g.arboreum_cottongen_reftransV1_0006804, g.arboreum_cottongen_reftransV1_0006804 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0006804
Unique Name	g.arboreum_cottongen_reftransV1_0006804
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	331

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr3	chromosome	g.arboreum_cottongen_reftransV1_0006804:1..331 . Chr3:41009127..41009457 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: A0A0B0NW57_GOSAR (Cellulose synthase-like protein D3 OS=Gossypium arboreum GN=F383_19785 PE=4 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 9.992e-69
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA
Sbjct:  890 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 998

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: A0A0D2N3T6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G257300 PE=4 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.030e-68
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA
Sbjct:  890 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 998

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: A0A0D2QFY2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G052200 PE=4 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.276e-68
Identity = 108/109 (99.08%), Postives = 109/109 (100.00%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLASPRMK+LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA
Sbjct:  891 TGSVEIFFSRNNALLASPRMKILQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 999

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: A0A0B0NST5_GOSAR (Cellulose synthase-like protein D3 OS=Gossypium arboreum GN=F383_10451 PE=4 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.276e-68
Identity = 108/109 (99.08%), Postives = 109/109 (100.00%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLASPRMK+LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA
Sbjct:  891 TGSVEIFFSRNNALLASPRMKILQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 999

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: F6HEF7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0039g02020 PE=4 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 5.485e-68
Identity = 106/109 (97.25%), Postives = 109/109 (100.00%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLASPRMKLLQR+AYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLL+ITVTLC+LAVLEIKWSGIELEEWWRNEQFWLIGGTSA
Sbjct:  896 TGSVEIFFSRNNALLASPRMKLLQRVAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLVITVTLCMLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 1004

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: W9QDD3_9ROSA (Cellulose synthase-like protein D3 OS=Morus notabilis GN=L484_019681 PE=4 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 9.637e-68
Identity = 106/109 (97.25%), Postives = 108/109 (99.08%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLASPRMK LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLC+LAVLEI+WSGIELEEWWRNEQFWLIGGTSA
Sbjct:  893 TGSVEIFFSRNNALLASPRMKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCMLAVLEIRWSGIELEEWWRNEQFWLIGGTSA 1001

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: A0A067JP46_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00552 PE=4 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.763e-67
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLASPRMK LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFL YLL+ITVTLCLLA+LEIKWSGIELEEWWRNEQFWLIGGTSA
Sbjct:  888 TGSVEIFFSRNNALLASPRMKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLVITVTLCLLAILEIKWSGIELEEWWRNEQFWLIGGTSA 996

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: A0A058ZXT3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00085 PE=4 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.763e-67
Identity = 106/109 (97.25%), Postives = 108/109 (99.08%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLL IT+TLC+LAVLEIKWSGIELEEWWRNEQFWLIGGTSA
Sbjct:  885 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLTITLTLCMLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 993

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: A0A061EYA4_THECC (Cellulose synthase-like D3 OS=Theobroma cacao GN=TCM_025462 PE=4 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 3.592e-67
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNA LASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLL ITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA
Sbjct:  922 TGSVEIFFSRNNAFLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLTITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 1030

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: L0ATQ4_POPTO (Cellulose synthase-like protein OS=Populus tomentosa PE=4 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 4.772e-67
Identity = 106/109 (97.25%), Postives = 107/109 (98.17%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLASPRMK LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFL YLLIIT+TLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA
Sbjct:  890 TGSVEIFFSRNNALLASPRMKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLAYLLIITLTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 998

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLD3_ARATH (Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 4.817e-66
Identity = 100/109 (91.74%), Postives = 104/109 (95.41%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNA  ASPRMK+LQRIAYLNVGIYPFTS FLIVYCFLPALSLFSGQFIVQTLNVTFL YLLII++TLCLLA+LEIKWSGI LEEWWRNEQFWLIGGTSA
Sbjct:  892 TGSVEIFFSRNNAFFASPRMKILQRIAYLNVGIYPFTSFFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLIISITLCLLALLEIKWSGISLEEWWRNEQFWLIGGTSA 1000

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSJ (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. japonica GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 5.932e-66
Identity = 101/109 (92.66%), Postives = 106/109 (97.25%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNAL AS +MK+LQRIAYLNVGIYPFTS+FLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIIT+TLCLLA+LEIKWSGI LEEWWRNEQFWLIGGTSA
Sbjct:  872 TGSVEIFFSRNNALFASSKMKVLQRIAYLNVGIYPFTSVFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITITLCLLAMLEIKWSGIALEEWWRNEQFWLIGGTSA 980

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSI (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. indica GN=CSLD1 PE=3 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 5.932e-66
Identity = 101/109 (92.66%), Postives = 106/109 (97.25%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNAL AS +MK+LQRIAYLNVGIYPFTS+FLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIIT+TLCLLA+LEIKWSGI LEEWWRNEQFWLIGGTSA
Sbjct:  872 TGSVEIFFSRNNALFASSKMKVLQRIAYLNVGIYPFTSVFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITITLCLLAMLEIKWSGIALEEWWRNEQFWLIGGTSA 980

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLD2_ARATH (Cellulose synthase-like protein D2 OS=Arabidopsis thaliana GN=CSLD2 PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 9.887e-66
Identity = 101/109 (92.66%), Postives = 106/109 (97.25%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLAS +MK+LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFL YLLII++TLCLLA+LEIKWSGI LEEWWRNEQFWLIGGTSA
Sbjct:  892 TGSVEIFFSRNNALLASSKMKILQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLIISITLCLLALLEIKWSGISLEEWWRNEQFWLIGGTSA 1000

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSJ (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.164e-65
Identity = 100/109 (91.74%), Postives = 106/109 (97.25%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLAS +MK LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIV+TLNVTFLTYLL+IT+T+C+LAVLEIKWSGI LEEWWRNEQFWLIGGTSA
Sbjct:  917 TGSVEIFFSRNNALLASRKMKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVRTLNVTFLTYLLVITLTMCMLAVLEIKWSGISLEEWWRNEQFWLIGGTSA 1025

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSI (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica GN=CSLD2 PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.164e-65
Identity = 100/109 (91.74%), Postives = 106/109 (97.25%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLAS +MK LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIV+TLNVTFLTYLL+IT+T+C+LAVLEIKWSGI LEEWWRNEQFWLIGGTSA
Sbjct:  917 TGSVEIFFSRNNALLASRKMKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVRTLNVTFLTYLLVITLTMCMLAVLEIKWSGISLEEWWRNEQFWLIGGTSA 1025

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLD5_ARATH (Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 2.283e-57
Identity = 86/109 (78.90%), Postives = 100/109 (91.74%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNA+ A+ RMK LQR+AY NVG+YPFTS+FLIVYC LPA+SLFSGQFIVQ+L++TFL YLL IT+TLC+L++LEIKWSGI L EWWRNEQFW+IGGTSA
Sbjct:  928 TGSVEIFFSRNNAIFATRRMKFLQRVAYFNVGMYPFTSLFLIVYCILPAISLFSGQFIVQSLDITFLIYLLSITLTLCMLSLLEIKWSGITLHEWWRNEQFWVIGGTSA 1036

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLD6_ARATH (Putative cellulose synthase-like protein D6 OS=Arabidopsis thaliana GN=CSLD6 PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.011e-57
Identity = 88/109 (80.73%), Postives = 99/109 (90.83%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNA+ A P++KLLQRIAYLNVGIYPFTSIF++ YCFLP LSLFSG F+V+TL  +FL YLLIIT++LC LAVLE+KWSGI LEEWWRNEQFWLIGGTSA
Sbjct:  727 TGSVEIFFSRNNAIFAGPKLKLLQRIAYLNVGIYPFTSIFILTYCFLPPLSLFSGHFVVETLTGSFLIYLLIITLSLCGLAVLEVKWSGISLEEWWRNEQFWLIGGTSA 835

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLD1_ARATH (Cellulose synthase-like protein D1 OS=Arabidopsis thaliana GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 8.268e-57
Identity = 86/109 (78.90%), Postives = 101/109 (92.66%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFS+NNA+ A+ R+K LQR+AYLNVGIYPFTSIFL+VYCFLPAL LFSG+FIVQ+L++ FL+YLL ITVTL L+++LE+KWSGI LEEWWRNEQFWLIGGTSA
Sbjct:  785 TGSVEIFFSKNNAMFATRRLKFLQRVAYLNVGIYPFTSIFLVVYCFLPALCLFSGKFIVQSLDIHFLSYLLCITVTLTLISLLEVKWSGIGLEEWWRNEQFWLIGGTSA 893

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLD4_ARATH (Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 3.639e-56
Identity = 86/109 (78.90%), Postives = 100/109 (91.74%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNA+LAS R+K LQR+AYLNVGIYPFTS+FLI+YCFLPA SLFSGQFIV+TL+++FL YLL+IT+ L  LAVLE+KWSGI LEEWWRNEQ+WLI GTS+
Sbjct:  853 TGSVEIFFSRNNAILASKRLKFLQRLAYLNVGIYPFTSLFLILYCFLPAFSLFSGQFIVRTLSISFLVYLLMITICLIGLAVLEVKWSGIGLEEWWRNEQWWLISGTSS 961

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0NW57_GOSAR	9.992e-69	100.00	Cellulose synthase-like protein D3 OS=Gossypium ar...	[more]
A0A0D2N3T6_GOSRA	1.030e-68	100.00	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2QFY2_GOSRA	2.276e-68	99.08	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0NST5_GOSAR	2.276e-68	99.08	Cellulose synthase-like protein D3 OS=Gossypium ar...	[more]
F6HEF7_VITVI	5.485e-68	97.25	Putative uncharacterized protein OS=Vitis vinifera...	[more]
W9QDD3_9ROSA	9.637e-68	97.25	Cellulose synthase-like protein D3 OS=Morus notabi...	[more]
A0A067JP46_JATCU	2.763e-67	96.33	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
A0A058ZXT3_EUCGR	2.763e-67	97.25	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
A0A061EYA4_THECC	3.592e-67	98.17	Cellulose synthase-like D3 OS=Theobroma cacao GN=T...	[more]
L0ATQ4_POPTO	4.772e-67	97.25	Cellulose synthase-like protein OS=Populus tomento...	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
CSLD3_ARATH	4.817e-66	91.74	Cellulose synthase-like protein D3 OS=Arabidopsis ...	[more]
CSLD1_ORYSJ	5.932e-66	92.66	Cellulose synthase-like protein D1 OS=Oryza sativa...	[more]
CSLD1_ORYSI	5.932e-66	92.66	Cellulose synthase-like protein D1 OS=Oryza sativa...	[more]
CSLD2_ARATH	9.887e-66	92.66	Cellulose synthase-like protein D2 OS=Arabidopsis ...	[more]
CSLD2_ORYSJ	1.164e-65	91.74	Cellulose synthase-like protein D2 OS=Oryza sativa...	[more]
CSLD2_ORYSI	1.164e-65	91.74	Cellulose synthase-like protein D2 OS=Oryza sativa...	[more]
CSLD5_ARATH	2.283e-57	78.90	Cellulose synthase-like protein D5 OS=Arabidopsis ...	[more]
CSLD6_ARATH	6.011e-57	80.73	Putative cellulose synthase-like protein D6 OS=Ara...	[more]
CSLD1_ARATH	8.268e-57	78.90	Cellulose synthase-like protein D1 OS=Arabidopsis ...	[more]
CSLD4_ARATH	3.639e-56	78.90	Cellulose synthase-like protein D4 OS=Arabidopsis ...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005150	Cellulose synthase	PFAM	PF03552	Cellulose_synt	coord: 1..90 e-value: 3.5E-44 score: 151.3
None	No IPR available	PANTHER	PTHR13301:SF65	SUBFAMILY NOT NAMED	coord: 1..90
None	No IPR available	PANTHER	PTHR13301	X-BOX TRANSCRIPTION FACTOR-RELATED	coord: 1..90
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 65..90
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..11
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 47..64
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 36..46
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..35
None	No IPR available	TMHMM	TMhelix		coord: 7..29
None	No IPR available	TMHMM	TMhelix		coord: 39..61

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0006804 ID=g.arboreum_cottongen_reftransV1_0006804; Name=g.arboreum_cottongen_reftransV1_0006804; organism=Gossypium arboreum; type=contig; length=331bp
TGGGCACTTGTGCCCCCAATTAACCAAAACTGCTCGTTTCTCCACCATTC
TTCTAACTCAATACCAGACCACTTGATTTCTAGCACGGCAAGCAAACAAA
GAGTTACAGTAATGATGAGGAGGTATGTAAGGAAAGTGACATTGAGGGTC
TGCACGATGAACTGGCCGGAGAAGAGGGAAAGTGCGGGAAGGAAGCAGTA
GACAATCAGGAAAATCGAGGTAAAGGGGTAGATTCCGACGTTTAGATATG
CAATCCTCTGCAATAACTTCATTCGTGGACTGGCGAGGAGAGCATTGTTA
CGGGAAAAGAAGATCTCAACAGAGCCAGTTG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR005150	Cellulose_synth

Vocabulary: **Molecular Function**
Term	Definition
GO:0016760	cellulose synthase (UDP-forming) activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0030244	cellulose biosynthetic process

Search form

g.arboreum_cottongen_reftransV1_0006804, g.arboreum_cottongen_reftransV1_0006804 (contig) Gossypium arboreum

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