g.arboreum_cottongen_reftransV1_0018382, g.arboreum_cottongen_reftransV1_0018382 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: A0A0B0NET2_GOSAR (Phytochrome OS=Gossypium arboreum GN=F383_07338 PE=3 SV=1) HSP 1 Score: 226.483 bits (576), Expect = 2.472e-66 Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL Sbjct: 573 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 682
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: A0A0D2UNN6_GOSRA (Phytochrome OS=Gossypium raimondii GN=B456_011G040900 PE=3 SV=1) HSP 1 Score: 217.238 bits (552), Expect = 5.115e-63 Identity = 105/110 (95.45%), Postives = 109/110 (99.09%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLIMRDSF+DMEESGSKELACGQQNDTETEGINEI SVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDS+EVY+NLIGRAL Sbjct: 573 IHSLQLIMRDSFQDMEESGSKELACGQQNDTETEGINEIISVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSREVYENLIGRAL 682
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: A0A061GE12_THECC (Phytochrome E isoform 2 OS=Theobroma cacao GN=TCM_029563 PE=4 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.636e-46 Identity = 80/110 (72.73%), Postives = 95/110 (86.36%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLIMRDSF+ ME+SGSK L +QNDTE +G+ E+SSV YEMVRLIET TAP+FGV+TAG+INGWNAK+AELTGLQAD A+G+SL +EVVHEDS EV NL+ RAL Sbjct: 575 IHSLQLIMRDSFQGMEDSGSKGLVYARQNDTEMQGMGELSSVTYEMVRLIETATAPIFGVNTAGLINGWNAKIAELTGLQADDAMGRSLVNEVVHEDSHEVIANLLRRAL 684
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: A0A061GL48_THECC (Phytochrome OS=Theobroma cacao GN=TCM_029563 PE=3 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 6.183e-46 Identity = 80/110 (72.73%), Postives = 95/110 (86.36%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLIMRDSF+ ME+SGSK L +QNDTE +G+ E+SSV YEMVRLIET TAP+FGV+TAG+INGWNAK+AELTGLQAD A+G+SL +EVVHEDS EV NL+ RAL Sbjct: 575 IHSLQLIMRDSFQGMEDSGSKGLVYARQNDTEMQGMGELSSVTYEMVRLIETATAPIFGVNTAGLINGWNAKIAELTGLQADDAMGRSLVNEVVHEDSHEVIANLLRRAL 684
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: B9S180_RICCO (Phytochrome OS=Ricinus communis GN=RCOM_0634650 PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 3.319e-42 Identity = 75/110 (68.18%), Postives = 92/110 (83.64%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLIMRDSF+DME+S SK + QQ DT+ +GI+E+SSVA EMVRLIET TAP+FGVD+AG +NGWNAK+AELTGLQA A+GKSL EVVH+DS E ++L+ RAL Sbjct: 570 IHSLQLIMRDSFQDMEDSASKAMVNAQQTDTDVQGIDELSSVACEMVRLIETATAPIFGVDSAGSVNGWNAKIAELTGLQASEAMGKSLVREVVHKDSYEFVESLLCRAL 679
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: A0A067JEN0_JATCU (Phytochrome OS=Jatropha curcas GN=JCGZ_21669 PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 2.453e-41 Identity = 74/110 (67.27%), Postives = 93/110 (84.55%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLIMRDSF+DME+SGSK + ++ D E +GI+E+SSVA EMVRLIET TAP+FGVD+AG+INGWN+KVAELTGLQ A+GKSL E+VHEDS+ V ++L+ RAL Sbjct: 570 IHSLQLIMRDSFQDMEDSGSKAIVYDRRTDIEMQGIDELSSVACEMVRLIETATAPIFGVDSAGLINGWNSKVAELTGLQTSAAMGKSLVHEIVHEDSRGVVESLLCRAL 679
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: F6HMG7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g02680 PE=4 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 5.225e-39 Identity = 70/110 (63.64%), Postives = 89/110 (80.91%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLIMRDSF+D+E+S K + Q+ D+E +G+NE+ SVA EMV+LIET TAP+FGVD++G INGWNAK+AELTGLQA A+GKSL DE+VHED + NL+ RAL Sbjct: 500 IHSLQLIMRDSFQDIEDSSGKVMVHTQKYDSEMQGLNELGSVACEMVKLIETATAPIFGVDSSGCINGWNAKIAELTGLQAKEAMGKSLVDEIVHEDLRGAVDNLLCRAL 609
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KVY3_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 5.716e-39 Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLIMRDS+R +E+SG K L Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA AIGKSL +++V EDS+ V +NL+ RA Sbjct: 547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KVY1_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 5.774e-39 Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLIMRDS+R +E+SG K L Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA AIGKSL +++V EDS+ V +NL+ RA Sbjct: 547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KVY5_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 5.833e-39 Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLIMRDS+R +E+SG K L Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA AIGKSL +++V EDS+ V +NL+ RA Sbjct: 547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYE_IPONI (Phytochrome E OS=Ipomoea nil GN=PHYE PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 7.049e-37 Identity = 65/110 (59.09%), Postives = 86/110 (78.18%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLIMRDS + + E+ K ++ QQND++ E+SS+A E+VRL+ET T P+FGVD++G+INGWNAK+AELTGLQA+ AIGK L D+V HEDS E +K L+ RAL Sbjct: 557 IHSLQLIMRDSLQGIGENYMKSVSSPQQNDSDGVRFYELSSMALELVRLVETATVPIFGVDSSGLINGWNAKIAELTGLQANVAIGKYLIDDVTHEDSHETFKALMCRAL 666
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYB_SORBI (Phytochrome B OS=Sorghum bicolor GN=PHYB PE=3 SV=2) HSP 1 Score: 130.568 bits (327), Expect = 2.977e-34 Identity = 66/114 (57.89%), Postives = 85/114 (74.56%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEE--SGSKELACGQQN--DTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLI+RDSFRD E S SK + GQ + E GINE+SSVA EMVRLIET T P+F VDT G INGWNAK+AELTGL + A+GKSL ++++ ++S+E+ + L+ RAL Sbjct: 623 IHSLQLILRDSFRDAAEGTSNSKAIVNGQVQLGELELRGINELSSVAREMVRLIETATVPIFAVDTDGCINGWNAKIAELTGLSVEEAMGKSLVNDLIFKESEEIVEKLLSRAL 736
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYB_SOLTU (Phytochrome B OS=Solanum tuberosum GN=PHYB PE=3 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 1.043e-33 Identity = 63/110 (57.27%), Postives = 82/110 (74.55%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLI+RDSF+D E S SK + + E +GI+E+SSVA EMVRLIET TAP+F VD G INGWNAKVAELTG+ + A+GKSL ++V+++SQE + L+ AL Sbjct: 580 IHSLQLILRDSFKDAEASNSKAIVHAHLGEMELQGIDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVAELTGVSVEEAMGKSLVHDLVYKESQETAEKLLYNAL 689
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYB_ORYSI (Phytochrome B OS=Oryza sativa subsp. indica GN=PHYB PE=3 SV=2) HSP 1 Score: 127.487 bits (319), Expect = 3.458e-33 Identity = 66/114 (57.89%), Postives = 83/114 (72.81%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEE--SGSKELACGQQN--DTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLI+RDSFRD E S SK + GQ + E GI+E+SSVA EMVRLIET T P+F VDT G INGWNAKVAELTGL + A+GKSL ++++ ++S+E L+ RAL Sbjct: 616 IHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELSSVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEETVNKLLSRAL 729
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYB_ORYSJ (Phytochrome B OS=Oryza sativa subsp. japonica GN=PHYB PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 3.595e-33 Identity = 66/114 (57.89%), Postives = 83/114 (72.81%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEE--SGSKELACGQQN--DTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLI+RDSFRD E S SK + GQ + E GI+E+SSVA EMVRLIET T P+F VDT G INGWNAKVAELTGL + A+GKSL ++++ ++S+E L+ RAL Sbjct: 616 IHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELSSVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEETVNKLLSRAL 729
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHY_ADICA (Phytochrome 1 OS=Adiantum capillus-veneris GN=PHY1 PE=2 SV=2) HSP 1 Score: 125.946 bits (315), Expect = 1.117e-32 Identity = 59/110 (53.64%), Postives = 85/110 (77.27%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLI+R SF+D+++S +K + + ND + +G++E+S+VA EMVRLIET TAP+ VD G+INGWN KVAELTGL + A+GKSLA E+VHE+S+ + + ++ AL Sbjct: 565 IHSLQLILRGSFQDIDDSNTKTMIHARLNDLKLQGLDELSTVASEMVRLIETATAPILAVDGQGLINGWNGKVAELTGLSFETAMGKSLAKELVHEESKTIVERVLHLAL 674
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYB_TOBAC (Phytochrome B OS=Nicotiana tabacum GN=PHYB PE=2 SV=2) HSP 1 Score: 124.79 bits (312), Expect = 2.679e-32 Identity = 64/110 (58.18%), Postives = 81/110 (73.64%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+ LI+RDSF+D E S SK + Q + E +GI+E+SSVA EMVRLIET TAP+F VD G INGWNAKVAELT L + A+GKSL ++VH++SQE + L+ AL Sbjct: 583 IHSL-LILRDSFKDAEASNSKAVVHAQLGEMELQGIDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVAELTDLSVEEAMGKSLVHDLVHKESQETAEKLLFNAL 691
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYB_SOYBN (Phytochrome B OS=Glycine max GN=PHYB PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.285e-31 Identity = 58/108 (53.70%), Postives = 79/108 (73.15%), Query Frame = -1 Query: 8 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGR 331 IHS+QLI+RDSF+D E SK + ++ E +G++E+SSVA EMVRLIET TAP+F VD G +NGWNAKV+ELTGL + A+GKSL ++V ++S+E L+ R Sbjct: 605 IHSLQLILRDSFKDAEHRNSKAVVDPHVSEQELQGVDELSSVAREMVRLIETATAPIFAVDVDGHVNGWNAKVSELTGLPVEEAMGKSLVHDLVFKESEETVNKLLSR 712
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYB1_SOLLC (Phytochrome B1 OS=Solanum lycopersicum GN=PHYB1 PE=2 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.123e-31 Identity = 65/112 (58.04%), Postives = 83/112 (74.11%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESGSKEL--ACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLI+RDSF+D E S SK + A G+ E +GI+E+SSVA EMVRLIET TAP+FGVD G INGWN KV ELTGL A+ A GKSL ++++++SQE + L+ AL Sbjct: 582 IHSLQLILRDSFKDAEASNSKAIVHALGEM---ELQGIDELSSVAREMVRLIETATAPIFGVDVNGRINGWNEKVVELTGLSAEEAKGKSLVHDLLYKESQESAEKLLYNAL 690
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHY_PINSY (Phytochrome OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.308e-30 Identity = 59/110 (53.64%), Postives = 79/110 (71.82%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLI+R SFRD+++SG+K + + N +GI+E+SSVA EMVRLIET TAP+ VD G++NGWNAKVAELTGL A+G SL ++V E S E + ++ AL Sbjct: 580 IHSLQLILRCSFRDIDDSGTKTMVHSRLNYLRLQGIDELSSVASEMVRLIETATAPILAVDYNGLVNGWNAKVAELTGLPVGEAMGMSLVQDLVFEQSVERVEKMLHNAL 689 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to top
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0018382 ID=g.arboreum_cottongen_reftransV1_0018382; Name=g.arboreum_cottongen_reftransV1_0018382; organism=Gossypium arboreum; type=contig; length=331bpback to top |