g.arboreum_cottongen_reftransV1_0011163, g.arboreum_cottongen_reftransV1_0011163 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0011163
Unique Nameg.arboreum_cottongen_reftransV1_0011163
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1146
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr9chromosomeg.arboreum_cottongen_reftransV1_0011163:1..1146 .
Chr9:69996171..69997841 -
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: A0A0B0MU63_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_26668 PE=4 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.760e-24
Identity = 59/155 (38.06%), Postives = 79/155 (50.97%), Query Frame = -3 
Query:  452 WRGEASREYFVRSGYKILLQRNENYRQKEINTCYKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLEFTRPQTLSQVEFMEWFTWIMLHSTREVSQTFICALWAIWSAKNKWMYENHRR 916
            WRGE++ EY VRSGYK L    +N  Q      YK+LW+ +LPSKI IT WR + N++    NL  KRL+  A C+RC  G ETREH+FRDC   K++                                     CALWAIW+ +N++++E   R
Sbjct:   38 WRGESTGEYSVRSGYKYL-HEGQNQLQINYKQFYKRLWNLELPSKIKITIWRCSRNYLPNYSNLHYKRLMGLATCRRCHTGAETREHLFRDCPVAKEM----------------------------------MITCALWAIWANRNRFLHEGESR 157
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: F4NCI7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 2.920e-16
Identity = 46/181 (25.41%), Postives = 80/181 (44.20%), Query Frame = -3 
Query:  461 FSEEVAQKILLIPLAQHTHEHFLSWRGEASREYFVRSGY---KILLQRNENYRQKEINT-CYKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLEFTRPQTLSQV-EFMEWFTWIMLHSTREVSQTFICALWAIWSAKNKWMYEN 988
            F EE  + +L IPL++   +    W    +  + VRS Y   ++   R    +  E  T  ++++W    P K++   WR     +     L ++ +  +A C  C    E+  H   DCT  + IW+   F      + +  F E   W+  H+T+E  +T    +WA W  +NK ++EN
Sbjct:  984 FVEEEWELVLSIPLSRFLPDDHRYWWPSRNGIFSVRSCYWLGRLGPVRTWQLQHGERETELWRRVWQLQGPPKLSHFLWRACKGSLAVKGRLFSRHISVDATCSVCGDPDESINHALFDCTFARAIWQVSGFASLMMNAPLSSFSERLEWLAKHATKEEFRTMCSFMWAGWFCRNKLIFEN 1164

HSP 2 Score: 45.0542 bits (105), Expect = 2.920e-16
Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = -2 
Query: 1008 FLSSEL-----GSLPSYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWV 1145
            F SSEL     G  PS+TW+ IW SK LL+  L+W VG+ + I++ ED W+
Sbjct:  893 FKSSELLEARRGYNPSFTWRSIWGSKSLLLEGLKWCVGSGERIRVWEDAWI 943

HSP 3 Score: 28.4906 bits (62), Expect = 2.920e-16
Identity = 10/16 (62.50%), Postives = 11/16 (68.75%), Query Frame = -2 
Query:  384 LWRPPKKDFFKINFDA 431
            LW PP    FK+NFDA
Sbjct: 1203 LWSPPPTGMFKVNFDA 1218
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: Q7X970_ORYSJ (BZIP-like protein OS=Oryza sativa subsp. japonica PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-15
Identity = 46/183 (25.14%), Postives = 83/183 (45.36%), Query Frame = -3 
Query:  449 AQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKILLQ-----RNENYRQKEINTCYKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLEFTRPQTLSQVEFMEWFTWIM--LHSTREVSQT-FICALWAIWSAKNKWMYENHRRP 973
            A+ IL I ++  + E F++W  + +  + VRS Y++  Q      + +     IN  ++ +W C +P K+ I AWRV  N + T+VN K ++L    +CQ C +  E   H    C    ++W  +  +   ++     +    W+   L    E  Q  F+  LW  W  +N+ ++     P
Sbjct: 1718 AEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVASNCLATMVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQASQLWSCMHKSGSVSVDIKASVLGRFWLFDCLEKIPEYEQAMFLMTLWRNWYVRNELIHGKSAPP 1900

HSP 2 Score: 33.8834 bits (76), Expect = 5.423e-15
Identity = 19/52 (36.54%), Postives = 26/52 (50.00%), Query Frame = -2 
Query:  990 FLSSELGSLPSYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWVPNVESR 1145
             + +  GS  S  W+ I     LL   + W+VGN  SI+I  D W+P   SR
Sbjct: 1629 LIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSIRIWRDSWLPRDHSR 1680
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: Q2QXH7_ORYSJ (Os12g0156200 protein OS=Oryza sativa subsp. japonica GN=LOC_Os12g06010 PE=4 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.639e-15
Identity = 46/183 (25.14%), Postives = 83/183 (45.36%), Query Frame = -3 
Query:  449 AQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKILLQ-----RNENYRQKEINTCYKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLEFTRPQTLSQVEFMEWFTWIM--LHSTREVSQT-FICALWAIWSAKNKWMYENHRRP 973
            A+ IL I ++  + E F++W  + +  + VRS Y++  Q      + +     IN  ++ +W C +P K+ I AWRV  N + T+VN K ++L    +CQ C +  E   H    C    ++W  +  +   ++     +    W+   L    E  Q  F+  LW  W  +N+ ++     P
Sbjct: 1115 AEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVASNCLATMVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQASQLWSCMHKSGSVSVDIKASVLGRFWLFDCLEKIPEYEQAMFLMTLWRNWYVRNELIHGKSAPP 1297

HSP 2 Score: 33.8834 bits (76), Expect = 6.639e-15
Identity = 19/52 (36.54%), Postives = 26/52 (50.00%), Query Frame = -2 
Query:  990 FLSSELGSLPSYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWVPNVESR 1145
             + +  GS  S  W+ I     LL   + W+VGN  SI+I  D W+P   SR
Sbjct: 1026 LIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSIRIWRDSWLPRDHSR 1077
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: Q7XCU0_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os10g37170 PE=4 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.904e-15
Identity = 53/192 (27.60%), Postives = 80/192 (41.67%), Query Frame = -3 
Query:  461 FSEEVAQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKILLQRNENYRQKEINTC-------------YKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLEFTRPQTLSQVEFMEWFTWIMLHSTREVSQT---FICALWAIWSAKNKWMYEN 988
            F  ++A++IL IP+++H    F SW  +    Y VRS Y   L R+E +   + N+              +K LW  + P K+ IT WR     + T   L+ + + +   C  C +  +T EHVF  C    +IWE ++      L +  F     WI     R  S          W IW A+N     N
Sbjct:  952 FPVDIAKEILQIPISRHGDADFASWPHDKLGLYSVRSAYN--LARSEAFFADQSNSGRGMASRLLESQKDWKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPSTDGCVFCNRD-DTVEHVFLFCPFAAQIWEEIKGKCAVKLGRNGFSTMRQWIFDFLKRGSSHANTLLAVTFWHIWEARNNTKNNN 1140

HSP 2 Score: 38.5058 bits (88), Expect = 6.904e-15
Identity = 16/45 (35.56%), Postives = 28/45 (62.22%), Query Frame = -2 
Query:  984 PSYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWVPNVESRLL 1118
            PS+TW+ +   + LL   ++W VG+ ++IKI  D W+P    +L+
Sbjct:  876 PSFTWRSLLFGRELLAKGVRWGVGDGKTIKIFSDNWIPGFRPQLV 920

HSP 3 Score: 20.4014 bits (41), Expect = 6.904e-15
Identity = 8/16 (50.00%), Postives = 10/16 (62.50%), Query Frame = -2 
Query:  381 WRPPKKDFFKINFDAA 428
            W+PP    + IN DAA
Sbjct: 1181 WQPPPASVWMINSDAA 1196
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: Q9FW98_ORYSJ (Putative non-LTR retroelement reverse transcriptase OS=Oryza sativa subsp. japonica GN=OSJNBa0026L12.31 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.295e-14
Identity = 52/186 (27.96%), Postives = 79/186 (42.47%), Query Frame = -3 
Query:  479 FSEEVAQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKILLQRNENYRQKEINTC-------------YKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLEFTRPQTLSQVEFMEWFTWIMLHSTREVSQT---FICALWAIWSAKN 988
            F  ++A++IL IP+++H    F SW  +    Y VRS Y   L R+E +   + N+              +K LW  + P K+ IT WR     + T   L+ + + +   C  C +  +T EHVF  C    +IWE ++      L +  F     WI     R  S          W IW A+N
Sbjct:  995 FPVDIAKEILQIPISRHGDADFASWPHDKLGLYSVRSAYN--LARSEAFFADQSNSGRGMASRLLESQKDWKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPSTDGCVFCNRD-DTVEHVFLFCPFAAQIWEEIKGKCAVKLGRNGFSTMRQWIFDFLKRGSSHANTLLAVTFWHIWEARN 1177

HSP 2 Score: 38.5058 bits (88), Expect = 1.295e-14
Identity = 16/45 (35.56%), Postives = 28/45 (62.22%), Query Frame = -2 
Query:  984 PSYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWVPNVESRLL 1118
            PS+TW+ +   + LL   ++W VG+ ++IKI  D W+P    +L+
Sbjct:  919 PSFTWRSLLFGRELLAKGVRWGVGDGKTIKIFSDNWIPGFRPQLV 963
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: Q94HY0_ORYSJ (Putative reverse transcriptase OS=Oryza sativa subsp. japonica GN=OSJNBa0076F20.17 PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.125e-14
Identity = 46/183 (25.14%), Postives = 83/183 (45.36%), Query Frame = -3 
Query:  449 AQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKILLQ-----RNENYRQKEINTCYKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLEFTRPQTLSQVEFMEWFTWIM--LHSTREVSQT-FICALWAIWSAKNKWMYENHRRP 973
            A+ IL I ++  + E F++W  + +  + VRS Y++  Q      + +     IN  ++ +W C +P K+ I AWRV  N + T+VN K ++L    +CQ C +  E   H    C    ++W  +  +   ++     +    W+   L    E  Q  F+  LW  W  +N+ ++     P
Sbjct:  394 AEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVASNCLATMVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQASQLWSCMHKSGSVSVDIKASVLGRFWLFDCLEKIPEYEQAMFLMTLWRNWYVRNELIHGKSAPP 576

HSP 2 Score: 33.8834 bits (76), Expect = 4.125e-14
Identity = 19/52 (36.54%), Postives = 26/52 (50.00%), Query Frame = -2 
Query:  990 FLSSELGSLPSYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWVPNVESR 1145
             + +  GS  S  W+ I     LL   + W+VGN  SI+I  D W+P   SR
Sbjct:  305 LIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSIRIWRDPWLPRDHSR 356
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: B9FQ15_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_22054 PE=4 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.472e-14
Identity = 54/208 (25.96%), Postives = 96/208 (46.15%), Query Frame = -3 
Query:  407 FSEEVAQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKI------LLQRNENYRQ-----KEINTCYKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLE--FTRPQTLSQVEFMEWFTWIMLHSTREVSQTFICA-LWAIWSAKNKWMYENHRRP*GWNPSYGGPRKKI 988
            F E  AQ+IL IP++ H  E F+SW  +    + VRS Y +      +  ++EN R      +E    +K+LW  + P K+    WR+  + + +   L+ + +     C  C +  +  EH+F  C     IW++++  F     ++ +  M+ + +  L  +  + +T +   LW IW A+      NH R    NP+   PR+ I
Sbjct:  553 FDETTAQQILQIPVSAHGGEDFISWPHDKRGVFSVRSAYNLARSEIFMAAQSENGRGMLSGLQESANRWKELWRINAPGKMLTNLWRIVHDCLPSGFQLRRRHIPATDGCCFCERD-DRIEHIFLLCPFAVCIWDSIKQHFDLKLCMTDLSNMKQWVFDFLGRSSNIQKTALAVTLWHIWEAR------NHSRN---NPTLANPRQVI 750

HSP 2 Score: 38.891 bits (89), Expect = 5.472e-14
Identity = 15/44 (34.09%), Postives = 28/44 (63.64%), Query Frame = -2 
Query:  984 SYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWVPNVESRLL 1115
            S+TW+ I   + LL   ++W +GN  S+KI +D W+P ++  ++
Sbjct:  478 SFTWRSILFGRDLLRKGVRWGIGNGSSVKILKDHWIPGIKPSMV 521
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: S8CW68_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_05560 PE=4 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 6.190e-14
Identity = 47/180 (26.11%), Postives = 77/180 (42.78%), Query Frame = -3 
Query:  491 RVGFSEEVAQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKILLQRNENYRQKEINTCYKK------LWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLEFTRPQTLSQVEFMEWFTWIM-----LHSTREVSQTFICALWAIW 997
            R  FS      IL IPLA++ +   L W      EY V++GY++L   +E        +   K      LW   LP +I    WR   + +    +L  +R+  +  C  C +  ET  H F  C+ ++ +W    F+    ++ +E +    WI+     LH+  E     +  LW+IW
Sbjct:   94 RQTFSSSDVHCILAIPLAKNPYPDRLIWHFTRQGEYSVKTGYQLLKSTSEMNSPGSSRSNANKILMWQALWKLKLPMRILTFNWRFGKHILPLKDSLVRRRIGTDPTCSACEEDRETWFHAFISCSFSQAVWRLGGFS--MDMAGLESLHPGDWILSRFHQLHT--EQFAGLLVTLWSIW 269

HSP 2 Score: 45.4394 bits (106), Expect = 6.190e-14
Identity = 18/49 (36.73%), Postives = 31/49 (63.27%), Query Frame = -2 
Query:  999 FLSSELGSLPSYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWVPNV 1145
            FL + LG  PSY W+ I + + +L   L+W++G+  SI + +D W+P+ 
Sbjct:   11 FLQAPLGRSPSYAWRSIHSCRDVLTGGLRWRIGDGSSIDVWKDPWIPDT 59
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: A5B0T8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024672 PE=4 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 6.440e-14
Identity = 39/131 (29.77%), Postives = 58/131 (44.27%), Query Frame = -3 
Query:  617 RVGFSEEVAQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKIL--LQRNENYRQKEINTCY--KKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWE 997
            R  F    A  IL IPL   + E  +SW  +A  EY  RSGY  L   +++      ++++ +   +LW    P KI   AWR   N + T   L  + +     C  C    ET  H   +C AT+ +W+
Sbjct: 1174 RDKFMARDADLILYIPLPMSSREDQISWSFDARGEYTARSGYGALRCFRQSAALVASDVDSNFVWAQLWKVTTPPKILNFAWRAARNCLPTRFALTIRHVDTPMCCPICRSEPETTLHALVECVATRDVWD 1304

HSP 2 Score: 43.8986 bits (102), Expect = 6.440e-14
Identity = 20/54 (37.04%), Postives = 34/54 (62.96%), Query Frame = -2 
Query:  984 FLSSELGSLPSYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWVPNVESRLL 1145
            FL++ELGS PSY W+ I A++ LL     W + +   +++  D W+P+  +RL+
Sbjct: 1093 FLNAELGSNPSYMWRSILAAQDLLKRGYYWSIASGTKVQVWGDSWLPDNSNRLI 1146
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0MU63_GOSAR4.760e-2438.06Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
F4NCI7_BETVU2.920e-1625.41Uncharacterized protein OS=Beta vulgaris subsp. vu... [more]
Q7X970_ORYSJ5.423e-1525.14BZIP-like protein OS=Oryza sativa subsp. japonica ... [more]
Q2QXH7_ORYSJ6.639e-1525.14Os12g0156200 protein OS=Oryza sativa subsp. japoni... [more]
Q7XCU0_ORYSJ6.904e-1527.60Retrotransposon protein, putative, unclassified OS... [more]
Q9FW98_ORYSJ1.295e-1427.96Putative non-LTR retroelement reverse transcriptas... [more]
Q94HY0_ORYSJ4.125e-1425.14Putative reverse transcriptase OS=Oryza sativa sub... [more]
B9FQ15_ORYSJ5.472e-1425.96Putative uncharacterized protein OS=Oryza sativa s... [more]
S8CW68_9LAMI6.190e-1426.11Uncharacterized protein (Fragment) OS=Genlisea aur... [more]
A5B0T8_VITVI6.440e-1429.77Putative uncharacterized protein OS=Vitis vinifera... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 61..151
e-value: 5.6E-16
score: 59.0
NoneNo IPR availablePANTHERPTHR25952:SF189COPPER ION BINDING / ELECTRON CARRIER PROTEINcoord: 50..207
NoneNo IPR availablePANTHERPTHR25952FAMILY NOT NAMEDcoord: 50..207

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0011163 ID=g.arboreum_cottongen_reftransV1_0011163; Name=g.arboreum_cottongen_reftransV1_0011163; organism=Gossypium arboreum; type=contig; length=1146bp
AGTGTCGACATCATTTTGCCCAATCAAAAAGATCTGATTTCTTCCCGTCA
TTTCGTCTGCCCTTGCTTAGTAAAGACGTTTTCAGATTTCCGATGAAAAG
ATTTTACCTTCCCAGCTGTTAGTCTTCTTCCTTTGATCTTTTCTTTTCCA
TCGTTGCCTTCTTCTATTTGCAGCCTGTCTTCCACTCATTTTCCTCTTCT
AAAGATTTTTGTACAGCCATGTATTTTCCTGCTCGATAGATCGTCTTCTC
CTCTTTTGTCCCCGCAACTGGTGTTGTTATTATTTCCAATTAGATTATTT
CCATCTCTGATCTACCTCTGCTTCAGTAATACCATTTCCGTCGGACCCAG
GAGCAAGGATCTGTTCTGTCTGTTATCAAAGGCAGCATCGAAGTTTATCT
TGAAGAAATCTTTTTTCGGGGGCCTCCATAACTCGGATTCCAACCTTAAG
GTCTCCTGTGGTTTTCATACATCCATTTGTTTTTAGCTGACCAGATAGCC
CATAAAGCGCAGATGAAGGTCTGACTAACTTCTCTTGTACTGTGGAGCAT
GATCCAGGTAAACCATTCCATAAACTCTACTTGTGAAAGAGTCTGAGGCC
GTGTAAACTCTAAGTTTTCCCATATTTTTTTTGTGGCAGTGCAATCCCGG
AAGACGTGTTCTCTTGTTTCCAGCCCTTGCAAGCACCTCTGACAAATGGC
CTCATTTATTAGTCGCTTAGCTTTTAGGTTTACTAGAGTAAGGATAAAGT
TAAGGGTGACTCTCCAGGCTGTAATATTAATTTTTGAAGGGAGGTCACAG
CTCCAGAGTTTTTTGTAACATGTATTAATTTCCTTTTGCCTATAATTTTC
ATTTCTTTGTAATAGGATTTTGTAACCGCTGCGCACAAAATACTCTCTAG
ATGCCTCGCCTCGCCAACTCAGAAAGTGTTCGTGAGTGTGCTGAGCCAGT
GGAATTAACAAGATCTTTTGAGCCACCTCTTCAGAGAAGCCGACTCTCCA
CATTTGGAACCCAGAAATCTTCCTCAATTTTGATACTTTGCCTATTACCC
ACTTTCCACTGTAATCTTGCAATCAGCAGTCCCTTTGAAGCCCATATACC
TTTCCAAGTATATGATGGTAAGCTCCCTAACTCTGAGCTTAAAAAA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR026960RVT-Znf