g.arboreum_cottongen_reftransV1_0003503, g.arboreum_cottongen_reftransV1_0003503 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0003503
Unique Nameg.arboreum_cottongen_reftransV1_0003503
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length463
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr4chromosomeg.arboreum_cottongen_reftransV1_0003503:1..463 .
Chr4:32644565..32645694 +		n/a
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0003503 vs. ExPASy TrEMBL
Match: A0A0B0P3D1_GOSAR (Dicer-like protein 4 OS=Gossypium arboreum GN=F383_06347 PE=4 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 4.247e-99
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1 
Query:    1 GCYQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYVDFITSSPDRGLFEGPKCPKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSVQLNPIREVQELSQCYNWDL 462
            GCYQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYVDFITSSPDRGLFEGPKCPKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSVQLNPIREVQELSQCYNWDL
Sbjct: 1207 GCYQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYVDFITSSPDRGLFEGPKCPKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSVQLNPIREVQELSQCYNWDL 1360
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BLAST of g.arboreum_cottongen_reftransV1_0003503 vs. ExPASy TrEMBL
Match: A0A0D2Q9H6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G053300 PE=4 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 1.345e-97
Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 1 
Query:    1 GCYQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYVDFIT-SSPDRGLFEGPKCPKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSVQLNPIREVQELSQCYNWDL 462
            GCYQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYVDFIT SSPDRGLFEGPKCPKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSVQLNPIREVQELSQCYNWDL
Sbjct: 1094 GCYQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYVDFITSSSPDRGLFEGPKCPKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSVQLNPIREVQELSQCYNWDL 1248
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BLAST of g.arboreum_cottongen_reftransV1_0003503 vs. ExPASy TrEMBL
Match: A0A0D2TJW7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G053300 PE=4 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 1.493e-97
Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 1 
Query:    1 GCYQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYVDFIT-SSPDRGLFEGPKCPKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSVQLNPIREVQELSQCYNWDL 462
            GCYQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYVDFIT SSPDRGLFEGPKCPKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSVQLNPIREVQELSQCYNWDL
Sbjct: 1093 GCYQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYVDFITSSSPDRGLFEGPKCPKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSVQLNPIREVQELSQCYNWDL 1247
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BLAST of g.arboreum_cottongen_reftransV1_0003503 vs. ExPASy TrEMBL
Match: A0A0D2UGS1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G053300 PE=4 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 2.635e-97
Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 1 
Query:    1 GCYQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYVDFIT-SSPDRGLFEGPKCPKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSVQLNPIREVQELSQCYNWDL 462
            GCYQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYVDFIT SSPDRGLFEGPKCPKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSVQLNPIREVQELSQCYNWDL
Sbjct: 1244 GCYQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYVDFITSSSPDRGLFEGPKCPKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSVQLNPIREVQELSQCYNWDL 1398
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BLAST of g.arboreum_cottongen_reftransV1_0003503 vs. ExPASy TrEMBL
Match: A0A061GID4_THECC (Dicer-like protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_037118 PE=4 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 3.260e-87
Identity = 140/154 (90.91%), Postives = 146/154 (94.81%), Query Frame = 1 
Query:    1 GCYQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYVDFITSSPDRGLFEGPKCPKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSVQLNPIREVQELSQCYNWDL 462
            GCYQRLEFLGDAVLDYLITSYLFS+YPKLKPGQLTDLRSVSVNNKSFANVAVDR LHKFL+CDSC L+EAI KYVDFITSSP+RGLFEGPKCPK LGDLVES FGAILLDTGFNLNRVWKIMLSILDPIKSLS+VQLNPIRE+QEL Q  NWDL
Sbjct: 1246 GCYQRLEFLGDAVLDYLITSYLFSVYPKLKPGQLTDLRSVSVNNKSFANVAVDRSLHKFLICDSCPLSEAIGKYVDFITSSPERGLFEGPKCPKVLGDLVESSFGAILLDTGFNLNRVWKIMLSILDPIKSLSTVQLNPIRELQELCQSCNWDL 1399
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BLAST of g.arboreum_cottongen_reftransV1_0003503 vs. ExPASy TrEMBL
Match: A0A061GR83_THECC (Dicer-like protein, putative isoform 1 OS=Theobroma cacao GN=TCM_037118 PE=4 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 4.372e-87
Identity = 140/154 (90.91%), Postives = 146/154 (94.81%), Query Frame = 1 
Query:    1 GCYQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYVDFITSSPDRGLFEGPKCPKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSVQLNPIREVQELSQCYNWDL 462
            GCYQRLEFLGDAVLDYLITSYLFS+YPKLKPGQLTDLRSVSVNNKSFANVAVDR LHKFL+CDSC L+EAI KYVDFITSSP+RGLFEGPKCPK LGDLVES FGAILLDTGFNLNRVWKIMLSILDPIKSLS+VQLNPIRE+QEL Q  NWDL
Sbjct: 1282 GCYQRLEFLGDAVLDYLITSYLFSVYPKLKPGQLTDLRSVSVNNKSFANVAVDRSLHKFLICDSCPLSEAIGKYVDFITSSPERGLFEGPKCPKVLGDLVESSFGAILLDTGFNLNRVWKIMLSILDPIKSLSTVQLNPIRELQELCQSCNWDL 1435
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BLAST of g.arboreum_cottongen_reftransV1_0003503 vs. ExPASy TrEMBL
Match: M5W9S4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000144mg PE=4 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 5.923e-75
Identity = 122/155 (78.71%), Postives = 138/155 (89.03%), Query Frame = 1 
Query:    1 GCYQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYVDFI-TSSPDRGLFEGPKCPKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSVQLNPIREVQELSQCYNWDL 462
            GCYQRLEFLGDAVLDYLITSYL+S+YPKLKPGQLTDLRSVSVNNK+FANVAVDR  HKFL+CDS  L+EAI+ YVDFI T + +RGL +GPKCPK+LGDLVESC GAILLDTGFNLNRVW+IMLS L PI S SS+QL+PIRE++EL Q + WDL
Sbjct: 1237 GCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSVSVNNKAFANVAVDRSFHKFLICDSGSLSEAIKVYVDFIDTPASERGLLDGPKCPKSLGDLVESCLGAILLDTGFNLNRVWEIMLSFLKPIMSFSSLQLSPIRELRELCQAHTWDL 1391
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BLAST of g.arboreum_cottongen_reftransV1_0003503 vs. ExPASy TrEMBL
Match: F6HCK3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0149g00120 PE=4 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 4.663e-73
Identity = 120/155 (77.42%), Postives = 135/155 (87.10%), Query Frame = 1 
Query:    1 GCYQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYVDFI-TSSPDRGLFEGPKCPKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSVQLNPIREVQELSQCYNWDL 462
            GCYQRLEFLGDAVLDYLITSYL+S+YPKLKPGQ+TDLRS+SVNNKSFANVAV R LH+FL+CD+  L+EAI+KYVDFI T + D+ L EGPKCPKALGDLVESC GAILLD GF+LN  W IMLSILD I S S +QLNPIRE+QEL Q +NWDL
Sbjct:  847 GCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQMTDLRSLSVNNKSFANVAVSRSLHEFLICDASSLSEAIKKYVDFIRTPTLDKDLHEGPKCPKALGDLVESCMGAILLDKGFDLNHAWNIMLSILDRIMSFSDLQLNPIRELQELCQHHNWDL 1001
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BLAST of g.arboreum_cottongen_reftransV1_0003503 vs. ExPASy TrEMBL
Match: A0A067KQY3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03984 PE=4 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 9.617e-69
Identity = 109/153 (71.24%), Postives = 130/153 (84.97%), Query Frame = 1 
Query:    1 GCYQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYVDFI-TSSPDRGLFEGPKCPKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSVQLNPIREVQELSQCYNW 456
            GCYQRLEFLGDAVLDYLITSYLFS+YPKLKPG LTDLRS  VNN++FAN+AV+R  HKFL+ DS +L+EA++ Y +F+ T++ D+ LFEGPKCPK LGDLVESC GAILLDTGFNLN +W++MLS LDPI +  +VQLNP RE+QEL Q  NW
Sbjct:  780 GCYQRLEFLGDAVLDYLITSYLFSVYPKLKPGHLTDLRSAFVNNRAFANIAVNRNFHKFLISDSSNLSEAVKAYAEFVKTAASDKALFEGPKCPKVLGDLVESCLGAILLDTGFNLNHIWELMLSFLDPILNSCNVQLNPFRELQELCQSQNW 932
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BLAST of g.arboreum_cottongen_reftransV1_0003503 vs. ExPASy TrEMBL
Match: B9HAP9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s20310g PE=4 SV=2)

HSP 1 Score: 232.261 bits (591), Expect = 6.095e-67
Identity = 108/155 (69.68%), Postives = 131/155 (84.52%), Query Frame = 1 
Query:    1 GCYQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYVDFI-TSSPDRGLFEGPKCPKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSVQLNPIREVQELSQCYNWDL 462
            GCYQRLEFLGDAVLDYLITSYLFS+YPK+KPG LTDLRSV VNN++FA+VAVDR  H++L+CDS  L+ A +K+VDF+ T   +R L EGPKCPK LGDLVES  GAILLDTGF+LN +WKIMLS L+PI S S++Q+NP+RE++EL Q +NWD 
Sbjct: 1246 GCYQRLEFLGDAVLDYLITSYLFSVYPKMKPGHLTDLRSVLVNNRAFASVAVDRSFHEYLICDSDALSAATKKFVDFVRTPKSERRLLEGPKCPKVLGDLVESSVGAILLDTGFDLNHIWKIMLSFLNPISSFSNLQINPVRELKELCQSHNWDF 1400
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BLAST of g.arboreum_cottongen_reftransV1_0003503 vs. ExPASy Swiss-Prot
Match: DCL4_ARATH (Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 1.491e-64
Identity = 102/154 (66.23%), Postives = 126/154 (81.82%), Query Frame = 1 
Query:    1 GCYQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYVDFITSSP-DRGLFEGPKCPKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSVQLNPIREVQELSQCYNWD 459
            GCYQRLEFLGDAVLDYL+TSY F+++PKLKPGQLTDLRS+SVNN++ ANVAV   L +FL C+S +L+E IE Y +F+ SSP   G  EGP+CPK LGDLVESC GA+ LD GFNLN VW +MLS LDP+K+LS++Q++PI+E+ EL Q Y WD
Sbjct: 1324 GCYQRLEFLGDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQSEGPRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIELCQSYKWD 1477
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BLAST of g.arboreum_cottongen_reftransV1_0003503 vs. ExPASy Swiss-Prot
Match: DCL4_ORYSJ (Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 2.193e-56
Identity = 89/155 (57.42%), Postives = 122/155 (78.71%), Query Frame = 1 
Query:    1 GCYQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYVDFIT-SSPDRGLFEGPKCPKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSVQLNPIREVQELSQCYNWDL 462
            GCYQRLEFLGDAVL+Y+ITSYL+S YP +KPGQ+TDLRS++V N S A  AV++ +HK L+ DS HL  AI K+  ++  S+ ++ L E P CPKALGD+VESC GA+LLD+GFNLN VWK+ML +L P+ + +++  NP+RE++EL QC+ ++L
Sbjct: 1246 GCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELCQCHGFEL 1400
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BLAST of g.arboreum_cottongen_reftransV1_0003503 vs. ExPASy Swiss-Prot
Match: DCL1_ARATH (Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.713e-35
Identity = 68/152 (44.74%), Postives = 97/152 (63.82%), Query Frame = 1 
Query:    4 CYQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYVDFITSSPDRGLFEG-----PKCPKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSVQLNPIREVQELSQ 444
            CYQRLEF+GDAVLD+LIT +LF  Y  L PG+LTDLR+ +VNN++FA VAV  +LH +L   S  L + I ++V  + +   +  F        K PK LGD+VES  GAI LD+G +    WK+   +L P+ +  ++ ++P+RE+QE  Q
Sbjct: 1592 CYQRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERCQ 1743

HSP 2 Score: 51.6026 bits (122), Expect = 7.611e-7
Identity = 23/62 (37.10%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:    4 CYQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCD 189
            CY+R E LGDA L ++++ +LF  YP+   GQLT +R   V+N      A+ + L  ++  D
Sbjct: 1373 CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQAD 1434
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003503 vs. ExPASy Swiss-Prot
Match: DCL1_ORYSJ (Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.170e-34
Identity = 69/152 (45.39%), Postives = 97/152 (63.82%), Query Frame = 1 
Query:    4 CYQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYVDFITSSPDRGLFEG-----PKCPKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSVQLNPIREVQELSQ 444
            CYQRLEF+GDAVLD+LIT +LF  Y  L PG+LTDLR+ +VNN++FA VAV  +LH  L   S  L   I ++V  +     +  F        K PK LGD+VES  GAI LD+G++ + VWK+   +L P+ +  ++ ++P+RE+QE  Q
Sbjct: 1571 CYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPMHPVRELQERCQ 1722

HSP 2 Score: 53.5286 bits (127), Expect = 1.641e-7
Identity = 23/62 (37.10%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:    4 CYQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCD 189
            CY+R E LGDA L ++++ +LF  YP+   GQLT +R   V+N      A+++ L  ++  D
Sbjct: 1351 CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALNKTLQSYIQAD 1412
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003503 vs. ExPASy Swiss-Prot
Match: DCL2_ARATH (Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana GN=At3g03300 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 1.703e-33
Identity = 70/156 (44.87%), Postives = 100/156 (64.10%), Query Frame = 1 
Query:    4 CYQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYVDFITSSPDRGLF---EGPKCPKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSVQLNPIREVQELSQCYNWDL 462
            CYQRLEFLGD+VLDYLIT +L+  YP L PG LTD+RS SVNN+ +A VAV   LHK ++  S HL++ I + V     S  +  F        PK LGD++ES  GAI +D+G+N   V+  +  +L  + +  +V+L+P+RE+ EL Q + ++L
Sbjct: 1183 CYQRLEFLGDSVLDYLITKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELCQKWQFEL 1338
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003503 vs. ExPASy Swiss-Prot
Match: DCL3A_ORYSJ (Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica GN=DCL3A PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.667e-33
Identity = 76/148 (51.35%), Postives = 98/148 (66.22%), Query Frame = 1 
Query:    4 CYQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYVDFIT-SSPDRG--LFEG-PKCPKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSVQLNPIREVQE 435
            CY+RLEFLGDAVLD L+T YLF+ +     G+LTDLRS SVNN++FA VAV    H FL   S  L + I +YV+ +  SS D+   L +G PK PK LGD+VES  GAILLDT  +L+ VW I   +L PI +  +++L P RE+ E
Sbjct: 1275 CYERLEFLGDAVLDILLTRYLFNSHKDTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVELLSDGLPKGPKVLGDIVESIAGAILLDTKLDLDVVWGIFEPLLSPIVTPENLELPPYRELIE 1422
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003503 vs. ExPASy Swiss-Prot
Match: DCL3_ARATH (Endoribonuclease Dicer homolog 3 OS=Arabidopsis thaliana GN=DCL3 PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 3.116e-31
Identity = 67/146 (45.89%), Postives = 93/146 (63.70%), Query Frame = 1 
Query:    7 YQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYVDFITSSPDRGLFEGP--KCPKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSVQLNPIREVQEL 438
            Y+RLEFLGD+VLD+LIT +LF+ Y +  PG++TDLRS  VNN++FA VAV   LH  L   +  L   I  Y+      PD      P  + PKALGD+VES  GA+L+DT  +L++VW++   +L P+ +   +QL P RE+ EL
Sbjct: 1230 YERLEFLGDSVLDFLITRHLFNTYEQTGPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYL-MSFQKPDETGRSIPSIQGPKALGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRELNEL 1374
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003503 vs. ExPASy Swiss-Prot
Match: DCL2B_ORYSJ (Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica GN=DCL2B PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 5.657e-31
Identity = 61/145 (42.07%), Postives = 89/145 (61.38%), Query Frame = 1 
Query:    4 CYQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYVDFITSSPDRGLFEGPKCPKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSVQLNPIREVQEL 438
            CYQRLEFLGDA+LD+L T Y +S YP   P  LTDLRS SVNN  +A+ AV   L+K ++  S  L+  +  Y+    + P  G   G   PK LGD++ES  GAI LD+  +   VW+ M  +L+P+ +  +++ +P++ +QE 
Sbjct: 1166 CYQRLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEF 1310
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003503 vs. ExPASy Swiss-Prot
Match: DCL2A_ORYSJ (Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica GN=DCL2A PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.475e-30
Identity = 62/148 (41.89%), Postives = 90/148 (60.81%), Query Frame = 1 
Query:    4 CYQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYVDFITSS---PDRGLFEGPKCPKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSVQLNPIREVQEL 438
            CYQRLEFLGDA+LD+L T Y +S YP   P  LTDLRS SVNN  +A+ AV   L+K ++  S  L+  +  Y++    S   P  G   G   PK LGD++ES  GAI LD+  +   VW+ M  +L+P+ +  +++ +P++ +QE 
Sbjct: 1195 CYQRLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEF 1342
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BLAST of g.arboreum_cottongen_reftransV1_0003503 vs. ExPASy Swiss-Prot
Match: DCL3B_ORYSJ (Endoribonuclease Dicer homolog 3b OS=Oryza sativa subsp. japonica GN=DCL3B PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.034e-28
Identity = 62/149 (41.61%), Postives = 90/149 (60.40%), Query Frame = 1 
Query:    4 CYQRLEFLGDAVLDYLITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYV--DFITSSPDRGLFEGPKC--PKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSVQLNPIREVQEL 438
            CYQRLEFLGD+VLD L+T +L++ +  + PG+LTDLRS  V+N++FA   V   +H  L   S  L E I +YV  +      +    +   C  PK LGD++ES  GA+ +DT FN++ VW+I   +L P+ +   + L P RE+ EL
Sbjct: 1275 CYQRLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFIDTDFNVDMVWEIFEPLLSPLITPDKLALPPYRELLEL 1423
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0003503 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0P3D1_GOSAR4.247e-99100.00Dicer-like protein 4 OS=Gossypium arboreum GN=F383... [more]
A0A0D2Q9H6_GOSRA1.345e-9799.35Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2TJW7_GOSRA1.493e-9799.35Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2UGS1_GOSRA2.635e-9799.35Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061GID4_THECC3.260e-8790.91Dicer-like protein isoform 2 (Fragment) OS=Theobro... [more]
A0A061GR83_THECC4.372e-8790.91Dicer-like protein, putative isoform 1 OS=Theobrom... [more]
M5W9S4_PRUPE5.923e-7578.71Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
F6HCK3_VITVI4.663e-7377.42Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A067KQY3_JATCU9.617e-6971.24Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
B9HAP9_POPTR6.095e-6769.68Uncharacterized protein OS=Populus trichocarpa GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0003503 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
DCL4_ARATH1.491e-6466.23Dicer-like protein 4 OS=Arabidopsis thaliana GN=DC... [more]
DCL4_ORYSJ2.193e-5657.42Endoribonuclease Dicer homolog 4 OS=Oryza sativa s... [more]
DCL1_ARATH1.713e-3544.74Endoribonuclease Dicer homolog 1 OS=Arabidopsis th... [more]
DCL1_ORYSJ1.170e-3445.39Endoribonuclease Dicer homolog 1 OS=Oryza sativa s... [more]
DCL2_ARATH1.703e-3344.87Endoribonuclease Dicer homolog 2 OS=Arabidopsis th... [more]
DCL3A_ORYSJ2.667e-3351.35Endoribonuclease Dicer homolog 3a OS=Oryza sativa ... [more]
DCL3_ARATH3.116e-3145.89Endoribonuclease Dicer homolog 3 OS=Arabidopsis th... [more]
DCL2B_ORYSJ5.657e-3142.07Endoribonuclease Dicer homolog 2b OS=Oryza sativa ... [more]
DCL2A_ORYSJ4.475e-3041.89Endoribonuclease Dicer homolog 2a OS=Oryza sativa ... [more]
DCL3B_ORYSJ3.034e-2841.61Endoribonuclease Dicer homolog 3b OS=Oryza sativa ... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000999Ribonuclease III domainSMARTSM00535riboneu5coord: 1..129
e-value: 1.3E-15
score: 67.9
IPR000999Ribonuclease III domainPFAMPF00636Ribonuclease_3coord: 2..107
e-value: 1.9E-21
score: 76.5
IPR000999Ribonuclease III domainGENE3D1.10.1520.10coord: 1..124
e-value: 1.1E-31
score: 108.8
IPR000999Ribonuclease III domainPROSITEPS50142RNASE_3_2coord: 1..107
score: 27.006
IPR000999Ribonuclease III domainSUPERFAMILY69065RNase III domain-likecoord: 1..124
NoneNo IPR availablePANTHERPTHR14950HELICASE-RELATEDcoord: 1..149
NoneNo IPR availablePANTHERPTHR14950:SF15DICER-LIKE PROTEIN 4coord: 1..149

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0003503 ID=g.arboreum_cottongen_reftransV1_0003503; Name=g.arboreum_cottongen_reftransV1_0003503; organism=Gossypium arboreum; type=contig; length=463bp
GGCTGCTACCAGAGATTGGAGTTTCTTGGAGATGCTGTCTTGGATTATTT
AATTACATCATATCTGTTTTCACTGTATCCAAAGTTGAAACCTGGTCAGT
TGACTGATTTGAGATCAGTGTCAGTGAACAACAAGTCCTTTGCCAATGTT
GCAGTGGACAGACGCTTACACAAATTTCTTATGTGTGACTCTTGTCACCT
CAACGAGGCCATAGAAAAATATGTTGACTTCATCACATCATCACCAGACA
GGGGATTATTTGAAGGGCCAAAATGTCCGAAGGCTCTTGGTGACTTGGTA
GAGTCTTGTTTTGGTGCTATTCTCCTTGATACAGGGTTCAACTTGAACCG
TGTTTGGAAGATAATGTTATCCATTCTGGATCCAATCAAGAGCCTTTCAA
GTGTGCAGCTCAATCCTATCAGGGAAGTACAGGAACTTTCCCAGTGTTAT
AACTGGGATTTGC
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR000999RNase_III_dom
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0004525ribonuclease III activity