g.arboreum_cottongen_reftransV1_0011628, g.arboreum_cottongen_reftransV1_0011628 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0011628
Unique Name	g.arboreum_cottongen_reftransV1_0011628
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	1367

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr10	chromosome	g.arboreum_cottongen_reftransV1_0011628:1..1367 . Chr10:68638298..68640533 +		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011628 vs. ExPASy TrEMBL
Match: A0A0B0PF61_GOSAR (Kinesin light chain 4 OS=Gossypium arboreum GN=F383_30016 PE=4 SV=1)

HSP 1 Score: 447.203 bits (1149), Expect = 2.092e-152
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = -3

Query:  670 KDMAVVMKQQDRAEEAIEAIKSFRDRCSKQAQESLDNVLIDLYKKCGRIEEQIQLLKQKLRMIYQGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQQENYLAAEVVYRKAQIIDPDANKACNLCQCLIKQARYIEAQSVLKEVIHGKLPGSGDPKSRNRVKXXXXXXXXXXXXXIASTAIGLNSEDTFLAEGIDQLMSQWTSYRSRRLPIFEEISSFRDQLAC 1365
            KDMAVVMKQQDRAEEAIEAIKSFRDRCSKQAQESLDNVLIDLYKKCGRIEEQIQLLKQKLRMIYQGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQQENYLAAEVVYRKAQIIDPDANKACNLCQCLIKQARYIEAQSVLKEVIHGKLPGSGDPKSRNRVKELLQELESEQLISIASTAIGLNSEDTFLAEGIDQLMSQWTSYRSRRLPIFEEISSFRDQLAC
Sbjct:   64 KDMAVVMKQQDRAEEAIEAIKSFRDRCSKQAQESLDNVLIDLYKKCGRIEEQIQLLKQKLRMIYQGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQQENYLAAEVVYRKAQIIDPDANKACNLCQCLIKQARYIEAQSVLKEVIHGKLPGSGDPKSRNRVKELLQELESEQLISIASTAIGLNSEDTFLAEGIDQLMSQWTSYRSRRLPIFEEISSFRDQLAC 295

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011628 vs. ExPASy TrEMBL
Match: A0A0D2VML0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G160800 PE=4 SV=1)

HSP 1 Score: 438.343 bits (1126), Expect = 6.437e-149
Identity = 227/232 (97.84%), Postives = 231/232 (99.57%), Query Frame = -3

Query:  670 KDMAVVMKQQDRAEEAIEAIKSFRDRCSKQAQESLDNVLIDLYKKCGRIEEQIQLLKQKLRMIYQGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQQENYLAAEVVYRKAQIIDPDANKACNLCQCLIKQARYIEAQSVLKEVIHGKLPGSGDPKSRNRVKXXXXXXXXXXXXXIASTAIGLNSEDTFLAEGIDQLMSQWTSYRSRRLPIFEEISSFRDQLAC 1365
            KDMAVVMKQQDRAEEAIEAIKSFRDRCSKQAQESLDNVLIDLYKKCGRIEEQIQLLKQKLRMIYQGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQQENYLAAEVVYRKAQIIDPDANKACNLCQCLIKQARYIEA+SVL+EVI GKLPGSGDPKSRNRVKELLQELESEQLISIASTAIGLN+EDTFLAEG+DQLMSQWTSYRSRRLPIFEEISSFRDQLAC
Sbjct:   64 KDMAVVMKQQDRAEEAIEAIKSFRDRCSKQAQESLDNVLIDLYKKCGRIEEQIQLLKQKLRMIYQGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQQENYLAAEVVYRKAQIIDPDANKACNLCQCLIKQARYIEARSVLEEVIQGKLPGSGDPKSRNRVKELLQELESEQLISIASTAIGLNAEDTFLAEGLDQLMSQWTSYRSRRLPIFEEISSFRDQLAC 295

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011628 vs. ExPASy TrEMBL
Match: A0A0D2UUF0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G160800 PE=4 SV=1)

HSP 1 Score: 435.261 bits (1118), Expect = 1.008e-148
Identity = 225/230 (97.83%), Postives = 229/230 (99.57%), Query Frame = -3

Query:  670 MAVVMKQQDRAEEAIEAIKSFRDRCSKQAQESLDNVLIDLYKKCGRIEEQIQLLKQKLRMIYQGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQQENYLAAEVVYRKAQIIDPDANKACNLCQCLIKQARYIEAQSVLKEVIHGKLPGSGDPKSRNRVKXXXXXXXXXXXXXIASTAIGLNSEDTFLAEGIDQLMSQWTSYRSRRLPIFEEISSFRDQLAC 1359
            MAVVMKQQDRAEEAIEAIKSFRDRCSKQAQESLDNVLIDLYKKCGRIEEQIQLLKQKLRMIYQGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQQENYLAAEVVYRKAQIIDPDANKACNLCQCLIKQARYIEA+SVL+EVI GKLPGSGDPKSRNRVKELLQELESEQLISIASTAIGLN+EDTFLAEG+DQLMSQWTSYRSRRLPIFEEISSFRDQLAC
Sbjct:    1 MAVVMKQQDRAEEAIEAIKSFRDRCSKQAQESLDNVLIDLYKKCGRIEEQIQLLKQKLRMIYQGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQQENYLAAEVVYRKAQIIDPDANKACNLCQCLIKQARYIEARSVLEEVIQGKLPGSGDPKSRNRVKELLQELESEQLISIASTAIGLNAEDTFLAEGLDQLMSQWTSYRSRRLPIFEEISSFRDQLAC 230

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011628 vs. ExPASy TrEMBL
Match: A0A0D2RMT0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G160800 PE=4 SV=1)

HSP 1 Score: 433.335 bits (1113), Expect = 5.348e-147
Identity = 227/233 (97.42%), Postives = 231/233 (99.14%), Query Frame = -3

Query:  670 KDMAVVMKQQDRAEEAIEAIKSFRDRCSKQAQESLDNVLIDLYK-KCGRIEEQIQLLKQKLRMIYQGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQQENYLAAEVVYRKAQIIDPDANKACNLCQCLIKQARYIEAQSVLKEVIHGKLPGSGDPKSRNRVKXXXXXXXXXXXXXIASTAIGLNSEDTFLAEGIDQLMSQWTSYRSRRLPIFEEISSFRDQLAC 1365
            KDMAVVMKQQDRAEEAIEAIKSFRDRCSKQAQESLDNVLIDLYK KCGRIEEQIQLLKQKLRMIYQGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQQENYLAAEVVYRKAQIIDPDANKACNLCQCLIKQARYIEA+SVL+EVI GKLPGSGDPKSRNRVKELLQELESEQLISIASTAIGLN+EDTFLAEG+DQLMSQWTSYRSRRLPIFEEISSFRDQLAC
Sbjct:   64 KDMAVVMKQQDRAEEAIEAIKSFRDRCSKQAQESLDNVLIDLYKQKCGRIEEQIQLLKQKLRMIYQGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQQENYLAAEVVYRKAQIIDPDANKACNLCQCLIKQARYIEARSVLEEVIQGKLPGSGDPKSRNRVKELLQELESEQLISIASTAIGLNAEDTFLAEGLDQLMSQWTSYRSRRLPIFEEISSFRDQLAC 296

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011628 vs. ExPASy TrEMBL
Match: A0A061EKH3_THECC (Tetratricopeptide repeat-like superfamily protein OS=Theobroma cacao GN=TCM_020375 PE=4 SV=1)

HSP 1 Score: 409.838 bits (1052), Expect = 9.336e-138
Identity = 207/232 (89.22%), Postives = 218/232 (93.97%), Query Frame = -3

Query:  670 KDMAVVMKQQDRAEEAIEAIKSFRDRCSKQAQESLDNVLIDLYKKCGRIEEQIQLLKQKLRMIYQGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQQENYLAAEVVYRKAQIIDPDANKACNLCQCLIKQARYIEAQSVLKEVIHGKLPGSGDPKSRNRVKXXXXXXXXXXXXXIASTAIGLNSEDTFLAEGIDQLMSQWTSYRSRRLPIFEEISSFRDQLAC 1365
            KDMAVVMKQQDR EEAIEAIKSFRDRCSKQAQESLDNVLIDLYKKCGRI+EQIQLLKQKLRMIY+GEAFNGKPTKTARSHGKKFQVT+KQETSRILGNLGWAYMQQENYLAAE VYRKAQIIDPDANKACNLCQCLIKQARY+EA+SVL+ V+H KLPGS DPKSRNRVKEL QELES Q +++ASTAI LN ED FL EG+DQLMSQW  YRSRRLPIFEEISSFRDQLAC
Sbjct:   67 KDMAVVMKQQDRTEEAIEAIKSFRDRCSKQAQESLDNVLIDLYKKCGRIDEQIQLLKQKLRMIYEGEAFNGKPTKTARSHGKKFQVTIKQETSRILGNLGWAYMQQENYLAAEAVYRKAQIIDPDANKACNLCQCLIKQARYLEAESVLEYVVHDKLPGSSDPKSRNRVKELRQELESRQPVALASTAIELNLEDAFL-EGLDQLMSQWAPYRSRRLPIFEEISSFRDQLAC 297

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011628 vs. ExPASy TrEMBL
Match: M5XE54_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009277mg PE=4 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 2.105e-121
Identity = 187/232 (80.60%), Postives = 206/232 (88.79%), Query Frame = -3

Query:  670 KDMAVVMKQQDRAEEAIEAIKSFRDRCSKQAQESLDNVLIDLYKKCGRIEEQIQLLKQKLRMIYQGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQQENYLAAEVVYRKAQIIDPDANKACNLCQCLIKQARYIEAQSVLKEVIHGKLPGSGDPKSRNRVKXXXXXXXXXXXXXIASTAIGLNSEDTFLAEGIDQLMSQWTSYRSRRLPIFEEISSFRDQLAC 1365
            KDMAVVMKQQDRAEEAIEAIKSFRDRCSKQAQESLDNVLIDLYKKCGR+EEQI+LLKQKL MIYQGEAFNGK TKTARSHG+KFQVT+K+ETSRILGNLGWAYMQQ N++AAEVVYRKAQI+DPDANKACNLC CLIKQ RY+EAQSVL +V+ G L GS +PKS+ R KELLQELE  Q + ++S ++ LN ED FL EG+D LM  WT  RSRRLPIFEEISSFRDQLAC
Sbjct:   69 KDMAVVMKQQDRAEEAIEAIKSFRDRCSKQAQESLDNVLIDLYKKCGRVEEQIELLKQKLWMIYQGEAFNGKLTKTARSHGRKFQVTIKKETSRILGNLGWAYMQQGNHVAAEVVYRKAQIVDPDANKACNLCLCLIKQTRYVEAQSVLDDVLQGALSGSDEPKSKIRAKELLQELEQCQTVVLSSNSLSLNIEDAFL-EGLDHLMKHWTPLRSRRLPIFEEISSFRDQLAC 299

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011628 vs. ExPASy TrEMBL
Match: B9H094_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s17610g PE=4 SV=2)

HSP 1 Score: 365.54 bits (937), Expect = 2.209e-120
Identity = 189/232 (81.47%), Postives = 205/232 (88.36%), Query Frame = -3

Query:  670 KDMAVVMKQQDRAEEAIEAIKSFRDRCSKQAQESLDNVLIDLYKKCGRIEEQIQLLKQKLRMIYQGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQQENYLAAEVVYRKAQIIDPDANKACNLCQCLIKQARYIEAQSVLKEVIHGKLPGSGDPKSRNRVKXXXXXXXXXXXXXIASTAIGLNSEDTFLAEGIDQLMSQWTSYRSRRLPIFEEISSFRDQLAC 1365
            KDMAVVMKQQDRAEEAIEAIK+FRDRCSKQAQESLDNVLIDLYKKCG+IEEQI+LLKQKLRMI+QGEAFNGK TKTARSHG+KFQVTVKQETSRILGNLGWAYMQ+ NYLAAEVVYRKAQ IDPDANKACNL  CLIKQ RY EAQ+VL ++  GKL GS +PKSRNR +ELL ELE+ Q  S+ S   G + ED F+ EG+DQL SQWT YRSRRLPIFEEISSFRDQLAC
Sbjct:   61 KDMAVVMKQQDRAEEAIEAIKAFRDRCSKQAQESLDNVLIDLYKKCGKIEEQIELLKQKLRMIHQGEAFNGKATKTARSHGRKFQVTVKQETSRILGNLGWAYMQKGNYLAAEVVYRKAQSIDPDANKACNLGLCLIKQTRYAEAQAVLDDIFRGKLLGSDEPKSRNRAQELLCELETSQSSSMFSEPSGSSLEDVFV-EGLDQLTSQWTPYRSRRLPIFEEISSFRDQLAC 291

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011628 vs. ExPASy TrEMBL
Match: W9QV42_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019928 PE=4 SV=1)

HSP 1 Score: 365.155 bits (936), Expect = 2.887e-120
Identity = 184/233 (78.97%), Postives = 205/233 (87.98%), Query Frame = -3

Query:  670 KDMAVVMKQQDRAEEAIEAIKSFRDRCSKQAQESLDNVLIDLYK-KCGRIEEQIQLLKQKLRMIYQGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQQENYLAAEVVYRKAQIIDPDANKACNLCQCLIKQARYIEAQSVLKEVIHGKLPGSGDPKSRNRVKXXXXXXXXXXXXXIASTAIGLNSEDTFLAEGIDQLMSQWTSYRSRRLPIFEEISSFRDQLAC 1365
            KDMA+VMKQQDRAEEAIEAIKSFR+ CSKQAQESLDNVL+DLYK KCG++E+QI LLKQKLRMIYQGEAFNGKPTKTARSHG+KFQVT+KQETSRILGNLGWAYMQQ NYLAAEVVY KAQ IDPDANKACNLC CL+KQ RY EAQ+VL+ V+ GKL GS +PKSRNR +ELL+EL   Q    +S ++GL  ED FL EG+DQLM+QWT +RSRRLPIFEEIS FRDQLAC
Sbjct:   65 KDMAIVMKQQDRAEEAIEAIKSFRNLCSKQAQESLDNVLVDLYKQKCGKVEDQIDLLKQKLRMIYQGEAFNGKPTKTARSHGRKFQVTIKQETSRILGNLGWAYMQQGNYLAAEVVYSKAQEIDPDANKACNLCLCLMKQTRYSEAQTVLEHVLQGKLLGSDEPKSRNRAEELLKELNQCQSTVFSSNSLGLKIEDAFL-EGLDQLMNQWTPFRSRRLPIFEEISPFRDQLAC 296

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011628 vs. ExPASy TrEMBL
Match: B9RWK7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1020440 PE=4 SV=1)

HSP 1 Score: 361.688 bits (927), Expect = 6.266e-119
Identity = 186/232 (80.17%), Postives = 206/232 (88.79%), Query Frame = -3

Query:  670 KDMAVVMKQQDRAEEAIEAIKSFRDRCSKQAQESLDNVLIDLYKKCGRIEEQIQLLKQKLRMIYQGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQQENYLAAEVVYRKAQIIDPDANKACNLCQCLIKQARYIEAQSVLKEVIHGKLPGSGDPKSRNRVKXXXXXXXXXXXXXIASTAIGLNSEDTFLAEGIDQLMSQWTSYRSRRLPIFEEISSFRDQLAC 1365
            KDMA+VMKQQDRAEEAIEAIKSFRDRCSKQAQESLDNVLIDLYKKCG+IEEQI+LLKQKLRMIY+GEAFNGK TKTARSHGKKFQVT+KQETSRILGNLGWAYMQQ +YLAAEVVYRKAQ IDPDANKACNLC CLIKQ RY EA SVL +V+  KL GS DPKSR+RVKELL ELE+ Q   + S + GL+ ED F+ EG++QLMSQW+ +RS+RLPIFEEI+  RDQLAC
Sbjct:   67 KDMAIVMKQQDRAEEAIEAIKSFRDRCSKQAQESLDNVLIDLYKKCGKIEEQIELLKQKLRMIYEGEAFNGKRTKTARSHGKKFQVTIKQETSRILGNLGWAYMQQGSYLAAEVVYRKAQSIDPDANKACNLCLCLIKQTRYTEAHSVLNDVLQSKLSGSEDPKSRSRVKELLHELETCQSSVVTSPS-GLSLEDAFV-EGLEQLMSQWSPHRSKRLPIFEEITPCRDQLAC 296

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011628 vs. ExPASy TrEMBL
Match: A0A067J997_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06408 PE=4 SV=1)

HSP 1 Score: 361.303 bits (926), Expect = 1.015e-118
Identity = 186/232 (80.17%), Postives = 202/232 (87.07%), Query Frame = -3

Query:  670 KDMAVVMKQQDRAEEAIEAIKSFRDRCSKQAQESLDNVLIDLYKKCGRIEEQIQLLKQKLRMIYQGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQQENYLAAEVVYRKAQIIDPDANKACNLCQCLIKQARYIEAQSVLKEVIHGKLPGSGDPKSRNRVKXXXXXXXXXXXXXIASTAIGLNSEDTFLAEGIDQLMSQWTSYRSRRLPIFEEISSFRDQLAC 1365
            KDMAVVMKQQDRAEEAIEAIKSFR RCSKQAQESLDNVLIDLYKKCG+IE+QIQLLKQKLR+IY+GEAFNGK TKTARSHG+KFQVT+KQETSRILGNLGWAYMQQ +YL AEVVYRKAQ IDPDANKACNLC CLIKQARY EA SVL +V  GK+PGS DPKSR+R  ELL+ELE+ Q    A    GL+ ED F+ EG+DQLMSQ   YRSRRLPIFEEIS +RDQLAC
Sbjct:   70 KDMAVVMKQQDRAEEAIEAIKSFRHRCSKQAQESLDNVLIDLYKKCGKIEDQIQLLKQKLRLIYEGEAFNGKLTKTARSHGRKFQVTIKQETSRILGNLGWAYMQQGSYLEAEVVYRKAQSIDPDANKACNLCLCLIKQARYAEAHSVLDDVSQGKIPGSNDPKSRDRSTELLRELETCQSSLFAPKPSGLSLEDAFV-EGLDQLMSQVNPYRSRRLPIFEEISPYRDQLAC 300

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011628 vs. ExPASy Swiss-Prot
Match: SDI2_ARATH (Protein SULFUR DEFICIENCY-INDUCED 2 OS=Arabidopsis thaliana GN=At1g04770 PE=2 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 2.180e-101
Identity = 159/236 (67.37%), Postives = 196/236 (83.05%), Query Frame = -3

Query:  670 KDMAVVMKQQDRAEEAIEAIKSFRDRCSKQAQESLDNVLIDLYKKCGRIEEQIQLLKQKLRMIYQGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQQENYLAAEVVYRKAQIIDPDANKACNLCQCLIKQARYIEAQSVL-KEVIHGKLPGSGDPKSRNRVKXXXXXXXXXXXXXIASTAI--GLNSEDTFLAEGIDQLMSQW-TSYRSRRLPIFEEISSFRDQLAC 1365
            KDMA++MKQQ+RAEEAI+AI+SFRD CS+QAQESLDNVLIDLYKKCGRIEEQ++LLKQKL MIYQGEAFNGKPTKTARSHGKKFQVTV++ETSRILGNLGWAYMQ  +Y AAE VYRKAQ+I+PDANKACNLC CLIKQ ++ EA+S+L ++V+     GSGDP+   RV+ELL EL+ ++  + AS ++   +  ++  + EG+D+ + +W   YR+RRLPIFEEI   RDQLAC
Sbjct:   68 KDMALLMKQQNRAEEAIDAIQSFRDLCSRQAQESLDNVLIDLYKKCGRIEEQVELLKQKLWMIYQGEAFNGKPTKTARSHGKKFQVTVEKETSRILGNLGWAYMQLMDYTAAEAVYRKAQLIEPDANKACNLCTCLIKQGKHDEARSILFRDVLMENKEGSGDPRLMARVQELLSELKPQEEEAAASVSVECEVGIDEIAVVEGLDEFVKEWRRPYRTRRLPIFEEILPLRDQLAC 303

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011628 vs. ExPASy Swiss-Prot
Match: SDI1_ARATH (Protein SULFUR DEFICIENCY-INDUCED 1 OS=Arabidopsis thaliana GN=SDI1 PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 2.740e-93
Identity = 152/235 (64.68%), Postives = 189/235 (80.43%), Query Frame = -3

Query:  670 KDMAVVMKQQDRAEEAIEAIKSFRDRCSKQAQESLDNVLIDLYKKCGRIEEQIQLLKQKLRMIYQGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQQENYLAAEVVYRKAQIIDPDANKACNLCQCLIKQARYIEAQSVLKEVIHGKLPGSGDPKSRNRVKXXXXXXXXXXXXXIAS---TAIGLNSEDTFLAEGIDQLMSQWTSYRSRRLPIFEEISSFRDQLAC 1365
            KDMAVVMKQ DR+EEAIEAIKSFR RCSK +Q+SLDNVLIDLYKKCGR+EEQ++LLK+KLR IYQGEAFNGKPTKTARSHGKKFQVTV+QE SR+LGNLGWAYMQQ  YL+AE VYRKAQ+++PDANK+CNL  CLIKQ R+ E + VL +V+  ++ G+ D ++R R +ELL ELES       +     +G   +D F+  G++++ S  TS++S+RLPIFE+ISSFR+ L C
Sbjct:   75 KDMAVVMKQLDRSEEAIEAIKSFRPRCSKNSQDSLDNVLIDLYKKCGRMEEQVELLKRKLRQIYQGEAFNGKPTKTARSHGKKFQVTVQQEISRLLGNLGWAYMQQAKYLSAEAVYRKAQMVEPDANKSCNLAMCLIKQGRFEEGRLVLDDVLEYRVLGADDCRTRQRAEELLSELESSLPRMRDAEMEDVLGNILDDDFVL-GLEEMTS--TSFKSKRLPIFEQISSFRNTLVC 306

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011628 vs. ExPASy Swiss-Prot
Match: MS5L2_ARATH (Protein POLLENLESS 3-LIKE 2 OS=Arabidopsis thaliana GN=At3g51280 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.097e-61
Identity = 102/152 (67.11%), Postives = 124/152 (81.58%), Query Frame = -3

Query:  910 KDMAVVMKQQDRAEEAIEAIKSFRDRCSKQAQESLDNVLIDLYKKCGRIEEQIQLLKQKLRMIYQGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQQENYLAAEVVYRKAQIIDPDANKACNLCQCLIKQARYIEAQSVLKEV 1365
            KDMA+VMKQQ+RAEEAIEAIKS R RCS QAQESLDN+L+DLYK+CGR+++QI LLK KL +I +G AFNGK TKTARS GKKFQV+V+QE +R+LGNLGWA MQ++N++ AE  YR+A  I PD NK CNL  CL+KQ R  EA+  L+ V
Sbjct:   78 KDMAIVMKQQNRAEEAIEAIKSLRVRCSDQAQESLDNILLDLYKRCGRLDDQIGLLKHKLFLIQKGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQRDNFVEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIDEAKETLRRV 229

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011628 vs. ExPASy Swiss-Prot
Match: MS5_ARATH (Protein POLLENLESS 3 OS=Arabidopsis thaliana GN=MS5 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 1.600e-42
Identity = 79/152 (51.97%), Postives = 110/152 (72.37%), Query Frame = -3

Query:  910 KDMAVVMKQQDRAEEAIEAIKSFRDRCSKQAQESLDNVLIDLYKKCGRIEEQIQLLKQKLRMIYQGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQQENYLAAEVVYRKAQIIDPDANKACNLCQCLIKQARYIEAQSVLKEV 1365
            KDMAVVMKQ  R++E IEAIKSFR  CS ++Q+S+DN+L++LYKK GRIEE+  LL+ KL+ + QG  F G+ ++  R  GK   +T++QE +RILGNLGW ++Q  NY  AE  YR+A  ++ D NK CNL  CL++ +R  EA+S+L +V
Sbjct:   99 KDMAVVMKQLGRSDEGIEAIKSFRYLCSFESQDSIDNLLLELYKKSGRIEEEAVLLEHKLQTLEQGMGFGGRVSRAKRVQGKHVIMTIEQEKARILGNLGWVHLQLHNYGIAEQHYRRALGLERDKNKLCNLAICLMRMSRIPEAKSLLDDV 250

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011628 vs. ExPASy Swiss-Prot
Match: MS5L1_ARATH (Protein POLLENLESS 3-LIKE 1 OS=Arabidopsis thaliana GN=At5g44330 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 3.107e-38
Identity = 74/152 (48.68%), Postives = 104/152 (68.42%), Query Frame = -3

Query:  910 KDMAVVMKQQDRAEEAIEAIKSFRDRCSKQAQESLDNVLIDLYKKCGRIEEQIQLLKQKLRMIYQGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQQENYLAAEVVYRKAQIIDPDANKACNLCQCLIKQARYIEAQSVLKEV 1365
            KDM VV+KQ +R +E IEAIKSFR  C  ++Q+S+DN+L++LY K GRI E  +LL+ KLR + Q + + G+     RSH ++   T++QE +RILGNL W ++Q  NY  AE  YR A  ++PD NK CNL  CLI+  R  EA+S+L++V
Sbjct:   92 KDMVVVLKQLNRFDEGIEAIKSFRYLCPFESQDSIDNLLLELYMKSGRITEVAELLEHKLRTLEQDKHYGGRIKIAKRSHEEQNNKTIEQEKARILGNLAWVHLQLHNYGIAEQYYRNALSLEPDNNKLCNLAICLIRMERTHEAKSLLEDV 243

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0011628 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0011628 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0011628 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0PF61_GOSAR	2.092e-152	100.00	Kinesin light chain 4 OS=Gossypium arboreum GN=F38...	[more]
A0A0D2VML0_GOSRA	6.437e-149	97.84	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2UUF0_GOSRA	1.008e-148	97.83	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2RMT0_GOSRA	5.348e-147	97.42	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061EKH3_THECC	9.336e-138	89.22	Tetratricopeptide repeat-like superfamily protein ...	[more]
M5XE54_PRUPE	2.105e-121	80.60	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
B9H094_POPTR	2.209e-120	81.47	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
W9QV42_9ROSA	2.887e-120	78.97	Uncharacterized protein OS=Morus notabilis GN=L484...	[more]
B9RWK7_RICCO	6.266e-119	80.17	Putative uncharacterized protein OS=Ricinus commun...	[more]
A0A067J997_JATCU	1.015e-118	80.17	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0011628 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
SDI2_ARATH	2.180e-101	67.37	Protein SULFUR DEFICIENCY-INDUCED 2 OS=Arabidopsis...	[more]
SDI1_ARATH	2.740e-93	64.68	Protein SULFUR DEFICIENCY-INDUCED 1 OS=Arabidopsis...	[more]
MS5L2_ARATH	1.097e-61	67.11	Protein POLLENLESS 3-LIKE 2 OS=Arabidopsis thalian...	[more]
MS5_ARATH	1.600e-42	51.97	Protein POLLENLESS 3 OS=Arabidopsis thaliana GN=MS...	[more]
MS5L1_ARATH	3.107e-38	48.68	Protein POLLENLESS 3-LIKE 1 OS=Arabidopsis thalian...	[more]

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 4..24
None	No IPR available	COILS	Coil	Coil	coord: 37..57
None	No IPR available	PANTHER	PTHR36326	FAMILY NOT NAMED	coord: 1..212
None	No IPR available	PANTHER	PTHR36326:SF1	PROTEIN MALE STERILE 5	coord: 1..212
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 91..124 e-value: 0.0026 score: 27.0
IPR019734	Tetratricopeptide repeat	PFAM	PF13181	TPR_8	coord: 92..123 e-value: 0.0011 score: 18.9
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 91..124 score: 8.673
IPR011990	Tetratricopeptide-like helical domain	GENE3D	1.25.40.10		coord: 3..157 e-value: 7.9E-13 score: 47.2
IPR011990	Tetratricopeptide-like helical domain	SUPERFAMILY	48452	TPR-like	coord: 91..151 coord: 8..30
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 91..124 score: 8.654

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0011628 ID=g.arboreum_cottongen_reftransV1_0011628; Name=g.arboreum_cottongen_reftransV1_0011628; organism=Gossypium arboreum; type=contig; length=1367bp
TGGCATTAGGTATACAATTATACATTCCCGTGTTGAATGATATGATAGGG
TAAGAGTTAAAAGCCAAAAGGACCTCCATCCCCTTTCCTACTCCAAACAC
AATACATTCTCTATTTTAGCTCATTCTTTATTGTCTCGGCATCTTCAACA
TAAATGCCTTGCTTTCTAGGGAGCTGCAAATTAACCATGAATATCATACT
CACTTGCAAAAATCAATTCAGTCATGCCATTATTTTCTCCATTGCAATCC
CAAATCATACAGCTTTGCTGCCATCGGTGAACTAATAATGGTGCAAAAGG
AGGATCAACAACAGGCACAGCTCTCCATACCAACCAGTGTTCAACTCGTA
TTCTTATACGCCAGCAGTATCCCACATGCACCACGCTCTTCCCACACTAC
TTACCTGCCAACAAACTTGTTTCATTATTTAGAACTACATGCTAAAGAGC
ATCATCTTCTTGCAGAAGTCGCCAAACTAACTCAAACAGGCCAACTAAGG
TCCAAATCTTCATATGGTTTTGCTTATTTAGCAGTTACTGCTCCTAGTTC
CACTAGGCTACATACATGGCGCCTTGTTACAAAGGCACTCCTGAAGAAAG
TAACTGTCTCTAGCACACTCGTCAATATACAAACGGTTCTGGCGGAAGCA
TAAACAATCCATAAAATCAACAGGCTAACTGATCTCTGAACGAAGAGATT
TCTTCGAATATAGGAAGCCTCCTTGATCTGTATGAAGTCCATTGGCTCAT
CAACTGGTCAATACCTTCTGCTAGGAAAGTATCTTCTGAATTCAACCCTA
TTGCAGTAGAAGCTATTGATATGAGCTGTTCTGACTCCAATTCCTGTAGC
AGCTCCTTCACACGGTTTCTTGATTTGGGATCCCCAGATCCTGGAAGTTT
ACCATGTATTACTTCCTTGAGAACGGATTGTGCTTCAATGTAACGTGCTT
GCTTGATCAGACACTGGCAGAGGTTGCAAGCCTTGTTTGCATCAGGGTCG
ATTATCTGAGCTTTACGATAAACCACTTCTGCTGCTAAATAGTTCTCTTG
CTGCATGTATGCCCAACCCAAGTTTCCCAATATTCTAGAGGTCTCTTGCT
TGACAGTAACTTGGAACTTCTTCCCATGGGACCGTGCTGTCTTAGTAGGC
TTTCCATTGAAAGCCTCACCCTGGTAAATCATTCTAAGCTTCTGTTTCAA
TAATTGTATCTGCTCTTCAATTCTTCCACATTTCTTATACAAGTCAATGA
GGACATTGTCAAGTGATTCTTGAGCTTGCTTGGAGCAGCGGTCCCTGAAA
GACTTAATGGCTTCAATGGCTTCTTCAGCTCTATCCTGCTGTTTCATAAC
CACTGCCATGTCCTTCA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR019734	TPR_repeat
IPR011990	TPR-like_helical_dom_sf
IPR013026	TPR-contain_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Search form

g.arboreum_cottongen_reftransV1_0011628, g.arboreum_cottongen_reftransV1_0011628 (contig) Gossypium arboreum

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