g.arboreum_cottongen_reftransV1_0003584, g.arboreum_cottongen_reftransV1_0003584 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0003584
Unique Name	g.arboreum_cottongen_reftransV1_0003584
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	878

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr9	chromosome	g.arboreum_cottongen_reftransV1_0003584:2..878 . Chr9:64413441..64415191 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A0B0NWM3_GOSAR (Ubiquitin-conjugating enzyme E2 34-like protein OS=Gossypium arboreum GN=F383_04625 PE=4 SV=1)

HSP 1 Score: 376.711 bits (966), Expect = 2.838e-128
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKVIPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKVIPRRKQPFPTWMMFLLVSVFGIVMALPLLQL
Sbjct:   49 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKVIPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 230

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A0D2UPH2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G054900 PE=4 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 2.782e-116
Identity = 169/173 (97.69%), Postives = 170/173 (98.27%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKVIPRRKQPFPTWMMFLLVSVFGI 520
            FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVD+Y KQQQLISEHSSPESPQGENSKPKTEKLV SSGEDVKKVIPRRKQPFPTWMM LLVSVFGI
Sbjct:   49 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDRYKKQQQLISEHSSPESPQGENSKPKTEKLVDSSGEDVKKVIPRRKQPFPTWMMLLLVSVFGI 221

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A0D2SUM5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G173000 PE=4 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 2.466e-113
Identity = 165/188 (87.77%), Postives = 172/188 (91.49%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKVIPRR------KQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTT  EK RLAKTSL+FNCKNPTFRKLFPEYVDK+NKQQQL+SEH SPESP+GENSKP+TEK+V SSGEDVKKV   R      KQ FPTWMM LLVS+FGIVMALPLLQL
Sbjct:   49 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTVTEKLRLAKTSLAFNCKNPTFRKLFPEYVDKHNKQQQLVSEHLSPESPEGENSKPETEKVVNSSGEDVKKVDTLRNTRRIQKQSFPTWMMLLLVSIFGIVMALPLLQL 236

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A0B0NSN3_GOSAR (Ubiquitin-conjugating enzyme E2 34-like protein OS=Gossypium arboreum GN=F383_20734 PE=4 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 7.653e-113
Identity = 164/188 (87.23%), Postives = 172/188 (91.49%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKVIPRR------KQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTT +EK RLAK SL+FNCKNPTFRKLFPEYVDK+NKQQQL+SEH SPESPQGENSKP+TEK+V SSG+DVKKV   R      KQ FPTWMM LLVS+FGIVMALPLLQL
Sbjct:   49 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTVSEKLRLAKASLAFNCKNPTFRKLFPEYVDKHNKQQQLVSEHLSPESPQGENSKPETEKVVNSSGKDVKKVDTLRNTRRNQKQSFPTWMMLLLVSIFGIVMALPLLQL 236

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A061GJX4_THECC (Ubiquitin-conjugating enzyme 34 isoform 2 OS=Theobroma cacao GN=TCM_029255 PE=4 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 3.060e-108
Identity = 162/189 (85.71%), Postives = 168/189 (88.89%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNK-QQQLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKVIP------RRKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAK SL+FNCKNPTFRKLFPEYVDKYNK QQQL+SEH SPES + EN KP+ EK V SS ED K+V P       RKQ FPTWMM LLVS+FGIVMALPLLQL
Sbjct:   51 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKASLAFNCKNPTFRKLFPEYVDKYNKQQQQLVSEHLSPESTKEENLKPEAEKRVKSSVEDGKRVDPLRDTRRNRKQSFPTWMMLLLVSIFGIVMALPLLQL 239

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A061GDB5_THECC (Ubiquitin-conjugating enzyme 34 isoform 1 OS=Theobroma cacao GN=TCM_029255 PE=4 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 3.188e-108
Identity = 162/189 (85.71%), Postives = 168/189 (88.89%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNK-QQQLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKVIP------RRKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAK SL+FNCKNPTFRKLFPEYVDKYNK QQQL+SEH SPES + EN KP+ EK V SS ED K+V P       RKQ FPTWMM LLVS+FGIVMALPLLQL
Sbjct:   49 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKASLAFNCKNPTFRKLFPEYVDKYNKQQQQLVSEHLSPESTKEENLKPEAEKRVKSSVEDGKRVDPLRDTRRNRKQSFPTWMMLLLVSIFGIVMALPLLQL 237

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A067L948_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24623 PE=4 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.033e-101
Identity = 153/191 (80.10%), Postives = 167/191 (87.43%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKVI----PR--RKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGGYYYGKIKFPPEYPYKPPGITMITP+GRF+TQKKICLSMSDFHPESWNPMWS SSILTGLLSFMMDNSPTTGSVN+T AEKQRLAK SL+FNCKNPTFRKLFPEYV+KYN+QQ   Q+I+E +S E+ Q E S+PK EKL   SGEDVK+V     PR  RKQ FPTW+M LLVS+FGIVMALPLLQL
Sbjct:   49 FAGGYYYGKIKFPPEYPYKPPGITMITPSGRFLTQKKICLSMSDFHPESWNPMWSASSILTGLLSFMMDNSPTTGSVNSTVAEKQRLAKASLAFNCKNPTFRKLFPEYVEKYNQQQQSEQIITEQASTEASQEEKSRPKLEKLDNFSGEDVKRVDTLKGPRGNRKQTFPTWVMLLLVSIFGIVMALPLLQL 239

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A067EIR1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026499mg PE=4 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 2.939e-99
Identity = 151/191 (79.06%), Postives = 163/191 (85.34%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKV-IPR-----RKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGGYYYGKIKFPPEYPYKPPGI MITPNGRFMTQKK+CLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNTT  EKQRLAK SL+FNCKNP FRKLFPEYV+KYN+QQ   Q +SE  SPESP  ENS+PK EK+   SGED+K +  P+     RKQ FPTWM+ LLVS+FGIVMALPLLQL
Sbjct:   49 FAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSPESPNEENSRPKVEKV--GSGEDMKTIDTPKEARKNRKQSFPTWMLLLLVSIFGIVMALPLLQL 237

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A067ES86_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026499mg PE=4 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 7.756e-99
Identity = 151/191 (79.06%), Postives = 163/191 (85.34%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKV-IPR-----RKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGGYYYGKIKFPPEYPYKPPGI MITPNGRFMTQKK+CLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNTT  EKQRLAK SL+FNCKNP FRKLFPEYV+KYN+QQ   Q +SE  SPESP  ENS+PK EK+   SGED+K +  P+     RKQ FPTWM+ LLVS+FGIVMALPLLQL
Sbjct:   40 FAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSPESPNEENSRPKVEKV--GSGEDMKTIDTPKEARKNRKQSFPTWMLLLLVSIFGIVMALPLLQL 228

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: V4RYE9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026383mg PE=4 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 3.107e-98
Identity = 150/191 (78.53%), Postives = 162/191 (84.82%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKV-IPR-----RKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGGYYYGKIKFPPEYPYKPPGI MITPNGRFMTQKK+CLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNTT  EKQRLAK SL+FNCKNP FRKLFPEYV+KYN+QQ   Q +SE  SPES   ENS+PK EK+   SGED+K +  P+     RKQ FPTWM+ LLVS+FGIVMALPLLQL
Sbjct:   49 FAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSPESRNEENSRPKVEKV--GSGEDMKTIDTPKEARKNRKQSFPTWMLLLLVSIFGIVMALPLLQL 237

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC34_ARATH (Ubiquitin-conjugating enzyme E2 34 OS=Arabidopsis thaliana GN=UBC34 PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 2.645e-92
Identity = 137/189 (72.49%), Postives = 156/189 (82.54%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPESPQGENSKPKTEKLV----GSSGEDVKKVIPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGG+YYGKIKFPPEYPYKPPGITM TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNTT  EKQRLAK+SL+FNCK P FRKLFPEYV+KYN+QQ   Q  ++ ++PESPQ  ++K ++EK +    G S   +K+     KQ  P W++ LLVSVFG+VMALPLLQL
Sbjct:   49 FAGGFYYGKIKFPPEYPYKPPGITMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTVIEKQRLAKSSLAFNCKTPAFRKLFPEYVEKYNQQQLAEQATTQLTTPESPQKSDTKVESEKTIDPTKGDSEGGLKERKKNNKQGLPAWIILLLVSVFGVVMALPLLQL 237

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC33_ARATH (Probable ubiquitin-conjugating enzyme E2 33 OS=Arabidopsis thaliana GN=UBC33 PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 4.000e-89
Identity = 132/195 (67.69%), Postives = 159/195 (81.54%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSSPES--------PQGENSKPKTEKLVGSSGEDVKKVIPR-----RKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGG+YYGKIKFPPEYPYKPPGITM TPNGRF+TQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNT+ AEKQRLAK+SL+FNCK+ TFRKLFPEYV+KY++QQ    E ++ ++        PQ +N+K ++EK VG   E +++V  +     +K+  P W++ LLVS+ G+VMALPLLQL
Sbjct:   49 FAGGFYYGKIKFPPEYPYKPPGITMTTPNGRFVTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTSVAEKQRLAKSSLAFNCKSVTFRKLFPEYVEKYSQQQVAEEEAATQQTTTSENQDFPQKDNAKVESEKSVGLKKESIQEVGLKERRRNKKEALPGWIVLLLVSIVGVVMALPLLQL 243

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UB2J2_HUMAN (Ubiquitin-conjugating enzyme E2 J2 OS=Homo sapiens GN=UBE2J2 PE=1 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 1.000e-42
Identity = 68/124 (54.84%), Postives = 94/124 (75.81%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSS 373
            + GGYY+GK+ FP E+P+KPP I MITPNGRF    ++CLS++DFHP++WNP WSVS+ILTGLLSFM++  PT GS+ T+   K++LA  SL+FN K+  F +LFPE V++  ++Q+   E SS
Sbjct:   56 YEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSS 179

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UB2J2_BOVIN (Ubiquitin-conjugating enzyme E2 J2 OS=Bos taurus GN=UBE2J2 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.802e-42
Identity = 73/146 (50.00%), Postives = 101/146 (69.18%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSS-PESPQGENSKPKTEKLVGSSG 436
            + GGYY+GK+ FP E+P+KPP I MITPNGRF    ++CLS++DFHP++WNP WSVS+ILTGLLSFM++  PT GS+ T+   K++LA  SL FN K+  F +LFPE V++  ++Q+   E SS P++    +  P  E   G  G
Sbjct:   56 YEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAAQSLVFNLKDKVFCELFPEVVEEIKQKQKAQDELSSRPQALPLPDVVPDGETHHGQHG 201

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UB2J2_MOUSE (Ubiquitin-conjugating enzyme E2 J2 OS=Mus musculus GN=Ube2j2 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.852e-42
Identity = 67/124 (54.03%), Postives = 93/124 (75.00%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSS 373
            + GGYY+GK+ FP E+P+KPP I MITPNGRF    ++CLS++DFHP++WNP WSVS+ILTGLLSFM++  PT GS+ T+   K++LA  SL FN K+  F +LFPE V++  ++Q+   E S+
Sbjct:   56 YEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKKQLAAQSLVFNLKDKVFCELFPEVVEEIKQKQKAQDELSN 179

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC6_CANGA (Ubiquitin-conjugating enzyme E2 6 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=UBC6 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.314e-38
Identity = 64/112 (57.14%), Postives = 83/112 (74.11%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPT-FRKLFPEYVDK 334
            + GG Y+G + FP +YPYKPP I MITPNGRF    ++CLSMSD+HP++WNP WSV++IL GLLSFM  +  TTGS+ TT  EK+ LAK S+ +N  N T F+ +FPE V+K
Sbjct:   49 YDGGQYHGTLTFPSDYPYKPPAIRMITPNGRFKENTRLCLSMSDYHPDTWNPGWSVATILNGLLSFMTGDESTTGSITTTQQEKKILAKKSMYYNTFNSTRFKLVFPEIVEK 160

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC6_YEAST (Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBC6 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.270e-37
Identity = 61/110 (55.45%), Postives = 82/110 (74.55%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNC-KNPTFRKLFPEYV 328
            + GG Y+G + FP +YPYKPP I MITPNGRF    ++CLSMSD+HP++WNP WSVS+IL GLLSFM  +  TTGS+ T+  +K+ LA+ S+S+N  +N  F+ +FPE V
Sbjct:   49 YKGGQYHGTLTFPSDYPYKPPAIRMITPNGRFKPNTRLCLSMSDYHPDTWNPGWSVSTILNGLLSFMTSDEATTGSITTSDHQKKTLARNSISYNTFQNVRFKLIFPEVV 158

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UB2J2_DICDI (Ubiquitin-conjugating enzyme E2 J2 OS=Dictyostelium discoideum GN=ube2j2 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.724e-37
Identity = 59/115 (51.30%), Postives = 82/115 (71.30%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQ 346
            + GGYY+G+I FP EYPYKPP I M TP+GRF+   +IC SMSDFHP++W+P WS  +I+ GL+SFM ++    GS+  +   +++LA  S++FN KNP F KLFPE +  Y K+
Sbjct:   51 YHGGYYHGQIIFPVEYPYKPPSILMTTPSGRFVCNSRICTSMSDFHPDTWSPFWSNCTIILGLISFMTEDENGFGSIVKSKETRKQLASQSMAFNLKNPVFVKLFPELISDYKKK 165

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC6_DEBHA (Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=UBC6 PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.495e-36
Identity = 61/110 (55.45%), Postives = 82/110 (74.55%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSF-NCKNPTFRKLFPEYV 328
            F  G Y+G ++FP EYP+KPP I+MITPNGRF    ++CLSMSD+HP++WNP WSV++ILTGLLSFM  +  TTGS+ T+   K+RLA++S  + N +N  F K FP+ V
Sbjct:   49 FEEGQYHGILRFPSEYPFKPPSISMITPNGRFACNTRLCLSMSDYHPDTWNPAWSVATILTGLLSFMTGDESTTGSITTSDNVKKRLARSSKEWNNAENQRFTKQFPDLV 158

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC6_SCHPO (Ubiquitin-conjugating enzyme E2 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubc6 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.481e-35
Identity = 63/136 (46.32%), Postives = 88/136 (64.71%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNC-KNPTFRKLFPEYVDKYNKQQQLISEHSSPESPQGENSKP 406
            + GG Y+G + FPP+YP+KPP I MITP+GRF T  ++CLS SDFHP+SWNP W VS+IL GL+SFM  +  TTG + T+ + ++  AK +  FN   NP F  +FPE +DK  +     +  ++   PQ  +S P
Sbjct:   49 YEGGQYHGTLIFPPDYPFKPPAIRMITPSGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFMTSDEITTGGIVTSESTRRTYAKDTKRFNIMDNPKFLIMFPELIDKNREDIAKAAAEAALIEPQQIHSTP 184

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0NWM3_GOSAR	2.838e-128	100.00	Ubiquitin-conjugating enzyme E2 34-like protein OS...	[more]
A0A0D2UPH2_GOSRA	2.782e-116	97.69	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2SUM5_GOSRA	2.466e-113	87.77	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0NSN3_GOSAR	7.653e-113	87.23	Ubiquitin-conjugating enzyme E2 34-like protein OS...	[more]
A0A061GJX4_THECC	3.060e-108	85.71	Ubiquitin-conjugating enzyme 34 isoform 2 OS=Theob...	[more]
A0A061GDB5_THECC	3.188e-108	85.71	Ubiquitin-conjugating enzyme 34 isoform 1 OS=Theob...	[more]
A0A067L948_JATCU	1.033e-101	80.10	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
A0A067EIR1_CITSI	2.939e-99	79.06	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
A0A067ES86_CITSI	7.756e-99	79.06	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
V4RYE9_9ROSI	3.107e-98	78.53	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 24


Match Name	E-value	Identity	Description
UBC34_ARATH	2.645e-92	72.49	Ubiquitin-conjugating enzyme E2 34 OS=Arabidopsis ...	[more]
UBC33_ARATH	4.000e-89	67.69	Probable ubiquitin-conjugating enzyme E2 33 OS=Ara...	[more]
UB2J2_HUMAN	1.000e-42	54.84	Ubiquitin-conjugating enzyme E2 J2 OS=Homo sapiens...	[more]
UB2J2_BOVIN	1.802e-42	50.00	Ubiquitin-conjugating enzyme E2 J2 OS=Bos taurus G...	[more]
UB2J2_MOUSE	7.852e-42	54.03	Ubiquitin-conjugating enzyme E2 J2 OS=Mus musculus...	[more]
UBC6_CANGA	4.314e-38	57.14	Ubiquitin-conjugating enzyme E2 6 OS=Candida glabr...	[more]
UBC6_YEAST	2.270e-37	55.45	Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces...	[more]
UB2J2_DICDI	9.724e-37	51.30	Ubiquitin-conjugating enzyme E2 J2 OS=Dictyosteliu...	[more]
UBC6_DEBHA	1.495e-36	55.45	Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces ...	[more]
UBC6_SCHPO	4.481e-35	46.32	Ubiquitin-conjugating enzyme E2 6 OS=Schizosacchar...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	GENE3D	3.10.110.10		coord: 10..112 e-value: 2.6E-13 score: 49.4
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	SUPERFAMILY	54495	UBC-like	coord: 1..81
None	No IPR available	PANTHER	PTHR24067:SF42	UBIQUITIN-CONJUGATING ENZYME E2 J2	coord: 1..100
None	No IPR available	PANTHER	PTHR24067	UBIQUITIN-CONJUGATING ENZYME E2	coord: 1..100
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..134
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 135..156
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 157..158
None	No IPR available	TMHMM	TMhelix		coord: 134..156

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0003584 ID=g.arboreum_cottongen_reftransV1_0003584; Name=g.arboreum_cottongen_reftransV1_0003584; organism=Gossypium arboreum; type=contig; length=878bp
TTTTGCAGGTGGGTATTATTATGGAAAGATCAAGTTCCCTCCAGAGTATC
CCTACAAACCTCCTGGAATCACGATGATCACCCCCAATGGACGGTTTATG
ACACAGAAGAAAATATGCTTGTCCATGAGTGATTTTCATCCAGAAAGTTG
GAATCCAATGTGGTCTGTATCAAGCATACTCACAGGGCTTCTATCTTTCA
TGATGGATAACAGTCCTACCACTGGCAGTGTAAACACTACAGCTGCTGAG
AAGCAACGCCTGGCAAAAACATCCCTTTCTTTTAATTGTAAAAACCCCAC
ATTCAGAAAATTGTTTCCAGAGTATGTCGATAAGTACAACAAGCAGCAGC
AGCTCATTTCAGAGCATTCCTCACCTGAATCACCTCAAGGAGAAAATTCA
AAACCCAAGACGGAAAAACTTGTAGGCTCTTCAGGGGAAGATGTTAAAAA
AGTCATTCCAAGAAGAAAACAGCCGTTCCCAACATGGATGATGTTTTTGC
TAGTTTCCGTCTTTGGAATTGTGATGGCATTGCCGTTGCTTCAACTTTAG
TATGAACTGGGGTACAGCATGGCAAAATTCGGTTATGGTTAGTGATATAT
ACAGTGTCTAGTTGAGGGAATCCTTTTTCAATGCTCCTTAGGGTTGTGAT
GTTCTGAAAAAAATGTATAGGGGAGTTTGATACAAGATTCCTAGGAGAGT
GAGTTGGATCTTGACTGATTATTTCATCTATGTGAAAGTTGGTGTTGGTA
ATTTAACGAGTGAGATTGAAAAAATACATGGCTTGAAATGTTGGTCGATT
TTTAGTTCGACTGTCATAAGTTTTTATACATTTATCCTCTTTATGCTCTG
AAATTAGCACAGTATATTTACCGATTCA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR016135	UBQ-conjugating_enzyme/RWD

Search form

g.arboreum_cottongen_reftransV1_0003584, g.arboreum_cottongen_reftransV1_0003584 (contig) Gossypium arboreum

Pages

Pages