g.arboreum_cottongen_reftransV1_0014722, g.arboreum_cottongen_reftransV1_0014722 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: A0A0A0L111_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002650 PE=4 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 1.990e-56 Identity = 88/108 (81.48%), Postives = 98/108 (90.74%), Query Frame = 2 Query: 2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325 RSRQE+L TPRPT+HWPF +KG+GKG L SPHTPKAPRHGPRPPSR+KV+E+RQ+AAVLFQ+SAFP RCMVPS + KPLCKSLASNRVLFYEDELCQAVAQNKLR Sbjct: 159 RSRQEMLRITTPRPTEHWPFVNKGDGKGFSLPSPHTPKAPRHGPRPPSRLKVSEMRQVAAVLFQESAFPPRCMVPSVISKPLCKSLASNRVLFYEDELCQAVAQNKLR 266
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: I1MN22_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 189.889 bits (481), Expect = 5.484e-56 Identity = 86/108 (79.63%), Postives = 99/108 (91.67%), Query Frame = 2 Query: 2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325 RSRQE+LSTMTPRPT+HWPF KG+GKG+ + SPHTPKAPRHGPRPPSR+K++E+RQ+ AVLF +SAFPS C+VPS + KPLCKSLASNRVLFYEDELCQAVAQNKLR Sbjct: 177 RSRQEMLSTMTPRPTEHWPFLCKGDGKGVRIPSPHTPKAPRHGPRPPSRLKISEMRQVTAVLFPESAFPSHCLVPSVISKPLCKSLASNRVLFYEDELCQAVAQNKLR 284
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: A0A059AIG9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02473 PE=4 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 2.020e-55 Identity = 87/108 (80.56%), Postives = 98/108 (90.74%), Query Frame = 2 Query: 2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325 RSRQE+L TMTPRPT+HWPF +G+GKG+ + SPHTPKAPRHGPRPPSR+K+ E+RQIAAVLFQ+S FPSRCMVPS L KPLCKSLASNR LFYE+ELCQAVAQNKLR Sbjct: 159 RSRQEMLRTMTPRPTEHWPF-KRGDGKGVFMPSPHTPKAPRHGPRPPSRIKLAEMRQIAAVLFQESTFPSRCMVPSVLTKPLCKSLASNRALFYEEELCQAVAQNKLR 265
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: A0A0B2NTI9_GLYSO (F-box protein OS=Glycine soja GN=glysoja_000124 PE=4 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 1.121e-52 Identity = 82/108 (75.93%), Postives = 95/108 (87.96%), Query Frame = 2 Query: 2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325 RSRQE+LST TP PT+HWPF KG+GKGI + SPHTPKAPRHG RP SR+K++E++Q+ AVLF +S FPS C+VPS +PKPLCKSLASNRVLFYEDELCQAVAQNKLR Sbjct: 14 RSRQEMLSTTTPCPTEHWPFLCKGDGKGIRIPSPHTPKAPRHGLRPSSRLKISEMQQVTAVLFPESTFPSHCLVPSVIPKPLCKSLASNRVLFYEDELCQAVAQNKLR 121
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: K7K6G6_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 7.607e-51 Identity = 82/108 (75.93%), Postives = 95/108 (87.96%), Query Frame = 2 Query: 2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325 RSRQE+LST TP PT+HWPF KG+GKGI + SPHTPKAPRHG RP SR+K++E++Q+ AVLF +S FPS C+VPS +PKPLCKSLASNRVLFYEDELCQAVAQNKLR Sbjct: 179 RSRQEMLSTTTPCPTEHWPFLCKGDGKGIRIPSPHTPKAPRHGLRPSSRLKISEMQQVTAVLFPESTFPSHCLVPSVIPKPLCKSLASNRVLFYEDELCQAVAQNKLR 286
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy Swiss-Prot
Match: FB248_ARATH (F-box protein At4g35930 OS=Arabidopsis thaliana GN=At4g35930 PE=2 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 2.905e-37 Identity = 71/111 (63.96%), Postives = 83/111 (74.77%), Query Frame = 2 Query: 2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSA-FPSRCMVPSTLPKP-LCKSLASN--RVLFYEDELCQAVAQNKL 322 RSRQE+L MTP P + WPF +G+G M+ SPHTPKAP+H PRPPSR K+ E++QI AVLFQD FPSRC+VPS L +P L K +A RVLFYEDELCQAVAQN L Sbjct: 211 RSRQEMLRVMTPVPINRWPF-RRGDGNPTMVSSPHTPKAPKHAPRPPSRTKLAEMKQITAVLFQDQTPFPSRCIVPSVLQRPTLFKPMAPKHPRVLFYEDELCQAVAQNNL 320 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0014722 ID=g.arboreum_cottongen_reftransV1_0014722; Name=g.arboreum_cottongen_reftransV1_0014722; organism=Gossypium arboreum; type=contig; length=568bpback to top |