g.arboreum_cottongen_reftransV1_0009030, g.arboreum_cottongen_reftransV1_0009030 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0009030
Unique Nameg.arboreum_cottongen_reftransV1_0009030
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length448
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr12chromosomeg.arboreum_cottongen_reftransV1_0009030:1..448 .
Chr12:90705920..90706367 +
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0009030 vs. ExPASy TrEMBL
Match: A0A0D2S3V8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G159500 PE=4 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.945e-54
Identity = 122/149 (81.88%), Postives = 126/149 (84.56%), Query Frame = 1 
Query:    1 ELHDAEPDDVFRQGNDVSLNGMEYGKSSAYGLQEQWMAFRXXXXXXXXXXXXXXXXXXXXXRFKWRRTNWNQDKDLDKMRLENDCMKLANERLAFKLVTRK*VVSETEYVL*FGYFLELYFKFSVTKDLLGLFTVVNIVTSCFLK*YVM 447
            ELHDAEPDDVF +GNDVSLNGMEYGKSSAYGLQEQWMAFRLLELQK KLQIQVQKLELEKKRFKWRRTNWNQDKDLDK RLEN+CMKLANE LAF+L TRK VVSET+                VTKDLLGLFTVVNIVTSCFLK YVM
Sbjct:  232 ELHDAEPDDVFHKGNDVSLNGMEYGKSSAYGLQEQWMAFRLLELQKLKLQIQVQKLELEKKRFKWRRTNWNQDKDLDKTRLENECMKLANELLAFELGTRKGVVSETD----------------VTKDLLGLFTVVNIVTSCFLKQYVM 364
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BLAST of g.arboreum_cottongen_reftransV1_0009030 vs. ExPASy TrEMBL
Match: A0A061E577_THECC (Sequence-specific DNA binding transcription factors, putative OS=Theobroma cacao GN=TCM_006442 PE=4 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.021e-11
Identity = 51/76 (67.11%), Postives = 63/76 (82.89%), Query Frame = 1 
Query:   76 KSSAYGLQEQWMAFRXXXXXXXXXXXXXXXXXXXXXRFKWRRTNWNQDKDLDKMRLENDCMKLANERLAFKLVTRK 303
            KS + GLQEQWMAFRLL+L++QKL IQVQKLELEK+R KW+R NW  +++LDKMRLEN CMK  N+ LAF+L  +K
Sbjct:  192 KSKSDGLQEQWMAFRLLQLKEQKLYIQVQKLELEKQRSKWQRVNWYNNRNLDKMRLENQCMKFENKCLAFELKRKK 267
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0009030 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0D2S3V8_GOSRA1.945e-5481.88Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061E577_THECC9.021e-1167.11Sequence-specific DNA binding transcription factor... [more]
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BLAST of g.arboreum_cottongen_reftransV1_0009030 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 38..65
NoneNo IPR availablePANTHERPTHR21654:SF11F16F4.11 PROTEINcoord: 2..96
NoneNo IPR availablePANTHERPTHR21654FAMILY NOT NAMEDcoord: 2..96

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0009030 ID=g.arboreum_cottongen_reftransV1_0009030; Name=g.arboreum_cottongen_reftransV1_0009030; organism=Gossypium arboreum; type=contig; length=448bp
GAACTGCACGATGCTGAACCGGATGATGTGTTTCGTCAGGGAAACGACGT
GAGTTTGAACGGTATGGAGTATGGCAAAAGCAGCGCCTATGGATTGCAAG
AGCAATGGATGGCATTCCGTTTACTCGAGCTGCAAAAGCAGAAGTTACAA
ATTCAGGTACAAAAGCTTGAGCTTGAAAAGAAACGGTTTAAGTGGCGAAG
GACAAATTGGAACCAGGACAAGGATTTAGATAAGATGAGGCTGGAAAATG
ACTGCATGAAGCTTGCAAATGAGCGTTTGGCATTCAAGTTAGTAACAAGG
AAATGAGTAGTTTCTGAAACTGAGTACGTGTTGTGATTCGGGTACTTCTT
GGAATTGTATTTTAAGTTTAGTGTAACGAAAGACTTACTAGGTTTGTTTA
CGGTTGTCAATATCGTCACCTCATGTTTTCTTAAATGATACGTTATGG
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