g.arboreum_cottongen_reftransV1_0008536, g.arboreum_cottongen_reftransV1_0008536 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008536 vs. ExPASy TrEMBL
Match: A0A0D2PQF6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G122700 PE=4 SV=1) HSP 1 Score: 336.265 bits (861), Expect = 1.712e-114 Identity = 161/164 (98.17%), Postives = 163/164 (99.39%), Query Frame = -3 Query: 104 AAAALISAKPKDPTFHLISIKLTSFKINLSNINADLTLTVHVTNPNITPIHYSSTTMSIFYDGSFLGEAHVKAGSQPPRSCRVLELPARLDGIELAHHAGKFFADVAKREMALDAKVEISGTAKMLWWEHRFKVHVECHVTVDPVFLDVIDQENESQLELFLAS 595 AAAALISAKPKDPTFHLISIKLTSFKINLSNINADLTLTVHVTNPNITPIHYSST MSIFY+GSFLGEAHVKAGSQPPRSCRVLELPARLDG+ELAHHAGKFFADVAKREMALDAKVEISGTAKMLWWEHRFKVHVECHVTVDPVFLDVIDQENESQLELFLAS Sbjct: 28 AAAALISAKPKDPTFHLISIKLTSFKINLSNINADLTLTVHVTNPNITPIHYSSTAMSIFYNGSFLGEAHVKAGSQPPRSCRVLELPARLDGVELAHHAGKFFADVAKREMALDAKVEISGTAKMLWWEHRFKVHVECHVTVDPVFLDVIDQENESQLELFLAS 191
BLAST of g.arboreum_cottongen_reftransV1_0008536 vs. ExPASy TrEMBL
Match: A0A061GU68_THECC (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family OS=Theobroma cacao GN=TCM_041382 PE=4 SV=1) HSP 1 Score: 274.633 bits (701), Expect = 2.755e-90 Identity = 127/159 (79.87%), Postives = 145/159 (91.19%), Query Frame = -3 Query: 107 LISAKPKDPTFHLISIKLTSFKINLSNINADLTLTVHVTNPNITPIHYSSTTMSIFYDGSFLGEAHVKAGSQPPRSCRVLELPARLDGIELAHHAGKFFADVAKREMALDAKVEISGTAKMLWWEHRFKVHVECHVTVDPVFLDVIDQENESQLELFLA 583 L+SAKPKDPTFHLISI LTSFK+ L +I+A+L LTVHVTNPNI P+HYSSTTMSIFY+GS LG A VKAGSQPPRSC++L+LP RLDG+ELAHHAGKFFADVAKREM LDAKV+I G AK+LWW+H+F VHV+ HVTVDPVFLDVIDQEN+SQLELF+A Sbjct: 25 LLSAKPKDPTFHLISINLTSFKLKLPHIDAELILTVHVTNPNIAPVHYSSTTMSIFYEGSLLGAAQVKAGSQPPRSCQLLKLPTRLDGVELAHHAGKFFADVAKREMLLDAKVDIGGKAKVLWWDHKFNVHVDSHVTVDPVFLDVIDQENKSQLELFVA 183
BLAST of g.arboreum_cottongen_reftransV1_0008536 vs. ExPASy TrEMBL
Match: A0A0D2MRV6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G010300 PE=4 SV=1) HSP 1 Score: 273.478 bits (698), Expect = 7.931e-90 Identity = 125/164 (76.22%), Postives = 145/164 (88.41%), Query Frame = -3 Query: 104 AAAALISAKPKDPTFHLISIKLTSFKINLSNINADLTLTVHVTNPNITPIHYSSTTMSIFYDGSFLGEAHVKAGSQPPRSCRVLELPARLDGIELAHHAGKFFADVAKREMALDAKVEISGTAKMLWWEHRFKVHVECHVTVDPVFLDVIDQENESQLELFLAS 595 A A L+SA+PKDPTFHL+SIKLT+FK+NL +++A+L LTVHVTNPNI PIHY ST MSIFY+G+ LG A VKAGSQ RSC+VL+LP RLDG+ELAHHAGKFFADVAKREM LDA+V+I G AK+LWW HRFKVHV+ H+TVDPVFLDVIDQEN SQLE+FLAS Sbjct: 21 AVATLLSARPKDPTFHLVSIKLTAFKLNLPHVDAELILTVHVTNPNIAPIHYGSTAMSIFYEGTLLGAAQVKAGSQRARSCQVLKLPTRLDGVELAHHAGKFFADVAKREMVLDAQVDIGGKAKVLWWGHRFKVHVDSHITVDPVFLDVIDQENRSQLEIFLAS 184
BLAST of g.arboreum_cottongen_reftransV1_0008536 vs. ExPASy TrEMBL
Match: B9SCV5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1281780 PE=4 SV=1) HSP 1 Score: 264.618 bits (675), Expect = 1.913e-86 Identity = 121/163 (74.23%), Postives = 143/163 (87.73%), Query Frame = -3 Query: 107 AAAALISAKPKDPTFHLISIKLTSFKINLSNINADLTLTVHVTNPNITPIHYSSTTMSIFYDGSFLGEAHVKAGSQPPRSCRVLELPARLDGIELAHHAGKFFADVAKREMALDAKVEISGTAKMLWWEHRFKVHVECHVTVDPVFLDVIDQENESQLELFLA 595 A AL++AKPKDPTFHLISI TSFK+NL ++ADL LTVHVTNPNIT IHYSST+MSIFYDGS LG A V+AGSQP RSC++L L ARLDG++LAHHA KFF+DVAKR+M LDAKV+I G AK+LWW+H+FKVHV+ H TVDPVFLDVIDQEN+SQL++F+A Sbjct: 22 AVTALLNAKPKDPTFHLISISFTSFKLNLPVLDADLLLTVHVTNPNITSIHYSSTSMSIFYDGSLLGSAQVEAGSQPARSCKLLRLQARLDGLQLAHHASKFFSDVAKRQMLLDAKVDIEGAAKVLWWDHKFKVHVDSHTTVDPVFLDVIDQENKSQLDVFVA 184
BLAST of g.arboreum_cottongen_reftransV1_0008536 vs. ExPASy TrEMBL
Match: W9QJ47_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022324 PE=4 SV=1) HSP 1 Score: 257.299 bits (656), Expect = 1.498e-83 Identity = 119/159 (74.84%), Postives = 139/159 (87.42%), Query Frame = -3 Query: 107 LISAKPKDPTFHLISIKLTSFKINLSNINADLTLTVHVTNPNITPIHYSSTTMSIFYDGSFLGEAHVKAGSQPPRSCRVLELPARLDGIELAHHAGKFFADVAKREMALDAKVEISGTAKMLWWEHRFKVHVECHVTVDPVFLDVIDQENESQLELFLA 583 LI AKPKDPTFHLISI LTSFK+NL ++A+L LTVHVTNPNI+PIHYSSTTMSIFY G LG A V+AGSQPPRSC++L LPARLDG+ LAHHA +FF+DVAKREM LDA V+I GTA++LWW+H+FKVHV+ HVTVDP+FLDVI QEN+S+L L LA Sbjct: 25 LIGAKPKDPTFHLISINLTSFKLNLPVLDAELILTVHVTNPNISPIHYSSTTMSIFYQGELLGSADVQAGSQPPRSCQLLRLPARLDGLRLAHHAARFFSDVAKREMLLDAAVDIGGTARVLWWDHKFKVHVDSHVTVDPLFLDVIGQENKSELTLNLA 183
BLAST of g.arboreum_cottongen_reftransV1_0008536 vs. ExPASy TrEMBL
Match: M5WKP8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021034mg PE=4 SV=1) HSP 1 Score: 248.825 bits (634), Expect = 3.471e-80 Identity = 112/155 (72.26%), Postives = 135/155 (87.10%), Query Frame = -3 Query: 107 KPKDPTFHLISIKLTSFKINLSNINADLTLTVHVTNPNITPIHYSSTTMSIFYDGSFLGEAHVKAGSQPPRSCRVLELPARLDGIELAHHAGKFFADVAKREMALDAKVEISGTAKMLWWEHRFKVHVECHVTVDPVFLDVIDQENESQLELFLA 571 KPKDPTFHLISI LTSFK+NL ++ DL L VHVTNPNIT +HYSST+MSIFY+GS LG A V+AGSQPP+SC++L LPARLDG++LAHHA F ADVAKREM LDA V+I+G A++LWW+H+FKVHV+ VTVDPVFLDVIDQEN+ ++E+FLA Sbjct: 29 KPKDPTFHLISINLTSFKLNLPVLDTDLILNVHVTNPNITAVHYSSTSMSIFYNGSLLGSAEVQAGSQPPKSCQLLRLPARLDGLQLAHHAATFVADVAKREMVLDAAVDIAGAARILWWDHKFKVHVDSRVTVDPVFLDVIDQENKLEMEIFLA 183
BLAST of g.arboreum_cottongen_reftransV1_0008536 vs. ExPASy TrEMBL
Match: A0A067KHC8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12694 PE=4 SV=1) HSP 1 Score: 248.054 bits (632), Expect = 6.964e-80 Identity = 116/163 (71.17%), Postives = 135/163 (82.82%), Query Frame = -3 Query: 107 AAAALISAKPKDPTFHLISIKLTSFKINLSNINADLTLTVHVTNPNITPIHYSSTTMSIFYDGSFLGEAHVKAGSQPPRSCRVLELPARLDGIELAHHAGKFFADVAKREMALDAKVEISGTAKMLWWEHRFKVHVECHVTVDPVFLDVIDQENESQLELFLA 595 A AL++AKPKDP F LISI LTSFK NL ++A+L LTVHV NPNI IHYSSTTMSI YDGS LG A V+A SQPPRSC++L L ARLDG++LAHHA KFF DVAKREM LDA V+I G AK+LWW+H+FKVHV+ VTVDP+FLDVIDQEN+SQL +F+A Sbjct: 21 AVTALLNAKPKDPVFQLISINLTSFKFNLPVLDAELVLTVHVNNPNIASIHYSSTTMSIHYDGSLLGSAQVEADSQPPRSCKLLRLQARLDGLQLAHHASKFFYDVAKREMVLDATVDIVGAAKVLWWDHKFKVHVDSRVTVDPLFLDVIDQENKSQLNVFVA 183
BLAST of g.arboreum_cottongen_reftransV1_0008536 vs. ExPASy TrEMBL
Match: B9GI01_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s22600g PE=4 SV=1) HSP 1 Score: 245.743 bits (626), Expect = 5.325e-79 Identity = 114/160 (71.25%), Postives = 136/160 (85.00%), Query Frame = -3 Query: 107 LISAKPKDPTFHLISIKLTSFKINLSNINADLTLTVHVTNPNITPIHYSSTTMSIFYDGSFLGEAHVKAGSQPPRSCRVLELPARLDGIEL-AHHAGKFFADVAKREMALDAKVEISGTAKMLWWEHRFKVHVECHVTVDPVFLDVIDQENESQLELFLA 583 LISAKPKDPTFHLI I TSFK+ I+ D+ LTVHVTNPNI PIHYSST MSIFYDGS +G A V+AGSQ RSC++LEL ARLDG+EL A+H+ KFF+DVAKREM LDAKV+I GTA++LWW HRF VHV+ H+TVDP+FLD+IDQEN+S+L++FLA Sbjct: 25 LISAKPKDPTFHLIKINFTSFKLRFPVIDTDVILTVHVTNPNIIPIHYSSTIMSIFYDGSLIGSAQVEAGSQRSRSCQILELTARLDGVELMANHSVKFFSDVAKREMVLDAKVDIGGTARLLWWGHRFNVHVDSHITVDPLFLDIIDQENKSRLDVFLA 184
BLAST of g.arboreum_cottongen_reftransV1_0008536 vs. ExPASy TrEMBL
Match: M4DSE4_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra019437 PE=4 SV=1) HSP 1 Score: 244.973 bits (624), Expect = 1.023e-78 Identity = 114/155 (73.55%), Postives = 132/155 (85.16%), Query Frame = -3 Query: 107 KPKDPTFHLISIKLTSFKINLSNINADLTLTVHVTNPNITPIHYSSTTMSIFYDGSFLGEAHVKAGSQPPRSCRVLELPARLDGIELAHHAGKFFADVAKREMALDAKVEISGTAKMLWWEHRFKVHVECHVTVDPVFLDVIDQENESQLELFLA 571 KPKDPTFHLISI LTS K+NL ++A+L LTVHVTNPNI IHYSSTTMSI YDG+ LG A VKAGSQP RSC++L LPARLDG+ELAHHA KFFADVAKREM L+AK++I G AK+LWW+H F+VHV+ VTVDPVFLD+I QEN SQ++L LA Sbjct: 29 KPKDPTFHLISIDLTSLKLNLPVLDAELMLTVHVTNPNIAAIHYSSTTMSILYDGTVLGTAEVKAGSQPARSCQLLRLPARLDGMELAHHARKFFADVAKREMKLEAKLDIEGAAKVLWWDHSFRVHVDSFVTVDPVFLDIIGQENRSQMDLLLA 183
BLAST of g.arboreum_cottongen_reftransV1_0008536 vs. ExPASy TrEMBL
Match: A0A078IAX6_BRANA (BnaA06g39030D protein OS=Brassica napus GN=BnaA06g39030D PE=4 SV=1) HSP 1 Score: 244.973 bits (624), Expect = 1.178e-78 Identity = 114/155 (73.55%), Postives = 132/155 (85.16%), Query Frame = -3 Query: 107 KPKDPTFHLISIKLTSFKINLSNINADLTLTVHVTNPNITPIHYSSTTMSIFYDGSFLGEAHVKAGSQPPRSCRVLELPARLDGIELAHHAGKFFADVAKREMALDAKVEISGTAKMLWWEHRFKVHVECHVTVDPVFLDVIDQENESQLELFLA 571 KPKDPTFHLISI LTS K+NL ++A+L LTVHVTNPNI IHYSSTTMSI YDG+ LG A VKAGSQP RSC++L LPARLDG+ELAHHA KFFADVAKREM L+AK++I G AK+LWW+H F+VHV+ VTVDPVFLD+I QEN SQ++L LA Sbjct: 32 KPKDPTFHLISIDLTSLKLNLPVLDAELMLTVHVTNPNIAAIHYSSTTMSILYDGTVLGTAEVKAGSQPARSCQLLRLPARLDGMELAHHARKFFADVAKREMKLEAKLDIEGAAKVLWWDHSFRVHVDSFVTVDPVFLDIIGQENRSQMDLLLA 186 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008536 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0008536 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0008536 ID=g.arboreum_cottongen_reftransV1_0008536; Name=g.arboreum_cottongen_reftransV1_0008536; organism=Gossypium arboreum; type=contig; length=597bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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