g.arboreum_cottongen_reftransV1_0005544, g.arboreum_cottongen_reftransV1_0005544 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0005544
Unique Name	g.arboreum_cottongen_reftransV1_0005544
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	667

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr13	chromosome	g.arboreum_cottongen_reftransV1_0005544:1..667 . Chr13:74215725..74216874 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: A0A0B0MFZ3_GOSAR (Telomere repeat-binding 4-like protein OS=Gossypium arboreum GN=F383_18493 PE=4 SV=1)

HSP 1 Score: 382.489 bits (981), Expect = 1.381e-125
Identity = 221/222 (99.55%), Postives = 221/222 (99.55%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            VMEAVTALLGGRIRVGVLLQGKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHV SQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFSVSEVEALVQAVEELGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP
Sbjct:  395 VMEAVTALLGGRIRVGVLLQGKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVLSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFSVSEVEALVQAVEELGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 616

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: A0A0D2TTB8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G021300 PE=4 SV=1)

HSP 1 Score: 360.918 bits (925), Expect = 4.873e-117
Identity = 214/222 (96.40%), Postives = 214/222 (96.40%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            VMEAVTALLGGRIRVGVLLQGKKVRDDSRTLLQTGISSEDNL ALGFTLEPGPVIAP PICSEEP LQLP GSAPQNLT SLVVTPALDTGI  ATPDPPLLTNSAK VDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFSVSEVEALVQAVEELGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP
Sbjct:  416 VMEAVTALLGGRIRVGVLLQGKKVRDDSRTLLQTGISSEDNLGALGFTLEPGPVIAPPPICSEEPLLQLPCGSAPQNLTRSLVVTPALDTGIPDATPDPPLLTNSAKSVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFSVSEVEALVQAVEELGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 637

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: A0A061FLR9_THECC (Telomeric DNA binding protein 1, putative isoform 1 OS=Theobroma cacao GN=TCM_042704 PE=4 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.572e-94
Identity = 189/222 (85.14%), Postives = 197/222 (88.74%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            VMEAVTALLGG IRVGVLLQGKKVRDDSRTL QTGIS EDNLDA+GFTLEPGP  AP  +CSEEPPL L   +APQNL SS   TPA+DTGI  A+PDPP LTNSA  VDSN E VSSQTDMLTDQ+L +SRALVPVPAMNVEALAVVPVNQK RKSELA RRTRRPFSVSEVEALVQAVEELGTGRWRDVKLRAFENA+HRTYVDLKDKWKTLVHTAKISP
Sbjct:  428 VMEAVTALLGGGIRVGVLLQGKKVRDDSRTLSQTGISCEDNLDAIGFTLEPGPAKAPPLVCSEEPPLLLSCDAAPQNLISS-PATPAVDTGILDASPDPPSLTNSANHVDSNNEPVSSQTDMLTDQSLPQSRALVPVPAMNVEALAVVPVNQKSRKSELAHRRTRRPFSVSEVEALVQAVEELGTGRWRDVKLRAFENAEHRTYVDLKDKWKTLVHTAKISP 648

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: A0A0D2UYC8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G266100 PE=4 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 9.221e-94
Identity = 181/222 (81.53%), Postives = 196/222 (88.29%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            VMEAVTALLGG IRVGVLLQGKKVRDDSRTL QTGIS E+NLD+LGFTLEPGP  AP P+CSEEPPL +    APQ LTS L  TP +D  I  ATPDP LLTN+A PVDSN+E VSSQTD+LTDQ+LSESRA+VPVPAMNVEALAV+P + K+RK+ELAQRRTRRPFSV EVEALVQAVEELGTGRWRD+KLRAFENADHRTYVDLKDKWKTLVHTAKISP
Sbjct:  260 VMEAVTALLGGGIRVGVLLQGKKVRDDSRTLSQTGISCEENLDSLGFTLEPGPAKAPPPVCSEEPPLLISCDKAPQQLTS-LPATPVVDMAIPDATPDPLLLTNTAHPVDSNHEPVSSQTDVLTDQSLSESRAIVPVPAMNVEALAVIPASPKVRKTELAQRRTRRPFSVLEVEALVQAVEELGTGRWRDIKLRAFENADHRTYVDLKDKWKTLVHTAKISP 480

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: A0A0D2TE13_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G266100 PE=4 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 1.492e-92
Identity = 181/222 (81.53%), Postives = 196/222 (88.29%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            VMEAVTALLGG IRVGVLLQGKKVRDDSRTL QTGIS E+NLD+LGFTLEPGP  AP P+CSEEPPL +    APQ LTS L  TP +D  I  ATPDP LLTN+A PVDSN+E VSSQTD+LTDQ+LSESRA+VPVPAMNVEALAV+P + K+RK+ELAQRRTRRPFSV EVEALVQAVEELGTGRWRD+KLRAFENADHRTYVDLKDKWKTLVHTAKISP
Sbjct:  404 VMEAVTALLGGGIRVGVLLQGKKVRDDSRTLSQTGISCEENLDSLGFTLEPGPAKAPPPVCSEEPPLLISCDKAPQQLTS-LPATPVVDMAIPDATPDPLLLTNTAHPVDSNHEPVSSQTDVLTDQSLSESRAIVPVPAMNVEALAVIPASPKVRKTELAQRRTRRPFSVLEVEALVQAVEELGTGRWRDIKLRAFENADHRTYVDLKDKWKTLVHTAKISP 624

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: A0A0B0PTZ1_GOSAR (Telomere repeat-binding 3-like protein OS=Gossypium arboreum GN=F383_05288 PE=4 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 1.390e-91
Identity = 180/222 (81.08%), Postives = 195/222 (87.84%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            VMEAVTALLGG IRVGVLLQGKKVRDDSRTL QTGIS E+NLD+LGFTLEPGP  AP P+CSEEPPL +     PQ LTS L  TP  DT I  ATPDP LLT++A PVDSN+E VSSQTD+LTDQ+LSESRA+VPVPAMNVEALAV+P + K+RK+ELAQRRTRRPFSV EVEALVQAVEELGTGRWRD+KLRAFENADHRTYVDLKDKWKTLVHTAKISP
Sbjct:  428 VMEAVTALLGGGIRVGVLLQGKKVRDDSRTLSQTGISCEENLDSLGFTLEPGPAKAPPPVCSEEPPLLMSCEKGPQQLTS-LPATPVADTAIPDATPDPLLLTDTAHPVDSNHEPVSSQTDVLTDQSLSESRAIVPVPAMNVEALAVIPASPKVRKTELAQRRTRRPFSVLEVEALVQAVEELGTGRWRDIKLRAFENADHRTYVDLKDKWKTLVHTAKISP 648

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: A0A0D2V9D4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G021300 PE=4 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 9.099e-90
Identity = 180/197 (91.37%), Postives = 183/197 (92.89%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFE 592
            VMEAVTALLGGRIRVGVLLQGKKVRDDSRTLLQTGISSEDNL ALGFTLEPGPVIAP PICSEEP LQLP GSAPQNLT SLVVTPALDTGI  ATPDPPLLTNSAK VDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFSVSEVEALVQAVEELGTGR++      F+
Sbjct:  416 VMEAVTALLGGRIRVGVLLQGKKVRDDSRTLLQTGISSEDNLGALGFTLEPGPVIAPPPICSEEPLLQLPCGSAPQNLTRSLVVTPALDTGIPDATPDPPLLTNSAKSVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFSVSEVEALVQAVEELGTGRYKTNCFFCFD 612

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: A0A061FM89_THECC (Telomeric DNA binding protein 1, putative isoform 3 OS=Theobroma cacao GN=TCM_042704 PE=4 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 1.732e-84
Identity = 176/211 (83.41%), Postives = 185/211 (87.68%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKW 634
            VMEAVTALLGG IRVGVLLQGKKVRDDSRTL QTGIS EDNLDA+GFTLEPGP  AP  +CSEEPPL L   +APQNL SS   TPA+DTGI  A+PDPP LTNSA  VDSN E VSSQTDMLTDQ+L +SRALVPVPAMNVEALAVVPVNQK RKSELA RRTRRPFSVSEVEALVQAVEELGTGRWRDVKLRAFENA+HRTYVDLK K+
Sbjct:  428 VMEAVTALLGGGIRVGVLLQGKKVRDDSRTLSQTGISCEDNLDAIGFTLEPGPAKAPPLVCSEEPPLLLSCDAAPQNLISS-PATPAVDTGILDASPDPPSLTNSANHVDSNNEPVSSQTDMLTDQSLPQSRALVPVPAMNVEALAVVPVNQKSRKSELAHRRTRRPFSVSEVEALVQAVEELGTGRWRDVKLRAFENAEHRTYVDLKVKY 637

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: B5TFM5_CARPA (Putative double-strand telomere binding protein 1 OS=Carica papaya GN=TRFL1 PE=4 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 7.344e-79
Identity = 168/222 (75.68%), Postives = 182/222 (81.98%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            VMEAVTAL+GG IRVGVL++GKK+RDD RTL QTGIS +DNLDALGFTLEP    AP PIC E+ P  LP  + P  L S L   PAL+ GI  A PDP  L +S   VDSN+E VSS  D LTD+  S+SRALVPVPAM+VEALAVVPVNQKIRKSELAQRRTRRPFSVSEVEALVQAVEELGTGRWRDVKLRAFE+ADHRTYVDLKDKWKTLVHTA ISP
Sbjct:  371 VMEAVTALVGGGIRVGVLVKGKKIRDDDRTLSQTGISCKDNLDALGFTLEPTHAQAPPPICPEDHPPLLP--NDPTLLLSRLSAAPALELGIPNAIPDPTSLNDSGNHVDSNHEIVSSYVDSLTDKPPSDSRALVPVPAMSVEALAVVPVNQKIRKSELAQRRTRRPFSVSEVEALVQAVEELGTGRWRDVKLRAFEDADHRTYVDLKDKWKTLVHTATISP 590

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: A0A0B0NWP1_GOSAR (Telomere repeat-binding 3-like protein OS=Gossypium arboreum GN=F383_17087 PE=4 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 4.577e-77
Identity = 165/223 (73.99%), Postives = 184/223 (82.51%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVP--AMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKIS 664
            VMEAVTAL+GG IRVG+LLQGKKVRDDSR L Q GIS +DNLDALGFTLEPGP  AP  +CSEEPPL L   +A QNLTSSL   PA++TGI   TP+ P LTNS  P  +++E VSS+ DM TDQ+L ESRALVPVP  A NVEAL  V VNQK +KSELAQRR  RPFS+SEVEALVQAVEE+GTGRWRD+KLRAFE+ADHRTYV+LKDKWKTLVHTAKIS
Sbjct:  375 VMEAVTALIGGGIRVGLLLQGKKVRDDSRALSQAGISCDDNLDALGFTLEPGPAKAPPTMCSEEPPLLLSYDAALQNLTSSLAA-PAVNTGIPNCTPNLPFLTNSENPA-TDHEPVSSKIDMPTDQSLLESRALVPVPVPATNVEALTAVAVNQKFQKSELAQRRIWRPFSISEVEALVQAVEEIGTGRWRDIKLRAFESADHRTYVNLKDKWKTLVHTAKIS 595

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Match: TRP3_ARATH (Telomere repeat-binding protein 3 OS=Arabidopsis thaliana GN=TRP3 PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 3.311e-63
Identity = 139/222 (62.61%), Postives = 169/222 (76.13%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            VMEAV+ LL G IRVGVL+ GKKVRD+ +TL QTGIS ++NLD LGFTLEP P   P P+CSE+P +     + P +L+     +P LD+GI    P    + +S   VDSN E V  Q D+  D+  S+S+ LVP+P + V+ALA+VP+NQK +++ELAQRRTRRPFSV+EVEALVQAVEELGTGRWRDVKLRAFE+ADHRTYVDLKDKWKTLVHTA ISP
Sbjct:  353 VMEAVSVLLSGGIRVGVLMHGKKVRDERKTLSQTGISCDENLDNLGFTLEPSPSKVPLPLCSEDPAVP----TDPTSLSERSAASPMLDSGI----PHADDVIDSRNIVDSNLELVPYQGDISVDEPSSDSKELVPLPELEVKALAIVPLNQKPKRTELAQRRTRRPFSVTEVEALVQAVEELGTGRWRDVKLRAFEDADHRTYVDLKDKWKTLVHTASISP 566

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Match: TRP4_ARATH (Telomere repeat-binding protein 4 OS=Arabidopsis thaliana GN=TRP4 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.053e-60
Identity = 140/223 (62.78%), Postives = 166/223 (74.44%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQN-LSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            V EAVTALLGG IR+GVL+QGKKVRDD+ TL QTG+S  +NL  LGFTLEPG    P P+CSE P L LP  S    L+     +PAL+TGI     D   L N    V++N E V   +D+  D+   S+SRALVPV A+  +ALA+VPVN+K +++EL+QRRTRRPFSV+EVEALV AVEE+GTGRWRDVKLR+FENA HRTYVDLKDKWKTLVHTA ISP
Sbjct:  372 VKEAVTALLGGGIRIGVLVQGKKVRDDNNTLSQTGLSCRENLGNLGFTLEPGLETLPVPLCSETPVLSLPTDST--KLSERSAASPALETGIPLPPQDEDYLINLGNSVENNDELVPHLSDIPADEQPSSDSRALVPVLALESDALALVPVNEKPKRTELSQRRTRRPFSVTEVEALVSAVEEVGTGRWRDVKLRSFENASHRTYVDLKDKWKTLVHTASISP 592

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Match: TRP5_ARATH (Telomere repeat-binding protein 5 OS=Arabidopsis thaliana GN=TRP5 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.562e-42
Identity = 119/222 (53.60%), Postives = 147/222 (66.22%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            V+EAVT++LGG +R+GVL+ GKKVRDDS+ LLQTG+S +   D LGF LEP P  + +P+  E+     P  + P  LT  L              P P      AKP +S    + S+           SRAL+PV  ++ +AL VVP  +K ++SE+AQRR RRPFSV+EVEALVQAVE LGTGRWRDVKLRAF+NA HRTYVDLKDKWKTLVHTA+ISP
Sbjct:  383 VLEAVTSILGGGLRIGVLVHGKKVRDDSKMLLQTGLSLDTLSDTLGFCLEPNPPQSTKPLSPEDSDFARP-CNVPHTLTRCL--------------PSP---GKHAKPSNSVESDLDSKPSAPNRGKTIYSRALIPVSPLHAQALTVVPP-RKTKRSEVAQRRIRRPFSVAEVEALVQAVERLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARISP 585

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Match: TRP2_ARATH (Telomere repeat-binding protein 2 OS=Arabidopsis thaliana GN=TRP2 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.315e-40
Identity = 122/227 (53.74%), Postives = 151/227 (66.52%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDN-LDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSE-SRALVPVPAMNVEALAVVPVNQKIRKSE---LAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            VMEAVT +LG  +RVG+++QGKKVRDD +TLLQTGIS E+N LD+LGF+LEP     P+P                  L SS +   A D        D  L  ++A  +DS++E   S  D       S+ SRAL+PV +  +  LA  P N+K +++E    AQRR RRPFSV+EVEALVQAVE+LGTGRWRDVK+RAFE+ADHRTYVDLKDKWKTLVHTA+ISP
Sbjct:  314 VMEAVTTILGDGLRVGLMVQGKKVRDDGKTLLQTGISEENNHLDSLGFSLEPSLETTPQP------------------LLSSYLSDHACD--------DVTLCHDNA--LDSSHEPEPSPADSFGKLGTSDHSRALIPVASAAM--LAPRPPNRKFKRTEQQLAAQRRIRRPFSVTEVEALVQAVEKLGTGRWRDVKVRAFEDADHRTYVDLKDKWKTLVHTARISP 510

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Match: TBP1_ORYSJ (Telomere-binding protein 1 OS=Oryza sativa subsp. japonica GN=TBP1 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 2.250e-28
Identity = 96/224 (42.86%), Postives = 130/224 (58.04%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLE--PGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            V +AVT ++   +RVG+LLQGK +++D++TL Q GI     L+ +GFTLE   G    P  I  EE            +   + VV  +          +  L+ +      S+   V    +  T +  + S+A+VP    N  ALA VP+++  ++ +  QRR RRPF+V+EVE LV+AVE LGTGRWRDVK RAFEN  HRTYVDLKDKWKTLVHTA I+P
Sbjct:  380 VSDAVTTIIERGLRVGILLQGKNIQNDNKTLRQAGICRGKKLNDIGFTLECEAGQDSHPGVIVPEE-----------MDFVGASVVDKSATVKCEEPAENQQLMQDFPGCSLSDPGSVDYPVEWSTQETSASSQAIVPFADPNSLALANVPLSRS-KRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAP 591

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Match: TRP1_ARATH (Telomere repeat-binding protein 1 OS=Arabidopsis thaliana GN=TRP1 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 6.009e-27
Identity = 113/231 (48.92%), Postives = 145/231 (62.77%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSED-NLDALGFTLEPGPVIAPRPICSEEPPL--QLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSE-SRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRR-----PFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            VMEAV+ LL    RVG+++QGKKVRDD++TL QTGIS ++ +LD+L F+LEP          SE P L    P G A + L      T  +D  + +   D  L      P DS           L + N++E S+A++ V A+N  +    P ++K R+SE  Q++  +     PFSV+EVEALVQAVE+LGTGRWRDVKL AFE+ADHRTYVDLKDKWKTLVHTAKISP
Sbjct:  322 VMEAVSTLLSDGHRVGLMVQGKKVRDDNKTLHQTGISQDNSHLDSLDFSLEPS---------SEMPQLLTSHPLGHACEELLPVCQATK-IDNVLESDHHDSALF-----PSDS-----------LGNNNVTEDSKAMISV-ALNELSSQSQPPSRKSRRSEQQQQQAAQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISP 525

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Match: TRP6_ARATH (Telomere repeat-binding protein 6 OS=Arabidopsis thaliana GN=TRP6 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.582e-20
Identity = 60/81 (74.07%), Postives = 66/81 (81.48%), Query Frame = 2

Query:  425 VEALAVVPVNQK-IRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKIS 664
            V A +VVPV  K   + E+ QRR RRPF+VSEVEALVQAVE LGTGRWRDVK  AF + +HRTYVDLKDKWKTLVHTAKIS
Sbjct:  291 VAAKSVVPVRMKPAWQPEMVQRRIRRPFTVSEVEALVQAVERLGTGRWRDVKSHAFNHVNHRTYVDLKDKWKTLVHTAKIS 371

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0MFZ3_GOSAR	1.381e-125	99.55	Telomere repeat-binding 4-like protein OS=Gossypiu...	[more]
A0A0D2TTB8_GOSRA	4.873e-117	96.40	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061FLR9_THECC	1.572e-94	85.14	Telomeric DNA binding protein 1, putative isoform ...	[more]
A0A0D2UYC8_GOSRA	9.221e-94	81.53	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2TE13_GOSRA	1.492e-92	81.53	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0PTZ1_GOSAR	1.390e-91	81.08	Telomere repeat-binding 3-like protein OS=Gossypiu...	[more]
A0A0D2V9D4_GOSRA	9.099e-90	91.37	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061FM89_THECC	1.732e-84	83.41	Telomeric DNA binding protein 1, putative isoform ...	[more]
B5TFM5_CARPA	7.344e-79	75.68	Putative double-strand telomere binding protein 1 ...	[more]
A0A0B0NWP1_GOSAR	4.577e-77	73.99	Telomere repeat-binding 3-like protein OS=Gossypiu...	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 7


Match Name	E-value	Identity	Description
TRP3_ARATH	3.311e-63	62.61	Telomere repeat-binding protein 3 OS=Arabidopsis t...	[more]
TRP4_ARATH	1.053e-60	62.78	Telomere repeat-binding protein 4 OS=Arabidopsis t...	[more]
TRP5_ARATH	1.562e-42	53.60	Telomere repeat-binding protein 5 OS=Arabidopsis t...	[more]
TRP2_ARATH	2.315e-40	53.74	Telomere repeat-binding protein 2 OS=Arabidopsis t...	[more]
TBP1_ORYSJ	2.250e-28	42.86	Telomere-binding protein 1 OS=Oryza sativa subsp. ...	[more]
TRP1_ARATH	6.009e-27	48.92	Telomere repeat-binding protein 1 OS=Arabidopsis t...	[more]
TRP6_ARATH	1.582e-20	74.07	Telomere repeat-binding protein 6 OS=Arabidopsis t...	[more]

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 163..216 e-value: 1.6E-7 score: 41.0
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 164..213 e-value: 1.5E-5 score: 24.9
IPR009057	Homeodomain-like	GENE3D	1.10.10.60		coord: 164..214 e-value: 2.0E-10 score: 40.0
IPR009057	Homeodomain-like	SUPERFAMILY	46689	Homeodomain-like	coord: 161..215
None	No IPR available	PANTHER	PTHR21717:SF9	PROTEIN TBF1	coord: 1..221
None	No IPR available	PANTHER	PTHR21717	TELOMERIC REPEAT BINDING PROTEIN	coord: 1..221
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 159..218 score: 16.376

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0005544 ID=g.arboreum_cottongen_reftransV1_0005544; Name=g.arboreum_cottongen_reftransV1_0005544; organism=Gossypium arboreum; type=contig; length=667bp
TGTAATGGAGGCGGTGACTGCCTTACTTGGAGGTAGAATCCGTGTTGGGG
TACTCCTTCAAGGGAAGAAAGTGAGAGATGACAGTCGAACTCTATTACAA
ACCGGTATTTCATCTGAAGACAATTTGGATGCTCTGGGTTTCACTTTGGA
GCCTGGTCCCGTGATAGCTCCTCGACCTATATGCTCCGAAGAACCCCCTC
TACAGTTGCCACGTGGCTCTGCCCCTCAAAATTTAACAAGCTCTTTAGTA
GTCACACCAGCCTTAGATACGGGGATTTCAGCTGCCACACCTGACCCACC
TTTACTGACCAATTCAGCAAAACCTGTGGATAGTAATTATGAACACGTTT
CCTCCCAAACTGACATGCTAACCGATCAAAATCTGTCAGAGTCTAGAGCT
CTGGTTCCAGTTCCAGCGATGAATGTCGAGGCACTAGCTGTTGTCCCTGT
CAACCAGAAAATTCGGAAATCTGAGCTTGCACAGCGTAGAACCAGGAGGC
CATTTTCCGTGTCAGAAGTAGAAGCATTGGTACAGGCTGTTGAGGAGCTC
GGAACCGGAAGGTGGCGGGATGTTAAATTGCGAGCTTTTGAGAATGCTGA
CCATCGAACTTATGTGGATCTGAAGGATAAATGGAAAACATTGGTTCACA
CAGCAAAAATTTCGCCG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf
IPR017930	Myb_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Search form

g.arboreum_cottongen_reftransV1_0005544, g.arboreum_cottongen_reftransV1_0005544 (contig) Gossypium arboreum

Pages