g.arboreum_cottongen_reftransV1_0021772, g.arboreum_cottongen_reftransV1_0021772 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0021772
Unique Nameg.arboreum_cottongen_reftransV1_0021772
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length424
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr2chromosomeg.arboreum_cottongen_reftransV1_0021772:1..424 .
Chr2:20983972..20984395 -
Homology
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0021772 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of g.arboreum_cottongen_reftransV1_0021772 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..128
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 15..23

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0021772 ID=g.arboreum_cottongen_reftransV1_0021772; Name=g.arboreum_cottongen_reftransV1_0021772; organism=Gossypium arboreum; type=contig; length=424bp
GAGGAGGAGGAGGAGGGCGTTTTGGTGGGCGTGATTTCAGAAGGGAGGGT
TCAGTTGGTAGGAACCTAGATCACTACGGCGGAGGTAATAGTGGCACTGC
ATATGGATTTCCCGGGAATTATGGCGGAGGAGGATATGCTCCGGGAATGA
CAAGTGCTTGGGATTAGATCCCACTTTATACTGGACTATATATTTTGTAT
TTCGCTGAGTATTTATATTTTTCGTCAGATGTTCAAGGATCAATCTCTGT
TTTTCAGTATTTAGCATTTGCATCAATCTGGGTTCTAACATAGGGGGTTG
TGTAGAGGGCTGTAGGCTGGTGACATAGGAAACTGACCATTTAGCCTGTC
CACTGATCACTGATATATAGAAAATTAACCACTTCGGCTTGGGTCCTTTT
GGCACCATATATATCCTAGCCAGA
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