g.arboreum_cottongen_reftransV1_0007741, g.arboreum_cottongen_reftransV1_0007741 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0007741
Unique Nameg.arboreum_cottongen_reftransV1_0007741
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length962
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr5chromosomeg.arboreum_cottongen_reftransV1_0007741:1..962 .
Chr5:15048194..15049155 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: A0A0D2SCX7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G080600 PE=4 SV=1)

HSP 1 Score: 482.641 bits (1241), Expect = 7.522e-167
Identity = 282/291 (96.91%), Postives = 288/291 (98.97%), Query Frame = 3
Query:    3 CVDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSNSLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRPC 875
            C DSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRISDSQDLISILLQLLKTNNN SLNDAVTSILTTISITRS+RSRLIENGIVEILSNSLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLK+SK GTEDA+TVLWSTCCL+KEE+VKEAVVKGNGVTKILVIMQREGEGNVKMMCR+LVKALRAVCKDWCLGSYETKTTHIRPC
Sbjct:  116 CDDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRISDSQDLISILLQLLKTNNNGSLNDAVTSILTTISITRSIRSRLIENGIVEILSNSLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKVSKRGTEDAVTVLWSTCCLSKEEKVKEAVVKGNGVTKILVIMQREGEGNVKMMCRDLVKALRAVCKDWCLGSYETKTTHIRPC 406          
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: A0A0D2RHH1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G080700 PE=4 SV=1)

HSP 1 Score: 478.404 bits (1230), Expect = 3.419e-165
Identity = 279/291 (95.88%), Postives = 286/291 (98.28%), Query Frame = 3
Query:    3 CVDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSNSLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRPC 875
            C DSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKC EIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVL+LQHGSLNSKIKSVRVLDSLALDSESKRRISDSQDLISILL+LLKTNNN SLNDAVTSILTTISITRS+RSRLIENGIVEILSNSLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLK+SK GTEDA+TVLWSTCCLNKEE+VKEAVVKGNGVTKILVIMQREGEGNVKMMCR+LVKALRAVCKDWCLGSYETKTT IRPC
Sbjct:  116 CDDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCAEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLMLQHGSLNSKIKSVRVLDSLALDSESKRRISDSQDLISILLELLKTNNNGSLNDAVTSILTTISITRSIRSRLIENGIVEILSNSLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKVSKRGTEDAVTVLWSTCCLNKEEKVKEAVVKGNGVTKILVIMQREGEGNVKMMCRDLVKALRAVCKDWCLGSYETKTTQIRPC 406          
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: A0A061FJ60_THECC (Plant U-box 29, putative OS=Theobroma cacao GN=TCM_035500 PE=4 SV=1)

HSP 1 Score: 402.134 bits (1032), Expect = 3.907e-135
Identity = 226/290 (77.93%), Postives = 260/290 (89.66%), Query Frame = 3
Query:    3 CVDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSNSLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872
            CVDSL+KVAEFVSC EENR+F+ RF    E+IA VL+RKCVEIKALE AVRILDLILSENGV E LNKLIL+SNQE+ FLS+IVLILQ+GSLNSK +S+RVLDS+ALDSESKRRI+DSQ+LIS+L+ LLK+N+NE LNDAV S LT +SITRS++S+LI+NG VEILSNSLTEKSLK+LA L  C EGRSAISS+PKCAA IVE+LLK+SKT TEDA+ VLWS CCL K+E+VKE VVKGNGVTKILV+MQREGEGNV+MMCR+LVKALRA CKDW LGSYET+TTHIRP
Sbjct:  116 CVDSLTKVAEFVSCSEENRRFIVRFGDSSEIIASVLRRKCVEIKALEMAVRILDLILSENGVKERLNKLILESNQENNFLSSIVLILQNGSLNSKTESIRVLDSIALDSESKRRIADSQNLISVLVHLLKSNDNEPLNDAVVSFLTNVSITRSIKSQLIQNGAVEILSNSLTEKSLKMLAILCACPEGRSAISSDPKCAAGIVERLLKVSKTATEDAVLVLWSVCCLRKDEKVKEEVVKGNGVTKILVVMQREGEGNVRMMCRDLVKALRAGCKDWTLGSYETRTTHIRP 405          
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: V4T886_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001380mg PE=4 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.329e-73
Identity = 151/300 (50.33%), Postives = 217/300 (72.33%), Query Frame = 3
Query:    3 CVDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKC-VEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSNSLT---------EKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872
            CVD L KVA+F + CE NR+F+A + GFVE + GVL RK   EI  LE+AVR+L+LI++ENGV E LN+LILK+      L   + IL+ G+L+SKI S+++LDS++LD+ESKRR+ ++++L+S L   LK   +++LNDA+ SIL T+S+ RSV+++L+E G+V+IL+  L+         EKS+K+L+ ++TCSEGR A+S E  CA  +VE+++K+ KT  EDA+ V+WS CC+ K+ RVKEAVV  NG+TK+L++MQ E EG V+ MC +LVK L    K   LG+Y+TKT HI P
Sbjct:  104 CVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILKT---YNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVL---GKASGLGNYQTKTAHIMP 397          
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: A0A067H7L3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015939mg PE=4 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 6.538e-73
Identity = 150/300 (50.00%), Postives = 216/300 (72.00%), Query Frame = 3
Query:    3 CVDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKC-VEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSNSLT---------EKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872
            CVD L KVA+F + CE NR+F+A + GFVE + GVL RK   EI  LE+AVR+L+LI++ENGV E LN+LIL +      L   + IL+ G+L+SKI S+++LDS++LD+ESKRR+ ++++L+S L   LK   +++LNDA+ SIL T+S+ RSV+++L+E G+V+IL+  L+         EKS+K+L+ ++TCSEGR A+S E  CA  +VE+++K+ KT  EDA+ V+WS CC+ K+ RVKEAVV  NG+TK+L++MQ E EG V+ MC +LVK L    K   LG+Y+TKT HI P
Sbjct:  104 CVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNT---YNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVL---GKASGLGNYQTKTAHIMP 397          
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: B9GTL1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s07130g PE=4 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.898e-71
Identity = 153/306 (50.00%), Postives = 219/306 (71.57%), Query Frame = 3
Query:    3 CVDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNN-ESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSN---------SLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQRE-GEGNVKMMCRNLVKALRAVCKDWCLG----SYETKTTHIRPC 875
            C+DS   + EFVSC E +R+F+  FDGF+E I GVL   CV+I+ LE+ +R+L  +L ENGV E L+KL+  SN  S  L + + +L++GSL   I  V VL+S+ ++++SK+ ++ +QD++ +LLQLLKT+N+ + LN+ V S L ++SIT S+++RL++ G+VE+LS+         S+ EKSLK L+ + T ++GRSAIS +P CA AIVE+L+K+SKT TEDA+ VLWS CCL ++E+V E VV+ NGVTK+L+IMQ E GEGNV+ MC +L+K LR  CK+        SYETKTTHI PC
Sbjct:  111 CLDS---IVEFVSCGEVSRRFLVSFDGFLEAIVGVLNTNCVQIRVLESVIRVLSSLLLENGVNEKLHKLVFTSN--SNCLPSFISVLRNGSLEYNIACVTVLESITINNQSKQLVAGTQDVLPVLLQLLKTDNDHQDLNEVVLSFLISVSITLSIKTRLVQLGLVEVLSSMLLSQNAAVSVVEKSLKALSMICTRADGRSAISVDPTCAGAIVERLMKVSKTATEDAVVVLWSMCCLFRDEKVLERVVRSNGVTKVLLIMQSEVGEGNVRRMCGDLIKVLRFGCKNGGGLGGAVSYETKTTHIMPC 411          
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: A0A067L3L7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25208 PE=4 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.023e-71
Identity = 147/303 (48.51%), Postives = 223/303 (73.60%), Query Frame = 3
Query:    6 VDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNN-ESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSN---------SLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLG---SYETKTTHIRPC 875
            V+SL K+ EF++  EEN +F+ RFDGF++ I  VL R+ VEI+ LE  +R+LDLIL +NG+ E +++L L   Q    LS+ + ++++G+ NSKI+S+RVL S++L++ESKR I+++Q+LI +LL LLK+  +  +L+D V S+L +++ITRS+++++++ G+V++LSN         SL EK LKLL+ +STC+EGR+AIS + KCA  IVE+L+K++KT TEDA+ VLWS CC  ++ERV+E V+  NG+TK+L++MQ EG+G V+ MC  L+K +R   K+   G   SYETKTTHI PC
Sbjct:  112 VESLVKIVEFLNYSEENSRFLVRFDGFIDAIVIVLSREGVEIQVLELIIRVLDLILVQNGIKEKVHRLFL---QNQNCLSSFLSVIKNGNSNSKIQSIRVLGSISLNNESKRFIAETQNLIPVLLHLLKSETDLPALHDTVLSLLISLTITRSIKTQIVQLGLVQLLSNTLSNKNAAISLIEKCLKLLSIISTCTEGRAAISEDAKCAGCIVERLMKVTKTATEDAVLVLWSLCCTFRDERVQEKVMGSNGLTKLLLVMQSEGDGTVRRMCGELIKVMRNRYKNGGNGMVVSYETKTTHIMPC 411          
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: M5VJ24_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006448mg PE=4 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 1.485e-68
Identity = 147/302 (48.68%), Postives = 216/302 (71.52%), Query Frame = 3
Query:    6 VDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSNSL---------TEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQR-EGEGN-VKMMCRNLVKALRAVCKDWCLG-SYETKTTHIRPC 875
            + SLSK+ +F    +ENRKF+A F+GFV  I GVL R+ VEI+ LE+ +R+LDLIL +NGV E L +L+ KSN+    LS+I L+LQ GSL+SKI+S RVLDS+AL++ESKR I++ + L+S+L  LL +  +++L+  V S L ++S+TR+V++ L+  G+V +++ +L          EK LKLL+T++TC+EGRSAIS E KCAAA+ E+L+K+S++ TED L VLWS CC+  ++R +E+V++ +G  K+L++MQ   GEGN V+ MC +L+K L        LG SY+TKT HI PC
Sbjct:  115 LHSLSKMVDFAKAGDENRKFLANFNGFVPAIVGVLNREGVEIEVLESVIRVLDLILPQNGVKEQLRQLLTKSNRNC--LSSIRLLLQKGSLSSKIESARVLDSIALEAESKRLIAEKEGLLSLLNDLLSSETDQNLHGVVFSCLASVSVTRTVKAELVRFGLVRVITTTLLNPDTTIWLAEKCLKLLSTIATCAEGRSAISEEEKCAAAVAERLMKVSRSATEDGLAVLWSVCCMLGDKRARESVMRSHGAAKVLLVMQSGYGEGNFVRRMCGDLIKVLSV---GLGLGLSYDTKTLHIMPC 411          
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: B9H7Q2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s21210g PE=4 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 9.168e-68
Identity = 153/310 (49.35%), Postives = 211/310 (68.06%), Query Frame = 3
Query:    3 CVDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXX--XXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSN---------SLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQRE-GEGN-VKMMCRNLVKALRAVCKDWCLG------SYETKTTHIRPC 875
            C+DS   + EF S  E NR  +A FDGF+E I GVL    ++I+ LE+ VRIL LIL ENGV E L+KLILKS+  S  L + + IL++GSL SK+    VL+S+  ++ESKR I+      L  I+  +   N+N+ L+D V S L  +S+ RS++S+L++ GIVE+LSN         S+ EKSLK+L+ + TC++G+SA+S + KCA AIVE+L+K+SKT TEDA+ VLWS CCL ++E+V E V + NGVTK+L++MQ E GEGN V+ MC +L+K LR  CK+  +G      SYETKTTHI PC
Sbjct:  107 CLDS---IVEFASRGEVNRSLLASFDGFLETIVGVLSINGMQIRVLESVVRILSLILLENGVNEKLHKLILKSSSNSSCLPSFISILRNGSLESKMACFTVLESVTTNNESKRFIAGVENNFLPVIIHLIKIDNDNQELHDVVLSFLIAVSVARSIKSQLVQLGIVEVLSNMMSSKNAAISVVEKSLKILSMVCTCADGQSALSGDQKCAGAIVERLMKVSKTATEDAVVVLWSMCCLFRDEKVVEKVARSNGVTKVLLVMQSEVGEGNYVRRMCGDLIKVLRFGCKN--VGGFSGAVSYETKTTHIMPC 411          
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: A5AEH0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025009 PE=4 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 1.819e-63
Identity = 143/297 (48.15%), Postives = 203/297 (68.35%), Query Frame = 3
Query:   12 SLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSNSL---------TEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKL-LKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872
            +L K+ ++ S  +ENR+FVA  DGFV V+AGVL      I+ LE  VRILDL++ E GV E +  LILKSN++   LSAI+LIL+ GS +SKI S R+L+++A+D ESKR IS+ + L+S+LLQLL +  + S  D+V S L  I++TR  +++L+ +G+V+ L+ +L         TEKS+KLL T+S C +G  AI  +P C AA+V+++ +KLS +  EDA+TVLWS C LN++ + +EAV K  G+TKIL++MQ     NV+ MC +LVK  R   K  CL SY+TKTTHI P
Sbjct:  106 ALPKILDYASSSDENRRFVASLDGFVPVVAGVLGNAGAXIEILELVVRILDLVMVEKGVKEQIQGLILKSNRD--HLSAILLILEKGSSDSKIASARILEAIAIDPESKRSISEREGLLSVLLQLLSSQTDSSSLDSVLSCLIAITVTRQTKTQLVRSGLVQTLAKTLSTSNYPISTTEKSIKLLLTISNCRDGHQAICEDPICVAAVVQRMSMKLSSSAVEDAVTVLWSVCYLNRDSKAQEAVAKSTGLTKILLLMQTNCSANVRRMCCDLVKIFRVNSKS-CLASYDTKTTHITP 399          
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy Swiss-Prot
Match: PUB29_ARATH (U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.638e-35
Identity = 110/304 (36.18%), Postives = 180/304 (59.21%), Query Frame = 3
Query:    6 VDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXX--XXXXXXXXXXXKTNNNESLNDAXXXXXXXXXX---------XXXXXXXXXENGIVEILSN-SLTEKSLKLLATLSTCSEGRSAISSEP--KCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEER-VKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872
            +++L K+  FV   + NR+F+++   FV ++  +++ K  +I+ +  A+RILD I  +    E L+ L+L +N     L+AI+L +Q G+L SKI+SVRVLD ++ D++SK  I++        +    +  +++ SL +A  S L TIS               +++ +  + E L+N ++TEKSLKLL TLS+  EGR  I  +   +C   +V+KLLK+S T TE A+T+LW  C + +E++ V+E V + NGVTK+LV++Q      V+ M ++L+K L+       L +YETKTTHI P
Sbjct:  117 LENLMKIVRFVKDSDSNREFLSKKMEFVPMLVDIIRTKKTKIELVIMAIRILDSIKVDR---ERLSNLML-ANDGGDCLTAILLAIQRGNLESKIESVRVLDWISFDAKSKLMIAERDGVLTEMMKSISITESSDPSLIEASLSFLITISKSKRVRSKLIAAKAITKIKDILLTETLTNVAVTEKSLKLLETLSSKREGRLEICGDDNGRCVEGVVKKLLKVSTTATEHAVTILWCLCYVFREDKTVEETVERSNGVTKLLVVIQSNCSAMVRQMAKDLIKVLK--FNSSALAAYETKTTHIMP 414          
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy Swiss-Prot
Match: PUB28_ARATH (U-box domain-containing protein 28 OS=Arabidopsis thaliana GN=PUB28 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 7.656e-29
Identity = 107/301 (35.55%), Postives = 177/301 (58.80%), Query Frame = 3
Query:    9 DSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVL--KRKCVEIKALET--AVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSN---------SLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872
            D+ SK+  F    +ENR+F+A  D FV ++  ++   R   + + L    AV+IL +I  +      L+ LIL +  +   L++  L+++ G+   KI    VL+ +A+D+ESK  I+  + L++ +++L+ ++++ SL +A  S+L  I+ ++ V+  LI   +V  L++         S+TEK LKLL  +S+C EGRS I  +  C   +V KL+K+S   TE A+TVLWS C L KE++ ++AV++ NGVTKIL+++Q      V+ M  +L+K  +   +  CL  YETKTTHI P
Sbjct:  112 DARSKILRFARESDENREFLAGKDDFVAMLVDLISDSRNFSDSQLLLVGEAVKILSMIRRKIFDRRRLSNLILTNGGDC--LTSFFLLIKRGNPKLKIDCSAVLEFIAVDAESKLIIAKGEGLVTEIIKLISSDSDSSLIEANLSLLIAIASSKRVKLALIREKLVTKLTSLLTDPTTSVSVTEKCLKLLEAISSCKEGRSEI-CDGVCVETVVNKLMKVSTAATEHAVTVLWSVCYLFKEKKAQDAVIRINGVTKILLLLQSNCSLTVRHMLTDLLKVFKVNSRS-CLSVYETKTTHIMP 408          
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy Swiss-Prot
Match: PUB27_ARATH (U-box domain-containing protein 27 OS=Arabidopsis thaliana GN=PUB27 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.582e-21
Identity = 54/119 (45.38%), Postives = 75/119 (63.03%), Query Frame = 3
Query:  519 EKSLKLLATLSTCSEGRSAI-SSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872
            EK LKLL  L++  EGRS I   + +C   +V+KL+K+S   TE A+TVLWS   L KE++  EAV   NGVTKIL+++Q      V+ M  +L+K  +   +  CL +Y+TKTTHI P
Sbjct:  302 EKCLKLLEILASTKEGRSEICGGDGECLKTVVKKLMKVSTAATEHAVTVLWSVSYLFKEDKALEAVTSVNGVTKILLLLQSNCSPAVRRMLTDLLKVFKVNSRS-CLSAYDTKTTHIMP 419          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2SCX7_GOSRA7.522e-16796.91Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2RHH1_GOSRA3.419e-16595.88Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061FJ60_THECC3.907e-13577.93Plant U-box 29, putative OS=Theobroma cacao GN=TCM... [more]
V4T886_9ROSI1.329e-7350.33Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A067H7L3_CITSI6.538e-7350.00Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
B9GTL1_POPTR1.898e-7150.00Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A067L3L7_JATCU2.023e-7148.51Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
M5VJ24_PRUPE1.485e-6848.68Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
B9H7Q2_POPTR9.168e-6849.35Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A5AEH0_VITVI1.819e-6348.15Putative uncharacterized protein OS=Vitis vinifera... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PUB29_ARATH1.638e-3536.18U-box domain-containing protein 29 OS=Arabidopsis ... [more]
PUB28_ARATH7.656e-2935.55U-box domain-containing protein 28 OS=Arabidopsis ... [more]
PUB27_ARATH8.582e-2145.38U-box domain-containing protein 27 OS=Arabidopsis ... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 9..269
e-value: 3.9E-16
score: 57.9
NoneNo IPR availablePANTHERPTHR22849:SF12SUBFAMILY NOT NAMEDcoord: 1..287
NoneNo IPR availablePANTHERPTHR22849WDSAM1 PROTEINcoord: 1..287
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 71..267

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0007741 ID=g.arboreum_cottongen_reftransV1_0007741; Name=g.arboreum_cottongen_reftransV1_0007741; organism=Gossypium arboreum; type=contig; length=962bp
GCTGCGTCGATTCTTTGTCTAAGGTTGCCGAGTTCGTAAGCTGTTGCGAA
GAGAACCGGAAATTTGTAGCTAGATTCGACGGTTTCGTTGAGGTAATCGC
CGGAGTTTTGAAAAGGAAATGTGTGGAAATCAAAGCTTTGGAAACGGCGG
TTAGGATTTTGGATTTGATTTTGAGCGAAAATGGAGTCACAGAAGGGTTA
AACAAATTAATCCTTAAAAGCAATCAGGAAAGTAAATTTTTATCTGCAAT
CGTTTTAATTCTTCAACACGGAAGCCTGAACTCGAAGATCAAGTCAGTCC
GAGTTCTGGACTCACTAGCACTTGACTCGGAATCCAAACGCAGGATCTCC
GACTCACAAGACCTTATATCCATCCTTCTCCAGCTCCTGAAAACAAACAA
CAACGAATCCTTAAACGACGCCGTTACTTCCATTTTAACCACCATTTCAA
TAACGCGCTCCGTCAGATCCCGCCTCATCGAAAACGGCATCGTTGAAATC
CTATCAAACTCGCTCACAGAAAAGTCGTTGAAGTTGTTAGCAACGCTTAG
CACTTGCAGCGAAGGGAGGTCAGCAATCAGTTCCGAGCCAAAATGCGCGG
CGGCGATCGTAGAAAAGCTGTTGAAGTTGTCTAAAACGGGGACGGAGGAC
GCCCTAACGGTGTTGTGGAGCACGTGTTGCTTGAACAAAGAGGAGAGAGT
GAAAGAAGCGGTGGTAAAAGGGAATGGGGTGACGAAGATATTAGTAATAA
TGCAAAGAGAAGGGGAAGGGAACGTGAAGATGATGTGCAGGAATTTGGTT
AAGGCTCTAAGAGCTGTATGTAAAGATTGGTGTTTAGGCAGTTATGAAAC
CAAGACTACACATATTAGACCTTGTTGAGGAGCATTCTTTGTTTTTGGAC
ATAAATTTACGCACAAGATTCATGTAATTACCACTTAGTTCAAAGGAAAC
ACGATTCTATGT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding