g.arboreum_cottongen_reftransV1_0017929, g.arboreum_cottongen_reftransV1_0017929 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0017929
Unique Name	g.arboreum_cottongen_reftransV1_0017929
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	440

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr1	chromosome	g.arboreum_cottongen_reftransV1_0017929:1..440 . Chr1:107811847..107812286 -		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0017929 vs. ExPASy TrEMBL
Match: A0A0D2P5G8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G022300 PE=4 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 1.093e-85
Identity = 143/146 (97.95%), Postives = 144/146 (98.63%), Query Frame = -2

Query:    2 GRNRSPNCAKQGMEIWTNHTVKFCRNPTGKEVHKXXXXXXXXXXXIRKSEAASTCSSIPNVSGRQKYPDNKDGLWQHVKSLLCQGDLDSAYAKALSSGDEIVLIELLDRTGPVLESLSQKNVYNILSTLASYLLEQRFMNCIIPWL 439
            GRNRSPNCAKQGMEIWTNHTVKFCRNPTGKEVHKSSGHGGQGIG IRK+EAASTCSSIPNVSGRQKYPDNKDGLWQHVKSLLCQGDLDSAYAKALSSGDEIVLIELLDRTGPVLESLSQK VYNILSTLASYLLEQRFMNCIIPWL
Sbjct:  627 GRNRSPNCAKQGMEIWTNHTVKFCRNPTGKEVHKSSGHGGQGIGQIRKNEAASTCSSIPNVSGRQKYPDNKDGLWQHVKSLLCQGDLDSAYAKALSSGDEIVLIELLDRTGPVLESLSQKTVYNILSTLASYLLEQRFMNCIIPWL 772

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0017929 vs. ExPASy TrEMBL
Match: A0A0B0MST2_GOSAR (Microtubule-associated TORTIFOLIA1-like protein OS=Gossypium arboreum GN=F383_24648 PE=4 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 2.690e-77
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = -2

Query:   32 GRNRSPNCAKQGMEIWTNHTVKFCRNPTGKEVHKXXXXXXXXXXXIRKSEAASTCSSIPNVSGRQKYPDNKDGLWQHVKSLLCQGDLDSAYAKALSSGDEIVLIELLDRTGPVLESLSQKNVYNILSTLASYLLEQ 439
            GRNRSPNCAKQGMEIWTNHTVKFCRNPTGKEVHKSSGHGGQGIGHIRKSEAASTCSSIPNVSGRQKYPDNKDGLWQHVKSLLCQGDLDSAYAKALSSGDEIVLIELLDRTGPVLESLSQKNVYNILSTLASYLLEQ
Sbjct:  627 GRNRSPNCAKQGMEIWTNHTVKFCRNPTGKEVHKSSGHGGQGIGHIRKSEAASTCSSIPNVSGRQKYPDNKDGLWQHVKSLLCQGDLDSAYAKALSSGDEIVLIELLDRTGPVLESLSQKNVYNILSTLASYLLEQ 762

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0017929 vs. ExPASy TrEMBL
Match: A0A061GRD9_THECC (ARM repeat superfamily protein, putative isoform 1 OS=Theobroma cacao GN=TCM_038768 PE=4 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 1.350e-59
Identity = 113/146 (77.40%), Postives = 130/146 (89.04%), Query Frame = -2

Query:    2 GRNRSPNCAKQGMEIWTNHTVKFCRNPTGKEVHKXXXXXXXXXXXIRKSEAASTCSSIPNVSGRQKYPDNKDGLWQHVKSLLCQGDLDSAYAKALSSGDEIVLIELLDRTGPVLESLSQKNVYNILSTLASYLLEQRFMNCIIPWL 439
            G NRS N  KQGME+W+N+TVK CRNPTGK+VHKSSG G Q IG IRK+EAAS  +S+P+VSGRQ YPD+ +GLWQHVKSLLC+GDLDSAYA+ALSSG+E+VL+ELLDRTGPVLESLS K V +ILSTLAS+LLEQRFMNCIIPWL
Sbjct:  628 GGNRSANYVKQGMEMWSNNTVKICRNPTGKDVHKSSGQGAQVIGQIRKNEAASASASVPSVSGRQNYPDSNNGLWQHVKSLLCEGDLDSAYAEALSSGNELVLVELLDRTGPVLESLSHKTVCDILSTLASFLLEQRFMNCIIPWL 773

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0017929 vs. ExPASy TrEMBL
Match: A0A061GX98_THECC (ARM repeat superfamily protein, putative isoform 3 OS=Theobroma cacao GN=TCM_038768 PE=4 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.584e-59
Identity = 113/146 (77.40%), Postives = 130/146 (89.04%), Query Frame = -2

Query:    2 GRNRSPNCAKQGMEIWTNHTVKFCRNPTGKEVHKXXXXXXXXXXXIRKSEAASTCSSIPNVSGRQKYPDNKDGLWQHVKSLLCQGDLDSAYAKALSSGDEIVLIELLDRTGPVLESLSQKNVYNILSTLASYLLEQRFMNCIIPWL 439
            G NRS N  KQGME+W+N+TVK CRNPTGK+VHKSSG G Q IG IRK+EAAS  +S+P+VSGRQ YPD+ +GLWQHVKSLLC+GDLDSAYA+ALSSG+E+VL+ELLDRTGPVLESLS K V +ILSTLAS+LLEQRFMNCIIPWL
Sbjct:  628 GGNRSANYVKQGMEMWSNNTVKICRNPTGKDVHKSSGQGAQVIGQIRKNEAASASASVPSVSGRQNYPDSNNGLWQHVKSLLCEGDLDSAYAEALSSGNELVLVELLDRTGPVLESLSHKTVCDILSTLASFLLEQRFMNCIIPWL 773

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0017929 vs. ExPASy TrEMBL
Match: A0A067JV53_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19771 PE=4 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.392e-39
Identity = 84/146 (57.53%), Postives = 104/146 (71.23%), Query Frame = -2

Query:    2 GRNRSPNCAKQGMEIWTNHTVKFCRNPTGKEVHKXXXXXXXXXXXIRKSEAASTCSSIPNVSGRQKYPDNKDGLWQHVKSLLCQGDLDSAYAKALSSGDEIVLIELLDRTGPVLESLSQKNVYNILSTLASYLLEQRFMNCIIPWL 439
            GR+RS + A+QG EIWTN  +K  RN   K++ K+SGHGG  +   +K +A    +SI + +  +  PDN   +WQ VK  LC+GDLDSAY +ALSS DE+VLIELLDRTGPVLESLS K V +ILSTLAS+ LEQRF   IIPWL
Sbjct:  626 GRSRSIHSARQGTEIWTNPAMKTNRNAIMKDMQKTSGHGGSAMNCTQKVDAVG--ASISSANAMENGPDNNKCMWQRVKGFLCKGDLDSAYVEALSSIDELVLIELLDRTGPVLESLSHKTVIDILSTLASFFLEQRFTKSIIPWL 769

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0017929 vs. ExPASy TrEMBL
Match: A0A067GCY0_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g039101mg PE=4 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 6.701e-39
Identity = 78/146 (53.42%), Postives = 103/146 (70.55%), Query Frame = -2

Query:    2 GRNRSPNCAKQGMEIWTNHTVKFCRNPTGKEVHKXXXXXXXXXXXIRKSEAASTCSSIPNVSGRQKYPDNKDGLWQHVKSLLCQGDLDSAYAKALSSGDEIVLIELLDRTGPVLESLSQKNVYNILSTLASYLLEQRFMNCIIPWL 439
            GR+RS N  K+  E+WT+  VK  RNPTGK+ HK SG   Q +G +RK+ +    ++  N    +   ++K+ +WQ VK  LC GD++SAY +AL +GDE+VLIEL+DRTGPVLE LS K + ++LSTLASY LEQRFMN IIPWL
Sbjct:  475 GRSRSGNATKEAKEMWTDPMVKNGRNPTGKDTHKRSGLRTQPVGPVRKTNSVFASAASANA---RLNSESKNNVWQCVKGYLCDGDIESAYVEALCAGDELVLIELVDRTGPVLECLSHKTISDLLSTLASYFLEQRFMNSIIPWL 617

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0017929 vs. ExPASy TrEMBL
Match: V4UJS1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007456mg PE=4 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.700e-38
Identity = 78/146 (53.42%), Postives = 103/146 (70.55%), Query Frame = -2

Query:    2 GRNRSPNCAKQGMEIWTNHTVKFCRNPTGKEVHKXXXXXXXXXXXIRKSEAASTCSSIPNVSGRQKYPDNKDGLWQHVKSLLCQGDLDSAYAKALSSGDEIVLIELLDRTGPVLESLSQKNVYNILSTLASYLLEQRFMNCIIPWL 439
            GR+RS N  K+  E+WT+  VK  RNPTGK+ HK SG   Q +G +RK+ +    ++  N    +   ++K+ +WQ VK  LC GD++SAY +AL +GDE+VLIEL+DRTGPVLE LS K + ++LSTLASY LEQRFMN IIPWL
Sbjct:  627 GRSRSGNATKEAKEMWTDPMVKNGRNPTGKDTHKRSGLRTQPVGPVRKTNSVFASAASANA---RLNSESKNNVWQCVKGYLCDGDIESAYVEALCAGDELVLIELVDRTGPVLECLSHKTISDLLSTLASYFLEQRFMNSIIPWL 769

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0017929 vs. ExPASy TrEMBL
Match: M5XUD3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015228mg PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.176e-38
Identity = 80/146 (54.79%), Postives = 101/146 (69.18%), Query Frame = -2

Query:    2 GRNRSPNCAKQGMEIWTNHTVKFCRNPTGKEVHKXXXXXXXXXXXIRKSEAASTCSSIPNVSGRQKYPDNKDGLWQHVKSLLCQGDLDSAYAKALSSGDEIVLIELLDRTGPVLESLSQKNVYNILSTLASYLLEQRFMNCIIPWL 439
            GR+++ + AKQ  E W+N  VK  RNPTGK++ K  G G Q IG+  ++   +  SS  +   RQ   ++K+ LW+ VK  LC+GDLDSAY +AL SGDEIVL+ELLD TGPVLE LS K    +LS LASYLLEQRF+N IIPWL
Sbjct:  626 GRSQANSSAKQSTETWSNAKVKLTRNPTGKDIRKIPGQGAQRIGNS-QTRTDAMFSSASSTKVRQNVVESKNSLWKQVKGFLCEGDLDSAYVEALCSGDEIVLVELLDGTGPVLECLSPKTASGVLSILASYLLEQRFINTIIPWL 770

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0017929 vs. ExPASy TrEMBL
Match: B9HBC0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s07930g PE=4 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.129e-37
Identity = 80/145 (55.17%), Postives = 101/145 (69.66%), Query Frame = -2

Query:    2 RNRSPNCAKQGMEIWTNHTVKFCRNPTGKEVHKXXXXXXXXXXXIRKSEAASTCSSIPNVSGRQKYPDNKDGLWQHVKSLLCQGDLDSAYAKALSSGDEIVLIELLDRTGPVLESLSQKNVYNILSTLASYLLEQRFMNCIIPWL 436
            R+R  N AK G E+W N TVK  RN  GK++ K SG G Q +G  RK +  S  + + + + RQ  P++K+ +WQ VK  LC+GDL+SAY +AL S DE+VLIEL+DRTGPVLESLS K   ++LS LASY LEQRF N IIPWL
Sbjct:  628 RSRPINPAKNGTEMWANPTVKTSRNAIGKDMQKRSGQGAQNMGQARKVD--SVFAPLSSANSRQSGPESKNCVWQCVKDFLCEGDLESAYEEALCSIDELVLIELIDRTGPVLESLSSKTAGDVLSILASYFLEQRFTNSIIPWL 770

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0017929 vs. ExPASy TrEMBL
Match: D7T0N8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0065g00460 PE=4 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.641e-36
Identity = 79/147 (53.74%), Postives = 98/147 (66.67%), Query Frame = -2

Query:    2 RNRSPNCAKQGMEIWTNHTVKFCRNPTGKEVHKXXXXXXXXXX--XIRKSEAASTCSSIPNVSGRQKYPDNKDGLWQHVKSLLCQGDLDSAYAKALSSGDEIVLIELLDRTGPVLESLSQKNVYNILSTLASYLLEQRFMNCIIPWL 436
            R+RS N AKQ MEIWT+ T K  RN   K +  +S  G Q +     RK++A    +SI N   +Q   + K+ LW  VK  LC+GD++SAY +AL SGDE+VL+ELLDRTGPVLE LS K V +IL  LASY LEQRFMN +IPWL
Sbjct:  625 RSRSINSAKQDMEIWTDTTAKINRNSVRKGIQNNSVKGTQNMACIQTRKTDAVFLPASIGNT--KQNGSECKNSLWHCVKGFLCEGDIESAYVEALCSGDELVLVELLDRTGPVLECLSHKTVNDILCILASYFLEQRFMNSVIPWL 769

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0017929 vs. ExPASy Swiss-Prot
Match: SP2L_ARATH (Microtubule-associated protein SPIRAL2-like OS=Arabidopsis thaliana GN=SP2L PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 2.644e-9
Identity = 26/72 (36.11%), Postives = 45/72 (62.50%), Query Frame = -2

Query:    2 WQHVKSLLCQGDLDSAYAKALSSGDEIVLIELLDRTGPVLESLSQKNVYNILSTLASYLLEQRFMNCIIPWL 217
            W +    L  GD DSA+A+ LS+GD+ +L++L+D+TGPVL+ LS       + ++A +LL+    +  + W+
Sbjct:  683 WSNSVHALRVGDTDSAFAEVLSTGDDHLLVKLMDKTGPVLDQLSSDMGNEAIHSIAQFLLDHTLYDICLSWI 754

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0017929 vs. ExPASy Swiss-Prot
Match: MAPT_ARATH (Microtubule-associated protein TORTIFOLIA1 OS=Arabidopsis thaliana GN=TOR1 PE=1 SV=2)

HSP 1 Score: 54.6842 bits (130), Expect = 6.405e-8
Identity = 23/71 (32.39%), Postives = 44/71 (61.97%), Query Frame = -2

Query:    5 WQHVKSLLCQGDLDSAYAKALSSGDEIVLIELLDRTGPVLESLSQKNVYNILSTLASYLLEQRFMNCIIPW 217
            W +    L  GD+D+AYA+ L +GD+ ++I+L+D+TGP L+ +S +     L+ ++ +LL+    +  + W
Sbjct:  726 WSNAMHSLRVGDIDAAYAEVLCAGDQHLVIKLMDKTGPSLDQMSNEIANEALNFISQFLLDHSLYDICLSW 796

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0017929 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0017929 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0017929 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2P5G8_GOSRA	1.093e-85	97.95	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0MST2_GOSAR	2.690e-77	100.00	Microtubule-associated TORTIFOLIA1-like protein OS...	[more]
A0A061GRD9_THECC	1.350e-59	77.40	ARM repeat superfamily protein, putative isoform 1...	[more]
A0A061GX98_THECC	1.584e-59	77.40	ARM repeat superfamily protein, putative isoform 3...	[more]
A0A067JV53_JATCU	1.392e-39	57.53	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
A0A067GCY0_CITSI	6.701e-39	53.42	Uncharacterized protein (Fragment) OS=Citrus sinen...	[more]
V4UJS1_9ROSI	2.700e-38	53.42	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
M5XUD3_PRUPE	6.176e-38	54.79	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
B9HBC0_POPTR	3.129e-37	55.17	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
D7T0N8_VITVI	4.641e-36	53.74	Putative uncharacterized protein OS=Vitis vinifera...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0017929 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 2


Match Name	E-value	Identity	Description
SP2L_ARATH	2.644e-9	36.11	Microtubule-associated protein SPIRAL2-like OS=Ara...	[more]
MAPT_ARATH	6.405e-8	32.39	Microtubule-associated protein TORTIFOLIA1 OS=Arab...	[more]

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31355:SF5	ARM REPEAT SUPERFAMILY PROTEIN	coord: 1..134
IPR033337	MT-associated protein TORTIFOLIA1/SPIRAL2-like	PANTHER	PTHR31355	FAMILY NOT NAMED	coord: 1..134

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0017929 ID=g.arboreum_cottongen_reftransV1_0017929; Name=g.arboreum_cottongen_reftransV1_0017929; organism=Gossypium arboreum; type=contig; length=440bp
GCAACCATGGGATAATACAGTTCATAAACCTCTGTTCCAAGAGGTATGAT
GCCAAAGTACTGAGAATATTGTAGACATTCTTTTGGGAGAGACTTTCTAG
AACAGGACCAGTTCTATCAAGAAGCTCAATGAGGACAATTTCATCTCCAG
AAGATAGAGCTTTTGCATACGCAGAGTCTAGGTCCCCTTGGCATAGAAGA
CTTTTCACATGTTGCCATAGACCATCTTTGTTGTCTGGATACTTCTGTCT
GCCACTCACATTTGGAATGGAAGAACAAGTAGAGGCAGCTTCACTTTTTC
TGATATGGCCAATGCCTTGTCCCCCATGCCCAGAGCTTTTGTGCACTTCC
TTCCCAGTTGGATTTCTACAAAATTTTACAGTATGATTAGTCCATATCTC
CATGCCCTGCTTTGCACAATTGGGTGACCTATTTCTACCA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR033337	TORTIFOLIA1/SPIRAL2-like

Vocabulary: **Cellular Component**
Term	Definition
GO:0005874	microtubule

Search form

g.arboreum_cottongen_reftransV1_0017929, g.arboreum_cottongen_reftransV1_0017929 (contig) Gossypium arboreum

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