g.arboreum_cottongen_reftransV1_0004080, g.arboreum_cottongen_reftransV1_0004080 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0004080
Unique Name	g.arboreum_cottongen_reftransV1_0004080
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	1721

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr5	chromosome	g.arboreum_cottongen_reftransV1_0004080:1..1721 . Chr5:17266257..17271123 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0004080 vs. ExPASy TrEMBL
Match: A0A0B0P7R3_GOSAR (DDB1-and CUL4-associated factor 13 OS=Gossypium arboreum GN=F383_08586 PE=4 SV=1)

HSP 1 Score: 909.442 bits (2349), Expect = 0.000e+0
Identity = 448/448 (100.00%), Postives = 448/448 (100.00%), Query Frame = 3

Query:  108 VISRSTDEFTRERSQDLQRVFRNFDPSLRSQEKAVEYVRALNAAKLDKIFARPFIGAMDGHRDSIKCMAKNPNYLKAIFSGSDDGDIRLWDLASRRTVCQFPGHQGAVQGLTVSTDGSVLVSCGSDCTVRLWNVPDANLADSDNLSDNSAKPVAVYVWKNAFRAVDHQWDGDLFATAGAQVDIWNHNRSQPVNTFDWGADTTISVRFNPGEPNILATSANDRSITLYDLRMSSPARKVIMRTKTNSIAWNPMEPMNFTSANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKCSCDASYVISGSDDTNLRLWKAKASEQLGVVLPRERKKHEYLEAVKNRYKHLPEVKRIVRHRHLPRPVYKAANLRRTMIXXXXXXXXXXXXHSAPGSIVTEPVRKRRIIKEVE 1451
            VISRSTDEFTRERSQDLQRVFRNFDPSLRSQEKAVEYVRALNAAKLDKIFARPFIGAMDGHRDSIKCMAKNPNYLKAIFSGSDDGDIRLWDLASRRTVCQFPGHQGAVQGLTVSTDGSVLVSCGSDCTVRLWNVPDANLADSDNLSDNSAKPVAVYVWKNAFRAVDHQWDGDLFATAGAQVDIWNHNRSQPVNTFDWGADTTISVRFNPGEPNILATSANDRSITLYDLRMSSPARKVIMRTKTNSIAWNPMEPMNFTSANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKCSCDASYVISGSDDTNLRLWKAKASEQLGVVLPRERKKHEYLEAVKNRYKHLPEVKRIVRHRHLPRPVYKAANLRRTMIEAERRKEQRRKAHSAPGSIVTEPVRKRRIIKEVE
Sbjct:    5 VISRSTDEFTRERSQDLQRVFRNFDPSLRSQEKAVEYVRALNAAKLDKIFARPFIGAMDGHRDSIKCMAKNPNYLKAIFSGSDDGDIRLWDLASRRTVCQFPGHQGAVQGLTVSTDGSVLVSCGSDCTVRLWNVPDANLADSDNLSDNSAKPVAVYVWKNAFRAVDHQWDGDLFATAGAQVDIWNHNRSQPVNTFDWGADTTISVRFNPGEPNILATSANDRSITLYDLRMSSPARKVIMRTKTNSIAWNPMEPMNFTSANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKCSCDASYVISGSDDTNLRLWKAKASEQLGVVLPRERKKHEYLEAVKNRYKHLPEVKRIVRHRHLPRPVYKAANLRRTMIEAERRKEQRRKAHSAPGSIVTEPVRKRRIIKEVE 452

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BLAST of g.arboreum_cottongen_reftransV1_0004080 vs. ExPASy TrEMBL
Match: A0A0D2PW75_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G199500 PE=4 SV=1)

HSP 1 Score: 902.123 bits (2330), Expect = 0.000e+0
Identity = 444/448 (99.11%), Postives = 446/448 (99.55%), Query Frame = 3

Query:  108 VISRSTDEFTRERSQDLQRVFRNFDPSLRSQEKAVEYVRALNAAKLDKIFARPFIGAMDGHRDSIKCMAKNPNYLKAIFSGSDDGDIRLWDLASRRTVCQFPGHQGAVQGLTVSTDGSVLVSCGSDCTVRLWNVPDANLADSDNLSDNSAKPVAVYVWKNAFRAVDHQWDGDLFATAGAQVDIWNHNRSQPVNTFDWGADTTISVRFNPGEPNILATSANDRSITLYDLRMSSPARKVIMRTKTNSIAWNPMEPMNFTSANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKCSCDASYVISGSDDTNLRLWKAKASEQLGVVLPRERKKHEYLEAVKNRYKHLPEVKRIVRHRHLPRPVYKAANLRRTMIXXXXXXXXXXXXHSAPGSIVTEPVRKRRIIKEVE 1451
            VISRSTDEFTRERSQDLQRVFRNFDPSLRSQEKAVEYVRALNAAKLDKIFARPFIGAMDGHRDSIKCMAKNPNYLKAIFSGSDDGDIRLWDLASRRTVCQFPGHQGAVQGLTVSTDGS+LVSCGSDCTVRLWNVPDANLADSD LSDNSAKPVAVYVWKNAFRAVDHQWDGDLFATAGAQVDIWNHNRSQPVNTFDWGADTTISVRFNPGEPNILATSANDRSITLYDLRMSSPARKVIMRTKTNSIAWNPMEPMNFT+ANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVK SCDASYVISGSDDTNLRLWKAKASEQLGVVLPRERKKHEYLEAVKNRYKHLPEVKRIVRHRHLPRPVYKAANLRRTMIEAERRKEQRRKAHSAPGSIVTEPVRKRRIIKEVE
Sbjct:    5 VISRSTDEFTRERSQDLQRVFRNFDPSLRSQEKAVEYVRALNAAKLDKIFARPFIGAMDGHRDSIKCMAKNPNYLKAIFSGSDDGDIRLWDLASRRTVCQFPGHQGAVQGLTVSTDGSILVSCGSDCTVRLWNVPDANLADSDILSDNSAKPVAVYVWKNAFRAVDHQWDGDLFATAGAQVDIWNHNRSQPVNTFDWGADTTISVRFNPGEPNILATSANDRSITLYDLRMSSPARKVIMRTKTNSIAWNPMEPMNFTAANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKYSCDASYVISGSDDTNLRLWKAKASEQLGVVLPRERKKHEYLEAVKNRYKHLPEVKRIVRHRHLPRPVYKAANLRRTMIEAERRKEQRRKAHSAPGSIVTEPVRKRRIIKEVE 452

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BLAST of g.arboreum_cottongen_reftransV1_0004080 vs. ExPASy TrEMBL
Match: A0A061E573_THECC (Nucleotide binding,protein binding OS=Theobroma cacao GN=TCM_008186 PE=4 SV=1)

HSP 1 Score: 874.004 bits (2257), Expect = 0.000e+0
Identity = 426/448 (95.09%), Postives = 438/448 (97.77%), Query Frame = 3

Query:  108 VISRSTDEFTRERSQDLQRVFRNFDPSLRSQEKAVEYVRALNAAKLDKIFARPFIGAMDGHRDSIKCMAKNPNYLKAIFSGSDDGDIRLWDLASRRTVCQFPGHQGAVQGLTVSTDGSVLVSCGSDCTVRLWNVPDANLADSDNLSDNSAKPVAVYVWKNAFRAVDHQWDGDLFATAGAQVDIWNHNRSQPVNTFDWGADTTISVRFNPGEPNILATSANDRSITLYDLRMSSPARKVIMRTKTNSIAWNPMEPMNFTSANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKCSCDASYVISGSDDTNLRLWKAKASEQLGVVLPRERKKHEYLEAVKNRYKHLPEVKRIVRHRHLPRPVYKAANLRRTMIXXXXXXXXXXXXHSAPGSIVTEPVRKRRIIKEVE 1451
            VISRSTDEFTRERSQDLQRVFRNFDP+LR+QEKAVEYVRALNAAKLDKIFARPFIGAMDGHRDSIKCMAKNP+YLK IFSGSDDGDIRLWD+ASRRTVCQFPGHQGAVQGLTVSTDGS+LVSCGSDCTVRLWNVP A LADSDNLSDNSAK +AVYVWKNAFRAVDHQWDGDLFATAGAQVDIWNHNRSQPVNTFDWG DTTISVRFNPGEPNILATSANDRSITLYDLRMSSPARKVIMRTK NSIAWNPMEP+NFT ANEDCNCYSYDARKL+EAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVK S DASYVISGSDDTNLRLWKAKASEQLGVVLPRERKKHEYLEAVKNRYKHLPEVKRIVRHRHLP+P+YKAANLRRTMIEAERRKEQRRKAHSAPGS+VTE +RKRRIIKEVE
Sbjct:    5 VISRSTDEFTRERSQDLQRVFRNFDPTLRTQEKAVEYVRALNAAKLDKIFARPFIGAMDGHRDSIKCMAKNPSYLKGIFSGSDDGDIRLWDIASRRTVCQFPGHQGAVQGLTVSTDGSILVSCGSDCTVRLWNVPGATLADSDNLSDNSAKALAVYVWKNAFRAVDHQWDGDLFATAGAQVDIWNHNRSQPVNTFDWGTDTTISVRFNPGEPNILATSANDRSITLYDLRMSSPARKVIMRTKANSIAWNPMEPLNFTVANEDCNCYSYDARKLDEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKYSSDASYVISGSDDTNLRLWKAKASEQLGVVLPRERKKHEYLEAVKNRYKHLPEVKRIVRHRHLPKPIYKAANLRRTMIEAERRKEQRRKAHSAPGSVVTESIRKRRIIKEVE 452

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BLAST of g.arboreum_cottongen_reftransV1_0004080 vs. ExPASy TrEMBL
Match: U5FHE1_POPTR (Transducin family protein OS=Populus trichocarpa GN=POPTR_0017s04650g PE=4 SV=1)

HSP 1 Score: 809.675 bits (2090), Expect = 0.000e+0
Identity = 392/448 (87.50%), Postives = 423/448 (94.42%), Query Frame = 3

Query:  108 VISRSTDEFTRERSQDLQRVFRNFDPSLRSQEKAVEYVRALNAAKLDKIFARPFIGAMDGHRDSIKCMAKNPNYLKAIFSGSDDGDIRLWDLASRRTVCQFPGHQGAVQGLTVSTDGSVLVSCGSDCTVRLWNVPDANLADSDNLSDNSAKPVAVYVWKNAFRAVDHQWDGDLFATAGAQVDIWNHNRSQPVNTFDWGADTTISVRFNPGEPNILATSANDRSITLYDLRMSSPARKVIMRTKTNSIAWNPMEPMNFTSANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKCSCDASYVISGSDDTNLRLWKAKASEQLGVVLPRERKKHEYLEAVKNRYKHLPEVKRIVRHRHLPRPVYKAANLRRTMIXXXXXXXXXXXXHSAPGSIVTEPVRKRRIIKEVE 1451
            VISRSTDEFTRERSQDLQRVF NFDP+LR+QEKAVEY RALNAAKLDKIFARPFIGAMDGH D++ CMAKNPNYLK IFSGS DGDIRLWD+A+RRTVCQFPGHQGAV+GLT STDGS LVSCG+DCTVRLWNVP A + DSDNLSD S++P AVY+ +NAF AVDHQW+GDLFATAGAQVDIWNHNRSQPVN+F WG D+ ISVRFNPGEPN+L TSA+DRSI LYDLR+SSPARK+IMRTKTNSI+WNPMEPMNFT+ANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVK SCDASYVISGSDDTNLRLWKAKASEQLGV+LPRE+K+HEY EA+KNRYKHLPEVKRIVRHRHLP+P+YKA  LRR MIEAERRK+QRRKAHSAPGSIVTEP+RKRRIIKEV+
Sbjct:    5 VISRSTDEFTRERSQDLQRVFHNFDPNLRTQEKAVEYQRALNAAKLDKIFARPFIGAMDGHIDAVSCMAKNPNYLKGIFSGSMDGDIRLWDIANRRTVCQFPGHQGAVRGLTASTDGSTLVSCGTDCTVRLWNVPVATIMDSDNLSDCSSEPRAVYMGENAFWAVDHQWNGDLFATAGAQVDIWNHNRSQPVNSFKWGTDSVISVRFNPGEPNLLVTSASDRSIMLYDLRVSSPARKLIMRTKTNSISWNPMEPMNFTAANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLLPREQKRHEYNEALKNRYKHLPEVKRIVRHRHLPKPIYKAGVLRRVMIEAERRKDQRRKAHSAPGSIVTEPMRKRRIIKEVD 452

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BLAST of g.arboreum_cottongen_reftransV1_0004080 vs. ExPASy TrEMBL
Match: E0CTI3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g03140 PE=4 SV=1)

HSP 1 Score: 805.438 bits (2079), Expect = 0.000e+0
Identity = 393/448 (87.72%), Postives = 425/448 (94.87%), Query Frame = 3

Query:  108 VISRSTDEFTRERSQDLQRVFRNFDPSLRSQEKAVEYVRALNAAKLDKIFARPFIGAMDGHRDSIKCMAKNPNYLKAIFSGSDDGDIRLWDLASRRTVCQFPGHQGAVQGLTVSTDGSVLVSCGSDCTVRLWNVPDANLADSDNLSDNSAKPVAVYVWKNAFRAVDHQWDGDLFATAGAQVDIWNHNRSQPVNTFDWGADTTISVRFNPGEPNILATSANDRSITLYDLRMSSPARKVIMRTKTNSIAWNPMEPMNFTSANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKCSCDASYVISGSDDTNLRLWKAKASEQLGVVLPRERKKHEYLEAVKNRYKHLPEVKRIVRHRHLPRPVYKAANLRRTMIXXXXXXXXXXXXHSAPGSIVTEPVRKRRIIKEVE 1451
            VISRSTDEFTRERSQDLQRVFRNFDP+LR QEKAVEYVRALNAAKLDK+FARPFIGAMDGH DSI CMAKNPNYLK IFSGS DGDIRLWD+ASRRTVCQFPGHQGAV+GLT STDG +LVSCG+DCTVRLWNVP A ++DSD+ SDNS KP+AV+VWKNAF  VDHQWDG+LFATAGAQVDIW+HNRSQPVNTF WG D+ I+VRFNPGEP+ILA SA+DRS+ LYDLRMSSPARK+IMRTKTNSI+WNPMEPMNFT+ANEDCNCYSYDARKL+EAKCVHKDHVSAVMDID+SPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVK +CDASYVISGSDDTNLRLWKAKASEQLGV+LPRERKKHEY EAVKNRYKHLPEVKRIVRHRHLP+P++KAA LRRTM EAERRKE++RKAHSAPGSI TEP+RKRRII+EVE
Sbjct:    5 VISRSTDEFTRERSQDLQRVFRNFDPNLRKQEKAVEYVRALNAAKLDKVFARPFIGAMDGHIDSISCMAKNPNYLKGIFSGSMDGDIRLWDIASRRTVCQFPGHQGAVRGLTASTDGRILVSCGTDCTVRLWNVPVATISDSDDSSDNSMKPLAVHVWKNAFWGVDHQWDGNLFATAGAQVDIWDHNRSQPVNTFQWGNDSVIAVRFNPGEPDILAASASDRSLILYDLRMSSPARKLIMRTKTNSISWNPMEPMNFTAANEDCNCYSYDARKLDEAKCVHKDHVSAVMDIDYSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKFTCDASYVISGSDDTNLRLWKAKASEQLGVLLPRERKKHEYHEAVKNRYKHLPEVKRIVRHRHLPKPIFKAAALRRTMTEAERRKEEKRKAHSAPGSISTEPLRKRRIIQEVE 452

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BLAST of g.arboreum_cottongen_reftransV1_0004080 vs. ExPASy TrEMBL
Match: A0A059A0D2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K01052 PE=4 SV=1)

HSP 1 Score: 802.742 bits (2072), Expect = 0.000e+0
Identity = 385/448 (85.94%), Postives = 417/448 (93.08%), Query Frame = 3

Query:  108 VISRSTDEFTRERSQDLQRVFRNFDPSLRSQEKAVEYVRALNAAKLDKIFARPFIGAMDGHRDSIKCMAKNPNYLKAIFSGSDDGDIRLWDLASRRTVCQFPGHQGAVQGLTVSTDGSVLVSCGSDCTVRLWNVPDANLADSDNLSDNSAKPVAVYVWKNAFRAVDHQWDGDLFATAGAQVDIWNHNRSQPVNTFDWGADTTISVRFNPGEPNILATSANDRSITLYDLRMSSPARKVIMRTKTNSIAWNPMEPMNFTSANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKCSCDASYVISGSDDTNLRLWKAKASEQLGVVLPRERKKHEYLEAVKNRYKHLPEVKRIVRHRHLPRPVYKAANLRRTMIXXXXXXXXXXXXHSAPGSIVTEPVRKRRIIKEVE 1451
            VISRSTDEFTRERSQDLQRVFRNFDP+LR+QEKAVEYVRALNAAKLDK+FARPF+GAMDGH DS+ CMAKNPNYLK IFSGS DGDIRLWD+ASRRTVCQFPGHQG V+GL  STDG +LVSCG D TVRLWNVP A L +SD   +N AKP+AVYVWKNAF AVDHQWDG+LFATAGAQVDIWN NRSQP+++F+WG DT ISVRFNPGEPN+LATS +DRSITLYDLRMSSP RKVIMRTKTN+I+WNPMEPMNFT+ANEDCNCYSYDARKLEEAKCVHKDHVSAVMDID+SPTGREFVTGSYDRTVRIFQYNGGHSRE+YHTKRMQRVFCVK SCDASYVISGSDDTNLRLWKAKASEQLGVVLPRER+KHEY EAVK+RYKHLPEVKRIVRHRHLP+P+YKA  LRRT+ EA+RRKE+RRKAHSAPGS   EP+RKRRIIKE+E
Sbjct:    5 VISRSTDEFTRERSQDLQRVFRNFDPNLRTQEKAVEYVRALNAAKLDKVFARPFVGAMDGHVDSVSCMAKNPNYLKGIFSGSMDGDIRLWDIASRRTVCQFPGHQGPVRGLAASTDGQILVSCGIDSTVRLWNVPVATLGESDGTHENLAKPLAVYVWKNAFWAVDHQWDGELFATAGAQVDIWNQNRSQPISSFEWGTDTVISVRFNPGEPNVLATSGSDRSITLYDLRMSSPTRKVIMRTKTNAISWNPMEPMNFTAANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDYSPTGREFVTGSYDRTVRIFQYNGGHSREVYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVVLPRERRKHEYHEAVKSRYKHLPEVKRIVRHRHLPKPIYKAGILRRTVNEADRRKEERRKAHSAPGSSSAEPLRKRRIIKEIE 452

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BLAST of g.arboreum_cottongen_reftransV1_0004080 vs. ExPASy TrEMBL
Match: A0A067JJL4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25744 PE=4 SV=1)

HSP 1 Score: 802.357 bits (2071), Expect = 0.000e+0
Identity = 381/448 (85.04%), Postives = 421/448 (93.97%), Query Frame = 3

Query:  108 VISRSTDEFTRERSQDLQRVFRNFDPSLRSQEKAVEYVRALNAAKLDKIFARPFIGAMDGHRDSIKCMAKNPNYLKAIFSGSDDGDIRLWDLASRRTVCQFPGHQGAVQGLTVSTDGSVLVSCGSDCTVRLWNVPDANLADSDNLSDNSAKPVAVYVWKNAFRAVDHQWDGDLFATAGAQVDIWNHNRSQPVNTFDWGADTTISVRFNPGEPNILATSANDRSITLYDLRMSSPARKVIMRTKTNSIAWNPMEPMNFTSANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKCSCDASYVISGSDDTNLRLWKAKASEQLGVVLPRERKKHEYLEAVKNRYKHLPEVKRIVRHRHLPRPVYKAANLRRTMIXXXXXXXXXXXXHSAPGSIVTEPVRKRRIIKEVE 1451
            VISRSTDEFTRERSQDLQRVF NFDPSLR QEKA+EYVRALNA KLDKIFARPFIGAMDGH D++ CMAKNPNYLK IFSGS DGDIRLWD+ASRRTVCQFPGHQGAV+GLT STDG  L+SCG+DCTVRLWNVP A++ +SD+ S++SA+P AVYV KNAF  VDHQWDG+LFATAGAQVDIWNHNRSQPVN+F+WG DT ISVRFNPGEPN+LAT+A+DRSITLYDLR+S+PARK+IM TKTNSIAWNPMEPMNFT+ANEDCNCYSYDARKL+EAKCVHKDHVSAVMDID+SPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVK +CDASY+ISGSDDTNLRLWK KASEQLGV+LPRE++KHEY EA+K RYKHLPEVKRI+RHRHLP+P++KAA LRRTM EA RRKE+RRKAHSAPGSIVT+P+RK+RIIKEVE
Sbjct:    5 VISRSTDEFTRERSQDLQRVFHNFDPSLRPQEKAIEYVRALNATKLDKIFARPFIGAMDGHIDAVSCMAKNPNYLKGIFSGSMDGDIRLWDIASRRTVCQFPGHQGAVRGLTASTDGRTLISCGTDCTVRLWNVPVASIMESDSTSNSSAEPKAVYVGKNAFWGVDHQWDGELFATAGAQVDIWNHNRSQPVNSFEWGTDTVISVRFNPGEPNLLATTASDRSITLYDLRVSTPARKLIMLTKTNSIAWNPMEPMNFTAANEDCNCYSYDARKLDEAKCVHKDHVSAVMDIDYSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKFTCDASYIISGSDDTNLRLWKTKASEQLGVLLPREKRKHEYHEALKKRYKHLPEVKRIIRHRHLPKPIFKAAALRRTMTEASRRKEERRKAHSAPGSIVTKPLRKKRIIKEVE 452

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BLAST of g.arboreum_cottongen_reftransV1_0004080 vs. ExPASy TrEMBL
Match: B9RVU4_RICCO (U3 small nucleolar RNA (U3 snorna) associated protein, putative OS=Ricinus communis GN=RCOM_1172980 PE=4 SV=1)

HSP 1 Score: 795.038 bits (2052), Expect = 0.000e+0
Identity = 378/448 (84.38%), Postives = 417/448 (93.08%), Query Frame = 3

Query:  108 VISRSTDEFTRERSQDLQRVFRNFDPSLRSQEKAVEYVRALNAAKLDKIFARPFIGAMDGHRDSIKCMAKNPNYLKAIFSGSDDGDIRLWDLASRRTVCQFPGHQGAVQGLTVSTDGSVLVSCGSDCTVRLWNVPDANLADSDNLSDNSAKPVAVYVWKNAFRAVDHQWDGDLFATAGAQVDIWNHNRSQPVNTFDWGADTTISVRFNPGEPNILATSANDRSITLYDLRMSSPARKVIMRTKTNSIAWNPMEPMNFTSANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKCSCDASYVISGSDDTNLRLWKAKASEQLGVVLPRERKKHEYLEAVKNRYKHLPEVKRIVRHRHLPRPVYKAANLRRTMIXXXXXXXXXXXXHSAPGSIVTEPVRKRRIIKEVE 1451
            VISRS+D+FTRERSQDLQRVFRNFDPSLR+QEK++EYVRALNAAKLDKIFARPFIGAMDGH D+I CMAKNPNYLK IFSGS DGDIRLWD+ASRRTVCQFPGHQGAV+GLT STDG +L+SCG+DCT RLW VP A + +SD  S+ SA+P A+YV KNAF  VDHQWDG+LFAT GAQVDIWNHNRSQPVN+F+WG DT ISVRFNPGEPN+LA SA+DRSITLYDLR+SSPARK+IMRT+TNSIAWNPMEPMNFT+ANEDCNCYS+DARKL+EAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIF YNGGHSREIYHTKRMQRVFCVK SCD SY+ISGSDDTNLRLWKAKASEQLGV+LPRERK+HEY EAVKNRYKHLPE+KRIVRHRHLP+P+YKAA +RRT+ EAE+RKE RR+AHS PGS+VTEP+RKRRIIKE E
Sbjct:    5 VISRSSDDFTRERSQDLQRVFRNFDPSLRTQEKSIEYVRALNAAKLDKIFARPFIGAMDGHIDAISCMAKNPNYLKGIFSGSMDGDIRLWDIASRRTVCQFPGHQGAVRGLTASTDGCILISCGTDCTARLWKVPVATMMESDGPSNRSAEPQAIYVGKNAFWGVDHQWDGELFATGGAQVDIWNHNRSQPVNSFEWGTDTVISVRFNPGEPNLLAASASDRSITLYDLRVSSPARKLIMRTRTNSIAWNPMEPMNFTAANEDCNCYSFDARKLDEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFPYNGGHSREIYHTKRMQRVFCVKFSCDGSYIISGSDDTNLRLWKAKASEQLGVLLPRERKRHEYNEAVKNRYKHLPEIKRIVRHRHLPKPIYKAAEIRRTVTEAEKRKEDRRRAHSTPGSVVTEPLRKRRIIKEEE 452

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BLAST of g.arboreum_cottongen_reftransV1_0004080 vs. ExPASy TrEMBL
Match: A0A067DNC0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012994mg PE=4 SV=1)

HSP 1 Score: 782.711 bits (2020), Expect = 0.000e+0
Identity = 380/448 (84.82%), Postives = 420/448 (93.75%), Query Frame = 3

Query:  108 VISRSTDEFTRERSQDLQRVFRNFDPSLRSQEKAVEYVRALNAAKLDKIFARPFIGAMDGHRDSIKCMAKNPNYLKAIFSGSDDGDIRLWDLASRRTVCQFPGHQGAVQGLTVSTDGSVLVSCGSDCTVRLWNVPDANLADSDNLSDNSAKPVAVYVWKNAFRAVDHQWDGDLFATAGAQVDIWNHNRSQPVNTFDWGADTTISVRFNPGEPNILATSANDRSITLYDLRMSSPARKVIMRTKTNSIAWNPMEPMNFTSANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKCSCDASYVISGSDDTNLRLWKAKASEQLGVVLPRERKKHEYLEAVKNRYKHLPEVKRIVRHRHLPRPVYKAANLRRTMIXXXXXXXXXXXXHSAPGSIVTEPVRKRRIIKEVE 1451
            VISRSTDEFTRERSQDLQRV+ N+DP+LR QEKAVEYVRAL AAKL+KIFARPFIGA+DGHRD I CMAKNPNYLK  FSGS DGDIRLWD+A+RRTVCQ+ GHQGAV+GLTVSTDG +LVSCG+DCTV+LWNVP A L DSD+ +DNS++P+AVYVWKN+F AVDHQW+GDLFATAGAQVDIWNHNRSQP+N+F WG DT ISVRFNP EPN+LAT+A+DRSITLYDLRMSSPARKVIMRTK+NSI+WNPMEPMNFT+ANEDCNCYSYD+RKL+EAKCVH  H SAVMDID+SPTGREFVTGSYDRT+RIFQYNGG SREIYHTKRMQRVFCVK SCDASYVISGSDDTNLRLWKAKASEQLGV+ PRE++KH Y EAVKNRYKHLPE+KRIVRHRHLP+P+YKAA+LRRTM+EAERRK +RRKAHSAPGSIVTEPVRKRRIIKEVE
Sbjct:    5 VISRSTDEFTRERSQDLQRVYHNYDPNLRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIYKAASLRRTMMEAERRKAERRKAHSAPGSIVTEPVRKRRIIKEVE 452

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BLAST of g.arboreum_cottongen_reftransV1_0004080 vs. ExPASy TrEMBL
Match: A0A0A0K1Y9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G038680 PE=4 SV=1)

HSP 1 Score: 782.326 bits (2019), Expect = 0.000e+0
Identity = 375/448 (83.71%), Postives = 421/448 (93.97%), Query Frame = 3

Query:  108 VISRSTDEFTRERSQDLQRVFRNFDPSLRSQEKAVEYVRALNAAKLDKIFARPFIGAMDGHRDSIKCMAKNPNYLKAIFSGSDDGDIRLWDLASRRTVCQFPGHQGAVQGLTVSTDGSVLVSCGSDCTVRLWNVPDANLADSDNLSDNSAKPVAVYVWKNAFRAVDHQWDGDLFATAGAQVDIWNHNRSQPVNTFDWGADTTISVRFNPGEPNILATSANDRSITLYDLRMSSPARKVIMRTKTNSIAWNPMEPMNFTSANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKCSCDASYVISGSDDTNLRLWKAKASEQLGVVLPRERKKHEYLEAVKNRYKHLPEVKRIVRHRHLPRPVYKAANLRRTMIXXXXXXXXXXXXHSAPGSIVTEPVRKRRIIKEVE 1451
            VISRSTDEFTRERS DLQRVFRNFDPSLR+QEKAVEYVRA+NAAKLDK+FA+PFIGAMDGH DS+ CMAKNPN+LK IFSGS DGDIRLWD+A+RRTV QFPGHQGAV+GLT STDG +L+SCG+DCTVRLWNVP   L +S   S+NS++P+AVYVWKNAF A+DHQWDG+LFATAGAQ+DIW+HNRSQPV++++WG D+ ISVRFNPGEPN+LATSA+DRSI LYDLRMSSPARKVIMRTKTNSI WNP EPMNFT+ANEDCNCYSYD+RKL+EAKCVH+DHVSAVMDIDFSP+GREFVTGSYDRT+RIF YNGGHSREIYHTKRMQRVFCV+ SCDASYVISGSDDTNLRLWKAKASEQLGV+LPRE++KHEY EAVKNRYKHLPEVKRIVRHRHLP+P++KAA LRRT+I+AERRKE+RRKAHSAPGSI T P+R+RRIIKEVE
Sbjct:    5 VISRSTDEFTRERSHDLQRVFRNFDPSLRTQEKAVEYVRAVNAAKLDKMFAKPFIGAMDGHMDSVSCMAKNPNHLKGIFSGSMDGDIRLWDIANRRTVYQFPGHQGAVRGLTASTDGRILISCGTDCTVRLWNVPVPTL-NSYETSNNSSEPLAVYVWKNAFWAIDHQWDGNLFATAGAQLDIWDHNRSQPVSSYEWGTDSVISVRFNPGEPNVLATSASDRSIALYDLRMSSPARKVIMRTKTNSICWNPREPMNFTAANEDCNCYSYDSRKLDEAKCVHRDHVSAVMDIDFSPSGREFVTGSYDRTIRIFPYNGGHSREIYHTKRMQRVFCVRFSCDASYVISGSDDTNLRLWKAKASEQLGVLLPREKRKHEYQEAVKNRYKHLPEVKRIVRHRHLPKPIFKAAALRRTIIDAERRKEERRKAHSAPGSISTVPLRRRRIIKEVE 451

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BLAST of g.arboreum_cottongen_reftransV1_0004080 vs. ExPASy Swiss-Prot
Match: DCA13_CHICK (DDB1- and CUL4-associated factor 13 OS=Gallus gallus GN=DCAF13 PE=2 SV=1)

HSP 1 Score: 439.884 bits (1130), Expect = 1.482e-147
Identity = 207/448 (46.21%), Postives = 300/448 (66.96%), Query Frame = 3

Query:  108 VISRSTDEFTRERSQDLQRVFRNFDPSLRSQEKAVEYVRALNAAKLDKIFARPFIGAMDGHRDSIKCMAKNPNYLKAIFSGSDDGDIRLWDLASRRTVCQFPGHQGAVQGLTVSTDGSVLVSCGSDCTVRLWNVPDANLADSDNLSDNSAKPVAVYVWKNAFRAVDHQWDGDLFATAGAQVDIWNHNRSQPVNTFDWGADTTISVRFNPGEPNILATSANDRSITLYDLRMSSPARKVIMRTKTNSIAWNPMEPMNFTSANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKCSCDASYVISGSDDTNLRLWKAKASEQLGVVLPRERKKHEYLEAVKNRYKHLPEVKRIVRHRHLPRPVYKAANLRRTMIXXXXXXXXXXXXHSAPGSIVTEPVRKRRIIKEVE 1451
            V+SR+ D++ RE   DLQRV RN+DP+L   E A EYVRALNA KL+++FA+PF+ ++DGHRD + CMAK+P  L  + SG+ DG++R+W+L  R+ +     H+G V+G+     G+   + G D TV+ W +      + +       +P+   + K  +  +DH W   +FAT G QVDIW+  R+ P+ +  WG D+  SV+FNP E  +L + A+DR+I LYD+R S+P +KVI+  +TN++ WNPME   FT+ANED N Y++D R L     VH DHVSAV+D+D+SPTG+EFV+ S+D++VRIF  + GHSRE+YHTKRMQ V  VK + D+ Y++ GSD+ N+RLWKA ASE+LGV+ PRE+    Y + +K +++H P++KRI RHRHLP+ +Y     +R M EA RRKE  R+ HS PGS+     +K+ I+  V+
Sbjct:    5 VLSRNPDDYVRETKLDLQRVPRNYDPALHPFEVAREYVRALNATKLERVFAKPFLSSLDGHRDGVNCMAKHPKSLSTVLSGACDGEVRIWNLTKRQCIRALQAHEGFVRGMCARFCGTSFFTVGDDKTVKQWKMESPGYGEEE-------EPIHTILGKTVYTGIDHHWKDAVFATCGQQVDIWDEQRTSPMCSLTWGFDSISSVKFNPIETYLLGSCASDRNIVLYDMRQSTPLKKVILNMRTNTLCWNPMEAFIFTAANEDYNLYTFDMRFLTSPVMVHMDHVSAVLDVDYSPTGKEFVSASFDKSVRIFPVDKGHSREVYHTKRMQHVITVKWTSDSRYILCGSDEMNIRLWKANASEKLGVLAPREKAAMNYNQKLKEKFQHHPQIKRIARHRHLPKSIYCQIKEQRIMREARRRKELNRRKHSKPGSVPVVSEKKKHIVAVVQ 445

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BLAST of g.arboreum_cottongen_reftransV1_0004080 vs. ExPASy Swiss-Prot
Match: DCA13_MOUSE (DDB1- and CUL4-associated factor 13 OS=Mus musculus GN=Dcaf13 PE=2 SV=2)

HSP 1 Score: 433.721 bits (1114), Expect = 5.033e-145
Identity = 201/448 (44.87%), Postives = 301/448 (67.19%), Query Frame = 3

Query:  108 VISRSTDEFTRERSQDLQRVFRNFDPSLRSQEKAVEYVRALNAAKLDKIFARPFIGAMDGHRDSIKCMAKNPNYLKAIFSGSDDGDIRLWDLASRRTVCQFPGHQGAVQGLTVSTDGSVLVSCGSDCTVRLWNVPDANLADSDNLSDNSAKPVAVYVWKNAFRAVDHQWDGDLFATAGAQVDIWNHNRSQPVNTFDWGADTTISVRFNPGEPNILATSANDRSITLYDLRMSSPARKVIMRTKTNSIAWNPMEPMNFTSANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKCSCDASYVISGSDDTNLRLWKAKASEQLGVVLPRERKKHEYLEAVKNRYKHLPEVKRIVRHRHLPRPVYKAANLRRTMIXXXXXXXXXXXXHSAPGSIVTEPVRKRRIIKEVE 1451
            ++SR+ D + RE   D+QRV RN+DP+L   E   EYVRALNA KL+++FA+PF+ ++DGHRD + C+AK+P  L ++ SG+ DG++++W+L  R+ +     H+G V+G+     G+   + G D TV+ W +      + +       +P+   + K  +  +DH W   +FAT G QVDIW+  R+ PV + +WG D+  SV+FNP E  +L + A+DR+I LYD+R ++P +KVI+  +TN+I WNPME  NFT+ANED N Y++D R L+    VH DHVSAV+D+D+SPTG+EFV+ S+D+++RIF  +   SRE+YHTKRMQ V CVK + D+ Y++ GSD+ N+RLWKA ASE+LGV+  RE+  ++Y + +K ++++ P VKRI RHRHLP+ +Y     +R M EA RRKE  R+ HS PGS+     RK+ ++  V+
Sbjct:    5 MLSRNPDNYVRETKLDIQRVPRNYDPTLHPFEVPREYVRALNATKLERVFAKPFLASLDGHRDGVNCLAKHPKSLASVLSGACDGEVKIWNLTKRKCIRTIQAHEGFVRGMCTRFCGTSFFTVGDDKTVKQWKMDGPGYGEEE-------EPLYTVLGKTVYTGIDHHWKDPVFATCGQQVDIWDEQRTSPVCSMNWGFDSISSVKFNPVETFLLGSCASDRNIVLYDMRQATPLKKVILEMRTNTICWNPMEAFNFTAANEDYNLYTFDMRALDTPVMVHMDHVSAVLDVDYSPTGKEFVSASFDKSIRIFPVDKSRSREVYHTKRMQHVMCVKWTSDSKYIMCGSDEMNIRLWKANASEKLGVLTSREKAANDYNQKLKEKFQYHPHVKRIARHRHLPKSIYSQIQEQRVMKEARRRKEMNRRKHSKPGSVPIVSERKKHVVAVVK 445

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BLAST of g.arboreum_cottongen_reftransV1_0004080 vs. ExPASy Swiss-Prot
Match: DCA13_XENTR (DDB1- and CUL4-associated factor 13 OS=Xenopus tropicalis GN=dcaf13 PE=2 SV=1)

HSP 1 Score: 429.869 bits (1104), Expect = 1.302e-143
Identity = 201/448 (44.87%), Postives = 294/448 (65.62%), Query Frame = 3

Query:  108 VISRSTDEFTRERSQDLQRVFRNFDPSLRSQEKAVEYVRALNAAKLDKIFARPFIGAMDGHRDSIKCMAKNPNYLKAIFSGSDDGDIRLWDLASRRTVCQFPGHQGAVQGLTVSTDGSVLVSCGSDCTVRLWNVPDANLADSDNLSDNSAKPVAVYVWKNAFRAVDHQWDGDLFATAGAQVDIWNHNRSQPVNTFDWGADTTISVRFNPGEPNILATSANDRSITLYDLRMSSPARKVIMRTKTNSIAWNPMEPMNFTSANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKCSCDASYVISGSDDTNLRLWKAKASEQLGVVLPRERKKHEYLEAVKNRYKHLPEVKRIVRHRHLPRPVYKAANLRRTMIXXXXXXXXXXXXHSAPGSIVTEPVRKRRIIKEVE 1451
            V+ R+ D++ RE  +DLQRV RN+DP+L   E   EY RALNA KL+++FA+PFI ++DGHRD + C+AK+P  L  + SG+ DG++++W+L  R        H G V+GL V   G+   + G D TV+ W++      +         +P+   + K  F  +DH  +  +FAT G QVDIW+  RS P+ ++ WG D+  S++FNP E +IL++   DRSI LYD R  +P +K+I+  +TN++ WNPME   FT+ANE+ N Y+YD R ++    VH DHVSAV+D+D+SPTG+EFV+ S+D+++RIF    GHSRE+YHTKRMQ V CV+ S D  YV+ GSD+ N+R+WKA ASE+LG++ PRER    Y + +K ++ H P++KRI RHRHLPR +Y     ++ M EA R+K+  R+ HS PGS+     +K+ ++  VE
Sbjct:    5 VLCRNPDDYVRETKRDLQRVPRNYDPALHPFEVPREYTRALNATKLERVFAKPFIASLDGHRDGVNCIAKHPKSLSTVLSGACDGEVKIWNLTKRECSRTIQAHDGFVRGLCVRFCGTSFFTVGDDKTVKQWSMESPGYGEK-------VEPIRTILGKTVFTGIDHHMNDAIFATCGQQVDIWDEQRSAPMRSYAWGVDSISSIKFNPIETHILSSCGTDRSIVLYDKRKPTPLKKIILEMRTNTLCWNPMEAFIFTAANENFNLYTYDMRYMDGPVKVHMDHVSAVLDVDYSPTGKEFVSASFDKSIRIFPVQSGHSREVYHTKRMQHVTCVRWSADNKYVLCGSDEMNIRIWKANASEKLGLLSPRERAAQNYNQKLKEKFHHHPQIKRIARHRHLPRSIYSQIKEQQIMREARRKKDVNRRKHSKPGSVPIPSEKKKHVLAVVE 445

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BLAST of g.arboreum_cottongen_reftransV1_0004080 vs. ExPASy Swiss-Prot
Match: DCA13_XENLA (DDB1- and CUL4-associated factor 13 OS=Xenopus laevis GN=dcaf13 PE=2 SV=1)

HSP 1 Score: 429.869 bits (1104), Expect = 1.634e-143
Identity = 203/448 (45.31%), Postives = 293/448 (65.40%), Query Frame = 3

Query:  108 VISRSTDEFTRERSQDLQRVFRNFDPSLRSQEKAVEYVRALNAAKLDKIFARPFIGAMDGHRDSIKCMAKNPNYLKAIFSGSDDGDIRLWDLASRRTVCQFPGHQGAVQGLTVSTDGSVLVSCGSDCTVRLWNVPDANLADSDNLSDNSAKPVAVYVWKNAFRAVDHQWDGDLFATAGAQVDIWNHNRSQPVNTFDWGADTTISVRFNPGEPNILATSANDRSITLYDLRMSSPARKVIMRTKTNSIAWNPMEPMNFTSANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKCSCDASYVISGSDDTNLRLWKAKASEQLGVVLPRERKKHEYLEAVKNRYKHLPEVKRIVRHRHLPRPVYKAANLRRTMIXXXXXXXXXXXXHSAPGSIVTEPVRKRRIIKEVE 1451
            V+ R+ D++ RE  +DLQRV RN+DP+L   E + EY RALNA KL+++FA+PFI ++DGHRD + C+AK+P  L  + SG+ DG++++W+L  R        H G V+GL V   G+   + G D TV+ W +      +         +P+   + K  F  +DH     +FAT G QVDIW+  RS P+ ++ WG D+  SVRFNP E +IL++   DRSI LYD R  +P +K+I+  +TN++ WNPME   FT+ANE+ N Y+YD R ++    VH DHVSAV+D+D+SPTG+E V+ S+D+++RIF    GHSRE+YHTKRMQ V CV+ S D  YV+ GSD+ N+R+WKA ASE+LGV+ PRER    Y + +K +++H P++KRI RHRHLPR +Y     ++ M EA R+K+  R+ HS PGS+     +K+ ++  VE
Sbjct:    5 VLCRNPDDYVRETKRDLQRVPRNYDPALHPFEVSREYTRALNATKLERVFAKPFIASLDGHRDGVNCIAKHPKSLSTVLSGACDGEVKIWNLTKRECSRTIQAHDGFVRGLCVRFCGTSFFTVGDDKTVKQWAMESPGYGEK-------VEPMRTILGKTVFTGIDHHVKDAVFATCGQQVDIWDEQRSAPMRSYAWGVDSISSVRFNPVETHILSSCGTDRSIVLYDKRKPTPLKKIILEMRTNALCWNPMEAFIFTAANENFNLYTYDMRYMDSPVKVHMDHVSAVLDVDYSPTGKELVSASFDKSIRIFPVQSGHSREVYHTKRMQHVTCVRWSADNKYVLCGSDEMNIRIWKANASEKLGVLSPRERAAQNYNQKLKEKFQHHPQIKRIARHRHLPRSIYSQIKEQQIMREARRKKDVNRRKHSKPGSVPIPSEKKKHVLAVVE 445

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BLAST of g.arboreum_cottongen_reftransV1_0004080 vs. ExPASy Swiss-Prot
Match: DCA13_HUMAN (DDB1- and CUL4-associated factor 13 OS=Homo sapiens GN=DCAF13 PE=1 SV=2)

HSP 1 Score: 427.172 bits (1097), Expect = 1.581e-142
Identity = 198/433 (45.73%), Postives = 288/433 (66.51%), Query Frame = 3

Query:  108 VISRSTDEFTRERSQDLQRVFRNFDPSLRSQEKAVEYVRALNAAKLDKIFARPFIGAMDGHRDSIKCMAKNPNYLKAIFSGSDDGDIRLWDLASRRTVCQFPGHQGAVQGLTVSTDGSVLVSCGSDCTVRLWNVPDANLADSDNLSDNSAKPVAVYVWKNAFRAVDHQWDGDLFATAGAQVDIWNHNRSQPVNTFDWGADTTISVRFNPGEPNILATSANDRSITLYDLRMSSPARKVIMRTKTNSIAWNPMEPMNFTSANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKCSCDASYVISGSDDTNLRLWKAKASEQLGVVLPRERKKHEYLEAVKNRYKHLPEVKRIVRHRHLPRPVYKAANLRRTMIXXXXXXXXXXXXHSAPGSI 1406
            ++SR+ D + RE   DLQRV RN+DP+L   E   EY+RALNA KL+++FA+PF+ ++DGHRD + C+AK+P  L  + SG+ DG++R+W+L  R  +     H+G V+G+     G+   + G D TV+ W +      D +       +P+   + K  +  +DH W   +FAT G QVDIW+  R+ P+ +  WG D+  SV+FNP E  +L + A+DR+I LYD+R ++P +KVI+  +TN+I WNPME   FT+ANED N Y++D R L+    VH DHVSAV+D+D+SPTG+EFV+ S+D+++RIF  +   SRE+YHTKRMQ V CVK + D+ Y++ GSD+ N+RLWKA ASE+LGV+  RE+   +Y + +K +++H P +KRI RHRHLP+ +Y     +R M EA RRKE  R  HS PGS+
Sbjct:    5 MLSRNPDNYVRETKLDLQRVPRNYDPALHPFEVPREYIRALNATKLERVFAKPFLASLDGHRDGVNCLAKHPEKLATVLSGACDGEVRIWNLTQRNCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTVKQWKMDGPGYGDEE-------EPLHTILGKTVYTGIDHHWKEAVFATCGQQVDIWDEQRTNPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMRQATPLKKVILDMRTNTICWNPMEAFIFTAANEDYNLYTFDMRALDTPVMVHMDHVSAVLDVDYSPTGKEFVSASFDKSIRIFPVDKSRSREVYHTKRMQHVICVKWTSDSKYIMCGSDEMNIRLWKANASEKLGVLTSREKAAKDYNQKLKEKFQHYPHIKRIARHRHLPKSIYSQIQEQRIMKEARRRKEVNRIKHSKPGSV 430

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BLAST of g.arboreum_cottongen_reftransV1_0004080 vs. ExPASy Swiss-Prot
Match: DCA13_DANRE (DDB1- and CUL4-associated factor 13 OS=Danio rerio GN=dcaf13 PE=2 SV=1)

HSP 1 Score: 426.402 bits (1095), Expect = 3.441e-142
Identity = 208/448 (46.43%), Postives = 295/448 (65.85%), Query Frame = 3

Query:  108 VISRSTDEFTRERSQDLQRVFRNFDPSLRSQEKAVEYVRALNAAKLDKIFARPFIGAMDGHRDSIKCMAKNPNYLKAIFSGSDDGDIRLWDLASRRTVCQFPGHQGAVQGLTVSTDGSVLVSCGSDCTVRLWNVPDANLADSDNLSDNSAKPVAVYVWKNAFRAVDHQWDGDLFATAGAQVDIWNHNRSQPVNTFDWGADTTISVRFNPGEPNILATSANDRSITLYDLRMSSPARKVIMRTKTNSIAWNPMEPMNFTSANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKCSCDASYVISGSDDTNLRLWKAKASEQLGVVLPRERKKHEYLEAVKNRYKHLPEVKRIVRHRHLPRPVYKAANLRRTMIXXXXXXXXXXXXHSAPGSIVTEPVRKRRIIKEVE 1451
            V+ R+ D++ RE ++D+QRV RN+DP+L   E   EY RALNA KL+++FA+PF+ ++DGHRD I C+ K+   L  + SG+ DG++++W+L  R        H+G V+G+     G+   + G D T++ WN+        +       +P+   + K  F  +DH      F T G  VDIW+  RS PV +F WG D+  SVR+NP EP++LA+ A+DRSI LYD R S+P RKVIM+ ++N++ WNPME   FT ANED N Y+YD R L+    VH DHVSAV+D+D+SPTGREFV+ S+D+T+RIF  + GHSRE+YHTKRMQ V CVK S D+ +++SGSD+ N+RLWKA ASE+LGV+  RE+    Y + +  +++H P+V+RI RHRHLPR V K     + M EA RRKEQ  + HS PGS+     +++ ++K VE
Sbjct:    5 VLCRNPDDYVRETTRDIQRVPRNYDPTLHPFEVPREYTRALNATKLERVFAKPFVASLDGHRDVISCITKHAKSLSTVISGACDGEVKVWNLPKRECTRTVQAHEGFVRGICSRFCGTSFFTVGDDKTIKQWNMEAPGYGVRE-------EPINTILGKAVFTGIDHHQREGTFVTCGQTVDIWDEQRSSPVLSFSWGVDSFSSVRYNPVEPDLLASCASDRSIVLYDTRESAPLRKVIMQLRSNTLCWNPMEAYYFTCANEDYNLYTYDIRNLDVPVTVHMDHVSAVLDVDYSPTGREFVSASFDKTIRIFPKDKGHSREVYHTKRMQHVICVKWSADSKFIMSGSDEMNIRLWKANASEKLGVLSTREKTAANYNKKLIQKFQHHPQVRRIARHRHLPRDVLKQKRELKEMKEARRRKEQNVRKHSKPGSVPLLTEKEKHVVKVVE 445

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BLAST of g.arboreum_cottongen_reftransV1_0004080 vs. ExPASy Swiss-Prot
Match: DCA13_PONAB (DDB1- and CUL4-associated factor 13 OS=Pongo abelii GN=DCAF13 PE=2 SV=1)

HSP 1 Score: 426.017 bits (1094), Expect = 4.411e-142
Identity = 199/433 (45.96%), Postives = 287/433 (66.28%), Query Frame = 3

Query:  108 VISRSTDEFTRERSQDLQRVFRNFDPSLRSQEKAVEYVRALNAAKLDKIFARPFIGAMDGHRDSIKCMAKNPNYLKAIFSGSDDGDIRLWDLASRRTVCQFPGHQGAVQGLTVSTDGSVLVSCGSDCTVRLWNVPDANLADSDNLSDNSAKPVAVYVWKNAFRAVDHQWDGDLFATAGAQVDIWNHNRSQPVNTFDWGADTTISVRFNPGEPNILATSANDRSITLYDLRMSSPARKVIMRTKTNSIAWNPMEPMNFTSANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKCSCDASYVISGSDDTNLRLWKAKASEQLGVVLPRERKKHEYLEAVKNRYKHLPEVKRIVRHRHLPRPVYKAANLRRTMIXXXXXXXXXXXXHSAPGSI 1406
            ++SR+ D + RE   DLQRV RN+DP+L   E   EYVRALNA KL+++FA+PF+ ++DGHRD + C+AK+P  L  + SG+ DG++R+W+L  R  +     H+G V+G+     G+   + G D TV+ W +      D +       +P+   + K  +  +DH W   +FAT G QVDIW+  R+ PV +  WG D+  SV+FNP E  +L + A+DR+I LYD+R ++P +KVI+  +TN+I WNPME   FT+ANED N Y++D   L+    VH DHVSAV+D+D+SPTG+EFV+ S+D+++RIF  +   SRE+YHTKRMQ V CVK + D+ Y++ GSD+ N+RLWKA ASE+LGV+  RE+   +Y + +K +++H P +KRI RHRHLP+ +Y     +R M EA RRKE  R  HS PGS+
Sbjct:    5 MLSRNPDNYVRETKLDLQRVPRNYDPTLHPFEVPREYVRALNATKLERVFAKPFLASLDGHRDGVNCLAKHPKNLATVLSGACDGEVRIWNLTQRNCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTVKQWKMDGPGYGDEE-------EPLHTILGKTVYTGIDHHWKEAVFATCGQQVDIWDEQRTNPVCSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMRQATPLKKVILDMRTNTICWNPMEAFIFTAANEDYNLYTFDMSALDTPVMVHMDHVSAVLDVDYSPTGKEFVSASFDKSIRIFPVDKSRSREVYHTKRMQHVICVKWTSDSKYIMCGSDEMNIRLWKANASEKLGVLTSREKAAKDYNQKLKEKFQHYPHIKRIARHRHLPKSIYSQIQEQRIMKEARRRKEVNRIKHSKPGSV 430

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0004080 vs. ExPASy Swiss-Prot
Match: DCA13_DICDI (DDB1- and CUL4-associated factor 13 OS=Dictyostelium discoideum GN=wdsof1 PE=3 SV=1)

HSP 1 Score: 404.831 bits (1039), Expect = 9.138e-134
Identity = 189/408 (46.32%), Postives = 271/408 (66.42%), Query Frame = 3

Query:  108 VISRSTDEFTRERSQDLQRVFRNFDPSLRSQEKAVEYVRALNAAKLDKIFARPFIGAMDGHRDSIKCMAKNPNYLKAIFSGSDDGDIRLWDLASRRTVCQFPGHQGAVQGLTVSTDGSVLVSCGSDCTVRLW--NVPDANLADSDNLSDNSAKPVAVYVWKNAFRAVDHQWDGDLFATAG-AQVDIWNHNRSQPVNTFDWGADTTISVRFNPGEPNILATSANDRSITLYDLRMSSPARKVIMRTKTNSIAWNPMEPMNFTSANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKCSCDASYVISGSDDTNLRLWKAKASEQLGVVLPRERKKHEYLEAVKNRYKHLPEVKRIVRHRHLPRPVYK 1322
            VISRS +E T+E++ D++++ RN DP+L   E+  EYVRALNA KLD++FA+PFIG++ GH D I  M ++P  L  + SGS DG I+LW+L S         H G V+GL  + DG  +VSCG D T+++W  ++P+            + + +++Y  KNAF ++DHQ +   FAT+G   V+IW H RS P+ T  WG  T   V+FNP E ++LA+   DR I LYD+R +SPA+K+    ++NSIAW P E      ANED N Y YD R L +A  VH+DHV +V+DID+SPTGRE V+GSYD+T+RIF  +   SRE+Y+T RMQR+F V  + D+ +++SGSDD N+R+WKA +S  LG++  RE++K EY + +K ++K +PE+K I  HR +P+ VYK
Sbjct:    5 VISRSEEEETKEKASDVRKLHRNLDPNLHPFERPREYVRALNATKLDRVFAKPFIGSLSGHTDGIFTMTRHPTLLNNVASGSCDGVIKLWNLTSLTERTTVQAHNGFVRGLVFTPDGKHMVSCGEDKTIKMWKLDLPEYTF---------NQEVISIYNGKNAFTSIDHQLNSTTFATSGPTSVEIWKHQRSTPIQTLQWGHSTITKVKFNPIETHLLASCTTDRDIILYDIRENSPAQKLTTSMRSNSIAWCPTESFTLAIANEDENVYQYDIRNLSKAMTVHRDHVGSVLDIDYSPTGREIVSGSYDKTIRIFPVDSYKSREVYYTNRMQRIFSVLFTADSRFILSGSDDMNIRVWKANSSAPLGILSNREKEKLEYQDKIKEKFKEIPELKTIATHRRVPQLVYK 403

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0004080 vs. ExPASy Swiss-Prot
Match: DCA13_SCHPO (Protein sof1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sof1 PE=3 SV=1)

HSP 1 Score: 402.905 bits (1034), Expect = 3.295e-133
Identity = 209/445 (46.97%), Postives = 287/445 (64.49%), Query Frame = 3

Query:  108 VISRSTDEFTRERSQDLQRVFRNFDPSLRSQEKAVEYVRALNAAKLDKIFARPFIGAMD-GHRDSIKCMAKNPNYLKAIFSGSDDGDIRLWDLASRRTVCQFPGHQGAVQGLTVSTDGSVLVSCGSDCTVRLWNVPDANLADSDNLSDNSAKPVAVYVWKNAFRAVDHQWDGDLFATAGAQVDIWNHNRSQPVNTFDWGADTTISVRFNPGEPNILATSANDRSITLYDLRMSSPARKVIMRTKTNSIAWNPMEPMNFTSANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKCSCDASYVISGSDDTNLRLWKAKASEQLGVVLPRERKKHEYLEAVKNRYKHLPEVKRIVRHRHLPRPVYKAANLRRTMIXXXXXXXXXXXXHSAPGSIVTEPVRKRRII 1439
             I+R T   TR   QD   V RN DPSL   E+A EY RALNA K+D++FA PF+G +  GH+D +  +A++   L    SGS DG ++LWD + R        H+G V+GL  S  G VL SC SD  V + N  D  +  S             Y+  ++   +D    GDLFAT+G  V IW+++R  PV  F+WGADT   V+FN  E ++LA++  DRSI +YDLR SSP  K+I + +TNSI+WNPME  NF + +ED N Y YD R L+ A  V+KDHVSAVM +DFSPTG+EFV+GSYD+T+RI+    GHSR++YHTKRMQRV  VK S DA Y+ SGSDD+N+RLW+A+AS +  +   RE  + +YL++++ RYKH+PE++RI RHRHLP  V KAA ++R  I + +R+E+  + HS  G++  E  R+R ++
Sbjct:    5 TITRGT-SLTRLNDQDP--VKRNLDPSLHPFERAREYTRALNATKMDRMFAAPFLGQLGRGHQDGVYSLARDTKTLIDCASGSGDGAVKLWDASERCERWTSKAHEGIVRGLVFSNQGDVL-SCASDRYVYMLNKQDGKVKRS-------------YLGDSSLLDIDTSKGGDLFATSGENVSIWDYSRDTPVTKFEWGADTLPVVKFNYTETSVLASAGMDRSIVIYDLRTSSPLTKLITKLRTNSISWNPMEAFNFVAGSEDHNLYMYDMRNLKRALHVYKDHVSAVMSVDFSPTGQEFVSGSYDKTIRIYNVREGHSRDVYHTKRMQRVTAVKFSMDAQYIFSGSDDSNVRLWRARASSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARHRHLPTNVKKAAEIKREEINSLKRREENIRRHSKKGAVPYEKERERHVV 432

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0004080 vs. ExPASy Swiss-Prot
Match: DCA13_YEAST (Protein SOF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SOF1 PE=1 SV=1)

HSP 1 Score: 400.208 bits (1027), Expect = 1.745e-131
Identity = 193/427 (45.20%), Postives = 279/427 (65.34%), Query Frame = 3

Query:  108 VISRSTDEFTRERSQDLQRVFRNFDPSLRSQEKAVEYVRALNAAKLDKIFARPFIGAMD-GHRDSIKCMAKNPNYLKAIFSGSDDGDIRLWDLASRRTVCQFPGHQGAVQGLTVST-----------DGSVLVSCGSDCTVRLWNV-----PDANLADSDNLSDNSAKPVAVYVWKNAFRAVDHQWDGDLFATAGAQVDIWNHNRSQPVNTFDWGADTTISVRFNPGEPNILATSANDRSITLYDLRMSSPARKVIMRTKTNSIAWNPMEPMNFTSANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKCSCDASYVISGSDDTNLRLWKAKASEQLGVVLPRERKKHEYLEAVKNRYKHLPEVKRIVRHRHLPRPVYKAANLR 1337
             I RS D++   +S    ++ RN +P L   E+A EY +ALNA KL+++FA+PF+G +  GHRD +  +AKN   L  + +GS DG I+ W++++R     F  H G V GL V+              + ++SC  D TV+LW++      + N +D+D+++ N    +  +  ++AF+ +D   +   FAT GA++ +W+ NR +PV+   WGAD   S++FN  E +ILA++ +D SI LYDLR +SP +K++   +TN+I WNPME  NF +ANED N Y YD R L  +  V KDHVSAVMD+DFSPTG E VTGSYD+++RI++ N GHSREIYHTKRMQ VF VK S D+ Y+ISGSDD N+RLW++KA E+  V   RE+ K EY E +K R++H+PE+KRI RHRH+P+ + KA  ++
Sbjct:    5 TIKRSADDYVPVKSTQESQMPRNLNPELHPFERAREYTKALNATKLERMFAKPFVGQLGYGHRDGVYAIAKNYGSLNKLATGSADGVIKYWNMSTREEFVSFKAHYGLVTGLCVTQPRFHDKKPDLKSQNFMLSCSDDKTVKLWSINVDDYSNKNSSDNDSVT-NEEGLIRTFDGESAFQGIDSHRENSTFATGGAKIHLWDVNRLKPVSDLSWGADNITSLKFNQNETDILASTGSDNSIVLYDLRTNSPTQKIVQTMRTNAICWNPMEAFNFVTANEDHNAYYYDMRNLSRSLNVFKDHVSAVMDVDFSPTGDEIVTGSYDKSIRIYKTNHGHSREIYHTKRMQHVFQVKYSMDSKYIISGSDDGNVRLWRSKAWERSNVKTTREKNKLEYDEKLKERFRHMPEIKRISRHRHVPQVIKKAQEIK 430

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0004080 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0004080 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0004080 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0P7R3_GOSAR	0.000e+0	100.00	DDB1-and CUL4-associated factor 13 OS=Gossypium ar...	[more]
A0A0D2PW75_GOSRA	0.000e+0	99.11	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061E573_THECC	0.000e+0	95.09	Nucleotide binding,protein binding OS=Theobroma ca...	[more]
U5FHE1_POPTR	0.000e+0	87.50	Transducin family protein OS=Populus trichocarpa G...	[more]
E0CTI3_VITVI	0.000e+0	87.72	Putative uncharacterized protein OS=Vitis vinifera...	[more]
A0A059A0D2_EUCGR	0.000e+0	85.94	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
A0A067JJL4_JATCU	0.000e+0	85.04	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
B9RVU4_RICCO	0.000e+0	84.38	U3 small nucleolar RNA (U3 snorna) associated prot...	[more]
A0A067DNC0_CITSI	0.000e+0	84.82	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
A0A0A0K1Y9_CUCSA	0.000e+0	83.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0004080 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
DCA13_CHICK	1.482e-147	46.21	DDB1- and CUL4-associated factor 13 OS=Gallus gall...	[more]
DCA13_MOUSE	5.033e-145	44.87	DDB1- and CUL4-associated factor 13 OS=Mus musculu...	[more]
DCA13_XENTR	1.302e-143	44.87	DDB1- and CUL4-associated factor 13 OS=Xenopus tro...	[more]
DCA13_XENLA	1.634e-143	45.31	DDB1- and CUL4-associated factor 13 OS=Xenopus lae...	[more]
DCA13_HUMAN	1.581e-142	45.73	DDB1- and CUL4-associated factor 13 OS=Homo sapien...	[more]
DCA13_DANRE	3.441e-142	46.43	DDB1- and CUL4-associated factor 13 OS=Danio rerio...	[more]
DCA13_PONAB	4.411e-142	45.96	DDB1- and CUL4-associated factor 13 OS=Pongo abeli...	[more]
DCA13_DICDI	9.138e-134	46.32	DDB1- and CUL4-associated factor 13 OS=Dictyosteli...	[more]
DCA13_SCHPO	3.295e-133	46.97	Protein sof1 OS=Schizosaccharomyces pombe (strain ...	[more]
DCA13_YEAST	1.745e-131	45.20	Protein SOF1 OS=Saccharomyces cerevisiae (strain A...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 410..430
None	No IPR available	PANTHER	PTHR22851	U3 SMALL NUCLEOLAR RNA U3 SNORNA ASSOCIATED PROTEIN	coord: 1..452
None	No IPR available	PANTHER	PTHR22851:SF0	DDB1- AND CUL4-ASSOCIATED FACTOR 13	coord: 1..452
IPR020472	G-protein beta WD-40 repeat	PRINTS	PR00320	GPROTEINBRPT	coord: 347..361 score: 33.62 coord: 124..138 score: 36.43 coord: 82..96 score: 41.82
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 192..232 e-value: 0.06 score: 22.5 coord: 278..317 e-value: 7.4E-6 score: 35.5 coord: 153..189 e-value: 260.0 score: 1.7 coord: 98..137 e-value: 4.4E-9 score: 46.2 coord: 319..360 e-value: 0.013 score: 24.7 coord: 236..274 e-value: 250.0 score: 1.8 coord: 55..95 e-value: 5.7E-5 score: 32.5
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 62..95 e-value: 2.5E-4 score: 21.7 coord: 328..360 e-value: 7.7E-4 score: 20.1 coord: 282..316 e-value: 1.0E-4 score: 22.8 coord: 102..137 e-value: 1.6E-6 score: 28.6
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 105..146 score: 14.118
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 62..104 score: 13.85
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 285..326 score: 11.177
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 328..369 score: 9.105
IPR007287	Sof1-like protein	PFAM	PF04158	Sof1	coord: 361..447 e-value: 3.4E-30 score: 104.0
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 48..361 e-value: 8.2E-59 score: 198.5
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 124..138
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 82..96
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 62..369 score: 34.17
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 58..360

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0004080 ID=g.arboreum_cottongen_reftransV1_0004080; Name=g.arboreum_cottongen_reftransV1_0004080; organism=Gossypium arboreum; type=contig; length=1721bp
GGGTTTTAGTTTGACTCTCCATTCCGTAAGGGTTTTGCTTTCTGAGGACC
GAGATTCTCCGAAGAAAGAGAGAGAGAAATAGGAAGTGAAAGAAAATGAA
GGTGAAAGTAATATCACGTTCTACAGATGAGTTCACTCGAGAACGAAGCC
AAGATCTGCAGAGGGTGTTTCGTAATTTCGACCCCAGCCTACGATCCCAA
GAGAAAGCCGTCGAGTACGTCCGAGCTCTTAACGCAGCCAAATTGGACAA
GATATTTGCAAGACCCTTTATTGGAGCTATGGATGGGCATAGAGATTCCA
TTAAGTGTATGGCAAAGAACCCAAATTACTTGAAAGCAATTTTTTCTGGT
TCTGACGACGGAGATATCCGACTTTGGGATTTAGCTTCCAGGCGAACAGT
TTGTCAATTTCCTGGTCACCAAGGTGCTGTACAAGGTTTGACAGTATCAA
CAGATGGAAGCGTTCTTGTATCATGTGGAAGTGATTGCACTGTTAGGCTC
TGGAATGTTCCTGATGCTAATCTTGCAGATTCAGATAATCTTTCTGATAA
TTCAGCTAAGCCGGTAGCAGTTTATGTTTGGAAGAATGCATTCCGGGCTG
TTGATCACCAATGGGATGGTGACCTCTTTGCCACAGCTGGTGCTCAAGTA
GATATATGGAATCACAATAGGTCTCAGCCAGTGAACACTTTTGATTGGGG
AGCAGACACAACTATATCTGTTCGATTTAATCCAGGAGAGCCGAATATCT
TGGCAACATCAGCTAATGATCGGAGCATAACATTGTATGATCTGCGAATG
TCATCCCCGGCAAGGAAAGTTATTATGAGGACGAAAACCAATTCTATTGC
TTGGAACCCAATGGAGCCTATGAACTTCACTTCGGCAAATGAGGATTGCA
ATTGCTACAGCTATGATGCCAGAAAGCTGGAGGAGGCCAAGTGTGTGCAC
AAAGATCATGTTTCTGCAGTAATGGATATTGATTTCTCACCAACTGGTCG
GGAATTTGTAACTGGATCTTATGATAGAACAGTCAGAATTTTCCAGTATA
ATGGTGGTCACAGTCGAGAAATCTACCATACGAAGAGAATGCAAAGGGTA
TTCTGTGTGAAGTGTAGCTGTGATGCCAGTTATGTCATTTCGGGAAGTGA
TGATACTAACCTTAGGCTCTGGAAAGCTAAAGCATCAGAACAATTGGGAG
TGGTACTTCCAAGGGAAAGAAAGAAACATGAGTATCTTGAAGCTGTTAAG
AATCGTTACAAGCATCTGCCTGAAGTTAAGCGTATTGTGAGGCACAGGCA
CTTGCCAAGACCAGTTTATAAGGCAGCCAACCTTAGACGCACTATGATTG
AAGCAGAAAGAAGGAAAGAACAAAGAAGGAAAGCTCACAGTGCCCCTGGA
AGCATTGTGACTGAACCGGTTCGTAAAAGAAGAATAATCAAAGAGGTTGA
GTGAGTTGTCCTGAGGAACTTCCTTGAACAAGCATCAGCACTGCATATCT
GCAGTTCTCTGTAGCCGAATGTTAGTTGACTGCAATTCCTGAATTTCGTG
ACTTTTGTGCTCGACCCTCAACTAAATGTAGGCTGTAGTAAGCTGAGGCA
GCTTCTTTTTGTTTCAATTAACAGTTTTGTCACACAAAAAGTTGATAGAT
GTATTTGTAATTGTAATGAATATTATAATCTGGTTTTAAGGCTTATTAAC
GAATGAAAAAATGGATACTGG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR020472	G-protein_beta_WD-40_rep
IPR001680	WD40_rpt
IPR007287	Sof1
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR019775	WD40_repeat_CS
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Search form

g.arboreum_cottongen_reftransV1_0004080, g.arboreum_cottongen_reftransV1_0004080 (contig) Gossypium arboreum

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