2NZR0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G155000 PE=4 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.039e-38
Identity = 178/185 (96.22%), Postives = 181/185 (97.84%), Query Frame = 3 
Query:    3 SNHASGPQQQAYAMRLAKERXXXXXXXXXXXXXXXXXXXXFTASSTLLSHVQPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQQKHHLAPHGLGRSPQTGASGLNNQIGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA 557
            SNHASGPQQQAYAMR+AKERQMQQQRLMQQQQPQQQQQKQFTASS L+SHVQPQTQLPISSSLQNSSQIQSQASTQPVSLP PSSPMTPMS QHQQKHHLAPHGLGR+PQTGASGLNNQIGKQRQRQPQQQQQQFQQSGRHHPQQRQ PQSQQQTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA
Sbjct: 1336 SNHASGPQQQAYAMRVAKERQMQQQRLMQQQQPQQQQQKQFTASSALMSHVQPQTQLPISSSLQNSSQIQSQASTQPVSLPAPSSPMTPMSLQHQQKHHLAPHGLGRNPQTGASGLNNQIGKQRQRQPQQQQQQFQQSGRHHPQQRQPPQSQQQTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA 1520
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000642 vs. ExPASy TrEMBL
Match: A0A0D2QI15_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G155000 PE=4 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.081e-38
Identity = 178/185 (96.22%), Postives = 181/185 (97.84%), Query Frame = 3 
Query:    3 SNHASGPQQQAYAMRLAKERXXXXXXXXXXXXXXXXXXXXFTASSTLLSHVQPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQQKHHLAPHGLGRSPQTGASGLNNQIGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA 557
            SNHASGPQQQAYAMR+AKERQMQQQRLMQQQQPQQQQQKQFTASS L+SHVQPQTQLPISSSLQNSSQIQSQASTQPVSLP PSSPMTPMS QHQQKHHLAPHGLGR+PQTGASGLNNQIGKQRQRQPQQQQQQFQQSGRHHPQQRQ PQSQQQTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA
Sbjct: 1499 SNHASGPQQQAYAMRVAKERQMQQQRLMQQQQPQQQQQKQFTASSALMSHVQPQTQLPISSSLQNSSQIQSQASTQPVSLPAPSSPMTPMSLQHQQKHHLAPHGLGRNPQTGASGLNNQIGKQRQRQPQQQQQQFQQSGRHHPQQRQPPQSQQQTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA 1683
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000642 vs. ExPASy TrEMBL
Match: A0A0D2QI25_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G155000 PE=4 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.368e-38
Identity = 178/185 (96.22%), Postives = 181/185 (97.84%), Query Frame = 3 
Query:    3 SNHASGPQQQAYAMRLAKERXXXXXXXXXXXXXXXXXXXXFTASSTLLSHVQPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQQKHHLAPHGLGRSPQTGASGLNNQIGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA 557
            SNHASGPQQQAYAMR+AKERQMQQQRLMQQQQPQQQQQKQFTASS L+SHVQPQTQLPISSSLQNSSQIQSQASTQPVSLP PSSPMTPMS QHQQKHHLAPHGLGR+PQTGASGLNNQIGKQRQRQPQQQQQQFQQSGRHHPQQRQ PQSQQQTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA
Sbjct:  426 SNHASGPQQQAYAMRVAKERQMQQQRLMQQQQPQQQQQKQFTASSALMSHVQPQTQLPISSSLQNSSQIQSQASTQPVSLPAPSSPMTPMSLQHQQKHHLAPHGLGRNPQTGASGLNNQIGKQRQRQPQQQQQQFQQSGRHHPQQRQPPQSQQQTKLLKGVGRGNMLVHQNLSADPAHLNGLSMA 610
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000642 vs. ExPASy Swiss-Prot
Match: EAF1B_ARATH (Chromatin modification-related protein EAF1 B OS=Arabidopsis thaliana GN=EAF1B PE=1 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 3.038e-10
Identity = 54/89 (60.67%), Postives = 64/89 (71.91%), Query Frame = 3 
Query:  288 QKHHLAPHGLGRSPQTGASGLNNQIGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKLLKGVGRGNMLVHQNLSADPAHLNGLSM 554
            QK  LA HGLGRSPQ+G SG+NNQ GK       Q+Q+Q QQS R HP QRQ  Q QQ  K LKG+GRGNM +HQN++ D +HLNGL+M
Sbjct: 1542 QKSQLALHGLGRSPQSGTSGVNNQAGK-------QRQRQLQQSARQHPHQRQPTQGQQLNKQLKGMGRGNM-IHQNITVDQSHLNGLTM 1622
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000642 vs. ExPASy Swiss-Prot
Match: EAF1A_ARATH (Chromatin modification-related protein EAF1 A OS=Arabidopsis thaliana GN=EAF1A PE=1 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 3.415e-10
Identity = 54/89 (60.67%), Postives = 64/89 (71.91%), Query Frame = 3 
Query:  288 QKHHLAPHGLGRSPQTGASGLNNQIGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKLLKGVGRGNMLVHQNLSADPAHLNGLSM 554
            QK  LA HGLGRSPQ+G SG+NNQ GK       Q+Q+Q QQS R HP QRQ  Q QQ  K LKG+GRGNM +HQN++ D +HLNGL+M
Sbjct: 1592 QKSQLALHGLGRSPQSGTSGVNNQAGK-------QRQRQLQQSARQHPHQRQPTQGQQLNKQLKGMGRGNM-IHQNITVDQSHLNGLTM 1672
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000642 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2T5Q8_GOSRA1.647e-3896.22Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2NZS2_GOSRA1.670e-3896.22Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2S3Q8_GOSRA1.763e-3896.22Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2T5Q1_GOSRA1.805e-3896.22Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2S3R7_GOSRA1.944e-3896.22Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2SAV7_GOSRA2.030e-3896.22Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2SAU2_GOSRA2.032e-3896.22Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2NZR0_GOSRA2.039e-3896.22Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2QI15_GOSRA2.081e-3896.22Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2QI25_GOSRA3.368e-3896.22Uncharacterized protein OS=Gossypium raimondii GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0000642 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
EAF1B_ARATH3.038e-1060.67Chromatin modification-related protein EAF1 B OS=A... [more]
EAF1A_ARATH3.415e-1060.67Chromatin modification-related protein EAF1 A OS=A... [more]
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Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0000642 ID=g.arboreum_cottongen_reftransV1_0000642; Name=g.arboreum_cottongen_reftransV1_0000642; organism=Gossypium arboreum; type=contig; length=560bp
GTTCCAATCATGCTTCCGGGCCGCAGCAACAAGCATATGCCATGCGCCTC
GCTAAAGAAAGGCAAATGCAGCAGCAGCGTCTTATGCAGCAACAGCAGCC
CCAGCAACAGCAGCAAAAACAGTTCACTGCATCTAGCACTTTGCTGTCAC
ATGTCCAGCCTCAGACCCAACTTCCCATATCCTCTTCTCTTCAGAATAGT
TCCCAGATTCAATCTCAAGCATCAACTCAACCAGTGTCACTCCCCCCTCC
ATCTTCACCAATGACTCCTATGTCATCACAGCACCAACAGAAACACCACT
TGGCCCCTCATGGACTTGGTAGGAGTCCCCAAACTGGTGCTAGTGGATTG
AACAATCAGATAGGCAAGCAACGGCAGCGGCAACCCCAGCAACAGCAGCA
GCAGTTTCAACAGTCTGGCAGGCACCATCCTCAGCAACGACAACAACCTC
AGTCCCAACAGCAAACTAAACTTTTGAAGGGAGTAGGAAGAGGGAACATG
CTGGTGCATCAGAACCTTTCCGCTGACCCTGCTCATCTGAATGGCCTCAG
CATGGCCCCA
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