g.arboreum_cottongen_reftransV1_0020932, g.arboreum_cottongen_reftransV1_0020932 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0020932
Unique Nameg.arboreum_cottongen_reftransV1_0020932
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1714
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr2chromosomeg.arboreum_cottongen_reftransV1_0020932:1..1714 .
Chr2:58726236..58732555 -		n/a
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020932 vs. ExPASy TrEMBL
Match: A0A0D2M6D2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G058300 PE=4 SV=1)

HSP 1 Score: 705.286 bits (1819), Expect = 0.000e+0
Identity = 355/363 (97.80%), Postives = 357/363 (98.35%), Query Frame = 2 
Query:  353 MSDSKTSQGGGAGKTQTRNLPSWMSSRENESKSHGNKSNDAKGHDKGHASSSNNTNFSKLLEGVVFALSGFVNPERSTLRSQALAMGAEYQPDWNSNCTLLACAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLMHAGKPWRRSSISHETSQEKQGSSLTKSYKKVEETQSKTTSGPSKNKASQLAQDRFSPPKVKKWVMDDFNETISWLXXXXXXXXXXXXXXVAGEGILTCLQDAIDCLAQKQDVQQITEQWSFIPRVVKELAIFDASNHGSLTKEDLLREAKVCKQIYEDELSRINSGSLKRKRPKTDGGEEGNKGETKAIFASGYDSDETIKMTEEEIELAYKNFNSGTL 1441
            MSDSKTSQGGGAGKTQTRNLPSWMSSRENESKSHGNKSNDAKGHDKGHASSSNNTNFSKLLEGVVF LSGFVNPERSTLRSQALAMGAEY PDWNSNCTLL CAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLMHAGKPWRRSSISHETS+EKQGSSLTKSYKKVEETQSKTTSGPSKNK SQLAQDRFSPPKVKKWVMDDFNETISWLESQEEKPEPQEIKQVAGEGILTCLQDAIDCLAQKQDVQQITEQWSFIPRVVKELAIFD SNHGSLTKEDLLREAKVCKQIYEDELSRINSGSLKRKRPKTDGGEEGNK ETKAIFASGYDSDETIKMTEEEIELAYKNF+SGTL
Sbjct:    1 MSDSKTSQGGGAGKTQTRNLPSWMSSRENESKSHGNKSNDAKGHDKGHASSSNNTNFSKLLEGVVFVLSGFVNPERSTLRSQALAMGAEYLPDWNSNCTLLVCAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLMHAGKPWRRSSISHETSEEKQGSSLTKSYKKVEETQSKTTSGPSKNKVSQLAQDRFSPPKVKKWVMDDFNETISWLESQEEKPEPQEIKQVAGEGILTCLQDAIDCLAQKQDVQQITEQWSFIPRVVKELAIFDGSNHGSLTKEDLLREAKVCKQIYEDELSRINSGSLKRKRPKTDGGEEGNKVETKAIFASGYDSDETIKMTEEEIELAYKNFSSGTL 363
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020932 vs. ExPASy TrEMBL
Match: A0A0D2R0A0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G058300 PE=4 SV=1)

HSP 1 Score: 699.893 bits (1805), Expect = 0.000e+0
Identity = 355/367 (96.73%), Postives = 357/367 (97.28%), Query Frame = 2 
Query:  353 MSDSKTSQGGGAGKTQTRNLPSWMSSRENESKSHGNKSNDAKGHDKGHASSSNNTNFSKLLEGVVFALSGFVNPERSTLRSQALAMGAEYQPDWNSNCTLLACAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLMHAGKPWRRSSISHETSQ----EKQGSSLTKSYKKVEETQSKTTSGPSKNKASQLAQDRFSPPKVKKWVMDDFNETISWLXXXXXXXXXXXXXXVAGEGILTCLQDAIDCLAQKQDVQQITEQWSFIPRVVKELAIFDASNHGSLTKEDLLREAKVCKQIYEDELSRINSGSLKRKRPKTDGGEEGNKGETKAIFASGYDSDETIKMTEEEIELAYKNFNSGTL 1441
            MSDSKTSQGGGAGKTQTRNLPSWMSSRENESKSHGNKSNDAKGHDKGHASSSNNTNFSKLLEGVVF LSGFVNPERSTLRSQALAMGAEY PDWNSNCTLL CAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLMHAGKPWRRSSISHETS+    EKQGSSLTKSYKKVEETQSKTTSGPSKNK SQLAQDRFSPPKVKKWVMDDFNETISWLESQEEKPEPQEIKQVAGEGILTCLQDAIDCLAQKQDVQQITEQWSFIPRVVKELAIFD SNHGSLTKEDLLREAKVCKQIYEDELSRINSGSLKRKRPKTDGGEEGNK ETKAIFASGYDSDETIKMTEEEIELAYKNF+SGTL
Sbjct:    1 MSDSKTSQGGGAGKTQTRNLPSWMSSRENESKSHGNKSNDAKGHDKGHASSSNNTNFSKLLEGVVFVLSGFVNPERSTLRSQALAMGAEYLPDWNSNCTLLVCAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLMHAGKPWRRSSISHETSEGVLAEKQGSSLTKSYKKVEETQSKTTSGPSKNKVSQLAQDRFSPPKVKKWVMDDFNETISWLESQEEKPEPQEIKQVAGEGILTCLQDAIDCLAQKQDVQQITEQWSFIPRVVKELAIFDGSNHGSLTKEDLLREAKVCKQIYEDELSRINSGSLKRKRPKTDGGEEGNKVETKAIFASGYDSDETIKMTEEEIELAYKNFSSGTL 367
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020932 vs. ExPASy TrEMBL
Match: A0A0B0P694_GOSAR (DNA repair XRCC1 OS=Gossypium arboreum GN=F383_23930 PE=4 SV=1)

HSP 1 Score: 680.248 bits (1754), Expect = 0.000e+0
Identity = 345/367 (94.01%), Postives = 345/367 (94.01%), Query Frame = 2 
Query:  353 MSDSKTSQGGGAGKTQTRNLPSWMSSRENESKSHGNKSNDAKGHDKGHASSSNNTNFSKLLEGVVFALSGFVNPERSTLRSQALAMGAEYQPDWNSNCTLLACAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLMHAGKPWRRSSISHETSQ----EKQGSSLTKSYKKVEETQSKTTSGPSKNKASQLAQDRFSPPKVKKWVMDDFNETISWLXXXXXXXXXXXXXXVAGEGILTCLQDAIDCLAQKQDVQQITEQWSFIPRVVKELAIFDASNHGSLTKEDLLREAKVCKQIYEDELSRINSGSLKRKRPKTDGGEEGNKGETKAIFASGYDSDETIKMTEEEIELAYKNFNSGTL 1441
            MSDSKTSQGGGAGKTQTRNLPSWMSSRENESKSHGNKSNDAKGHDKGHASSSNNTNFSKLLEGVVFALSGFVNPERSTLRSQALAMGAEYQPDWNSNCTLLACAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLMHAGKPWRRSSISHETSQ    EKQGSSLTKSYKKVEETQSKTTSGPSKNKASQLAQDRFSPPKVKKW                  PEPQEIKQVAGEGILTCLQDAIDCLAQKQDVQQITEQWSFIPRVVKELAIFDASNHGSLTKEDLLREAKVCKQIYEDELSRINSGSLKRKRPKTDGGEEGNKGETKAIFASGYDSDETIKMTEEEIELAYKNFNSGTL
Sbjct:    1 MSDSKTSQGGGAGKTQTRNLPSWMSSRENESKSHGNKSNDAKGHDKGHASSSNNTNFSKLLEGVVFALSGFVNPERSTLRSQALAMGAEYQPDWNSNCTLLACAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLMHAGKPWRRSSISHETSQGVLAEKQGSSLTKSYKKVEETQSKTTSGPSKNKASQLAQDRFSPPKVKKW------------------PEPQEIKQVAGEGILTCLQDAIDCLAQKQDVQQITEQWSFIPRVVKELAIFDASNHGSLTKEDLLREAKVCKQIYEDELSRINSGSLKRKRPKTDGGEEGNKGETKAIFASGYDSDETIKMTEEEIELAYKNFNSGTL 349
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020932 vs. ExPASy TrEMBL
Match: A0A0D2Q7I1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G058300 PE=4 SV=1)

HSP 1 Score: 669.848 bits (1727), Expect = 0.000e+0
Identity = 337/363 (92.84%), Postives = 339/363 (93.39%), Query Frame = 2 
Query:  353 MSDSKTSQGGGAGKTQTRNLPSWMSSRENESKSHGNKSNDAKGHDKGHASSSNNTNFSKLLEGVVFALSGFVNPERSTLRSQALAMGAEYQPDWNSNCTLLACAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLMHAGKPWRRSSISHETSQEKQGSSLTKSYKKVEETQSKTTSGPSKNKASQLAQDRFSPPKVKKWVMDDFNETISWLXXXXXXXXXXXXXXVAGEGILTCLQDAIDCLAQKQDVQQITEQWSFIPRVVKELAIFDASNHGSLTKEDLLREAKVCKQIYEDELSRINSGSLKRKRPKTDGGEEGNKGETKAIFASGYDSDETIKMTEEEIELAYKNFNSGTL 1441
            MSDSKTSQGGGAGKTQTRNLPSWMSSRENESKSHGNKSNDAKGHDKGHASSSNNTNFSKLLEGVVF LSGFVNPERSTLRSQALAMGAEY PDWNSNCTLL CAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLMHAGKPWRRSSISHETS+EKQGSSLTKSYKKVEETQSKTTSGPSKNK SQLAQDRFSPPKVKKW                  PEPQEIKQVAGEGILTCLQDAIDCLAQKQDVQQITEQWSFIPRVVKELAIFD SNHGSLTKEDLLREAKVCKQIYEDELSRINSGSLKRKRPKTDGGEEGNK ETKAIFASGYDSDETIKMTEEEIELAYKNF+SGTL
Sbjct:    1 MSDSKTSQGGGAGKTQTRNLPSWMSSRENESKSHGNKSNDAKGHDKGHASSSNNTNFSKLLEGVVFVLSGFVNPERSTLRSQALAMGAEYLPDWNSNCTLLVCAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLMHAGKPWRRSSISHETSEEKQGSSLTKSYKKVEETQSKTTSGPSKNKVSQLAQDRFSPPKVKKW------------------PEPQEIKQVAGEGILTCLQDAIDCLAQKQDVQQITEQWSFIPRVVKELAIFDGSNHGSLTKEDLLREAKVCKQIYEDELSRINSGSLKRKRPKTDGGEEGNKVETKAIFASGYDSDETIKMTEEEIELAYKNFSSGTL 345
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020932 vs. ExPASy TrEMBL
Match: A0A0D2Q7H7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G058300 PE=4 SV=1)

HSP 1 Score: 628.246 bits (1619), Expect = 0.000e+0
Identity = 312/363 (85.95%), Postives = 317/363 (87.33%), Query Frame = 2 
Query:  353 MSDSKTSQGGGAGKTQTRNLPSWMSSRENESKSHGNKSNDAKGHDKGHASSSNNTNFSKLLEGVVFALSGFVNPERSTLRSQALAMGAEYQPDWNSNCTLLACAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLMHAGKPWRRSSISHETSQEKQGSSLTKSYKKVEETQSKTTSGPSKNKASQLAQDRFSPPKVKKWVMDDFNETISWLXXXXXXXXXXXXXXVAGEGILTCLQDAIDCLAQKQDVQQITEQWSFIPRVVKELAIFDASNHGSLTKEDLLREAKVCKQIYEDELSRINSGSLKRKRPKTDGGEEGNKGETKAIFASGYDSDETIKMTEEEIELAYKNFNSGTL 1441
            MSDSKTSQGGGAGKTQTRNLPSWMSSRENESKSHGNKSNDAKGHDKGHASSSNNTNFSKLLEGVVF LSGFVNPERSTLRSQALAMGAEY PDWNSNCTLL CAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLMHAGKPWRRSSISHETS+EKQGSSLTKSYKKVEETQSKTTSGPSK +  ++ Q                                     VAGEGILTCLQDAIDCLAQKQDVQQITEQWSFIPRVVKELAIFD SNHGSLTKEDLLREAKVCKQIYEDELSRINSGSLKRKRPKTDGGEEGNK ETKAIFASGYDSDETIKMTEEEIELAYKNF+SGTL
Sbjct:    1 MSDSKTSQGGGAGKTQTRNLPSWMSSRENESKSHGNKSNDAKGHDKGHASSSNNTNFSKLLEGVVFVLSGFVNPERSTLRSQALAMGAEYLPDWNSNCTLLVCAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLMHAGKPWRRSSISHETSEEKQGSSLTKSYKKVEETQSKTTSGPSKPEPQEIKQ-------------------------------------VAGEGILTCLQDAIDCLAQKQDVQQITEQWSFIPRVVKELAIFDGSNHGSLTKEDLLREAKVCKQIYEDELSRINSGSLKRKRPKTDGGEEGNKVETKAIFASGYDSDETIKMTEEEIELAYKNFSSGTL 326
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020932 vs. ExPASy TrEMBL
Match: A0A061GI03_THECC (BRCT domain-containing DNA repair protein, putative isoform 2 OS=Theobroma cacao GN=TCM_028612 PE=4 SV=1)

HSP 1 Score: 546.969 bits (1408), Expect = 0.000e+0
Identity = 296/366 (80.87%), Postives = 323/366 (88.25%), Query Frame = 2 
Query:  353 MSDSKTSQGGGAGKTQTRNLPSWMSSRENESKSHGNKSNDAKGHDKGHASSSNNTNFSKLLEGVVFALSGFVNPERSTLRSQALAMGAEYQPDWNSNCTLLACAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLMHAGKPWRRSSISHETSQEKQGSSLTKSYKKVEETQSKTTSGPSKNKASQLAQDRFSPPKVKKWVMDDFNETISWLXXXXXXXXXXXXXXVAGEGILTCLQDAIDCLAQKQDVQQITEQWSFIPRVVKELAIFDASNHGSLTKEDLLREAKVCKQIYEDELSRINS-GSLKRKRPKTDGGEEGNKGETKAIF--ASGYDSDETIKMTEEEIELAYKNFNSGTL 1441
            MSDSKTS+ GG GKTQTRNLPSWMSSRENESKS  NKSND  GH +G    SNNTNFSKL+EGVVF LSGFVNPERSTLRSQALAMGAEYQPDWNSNCTLL CAFQNTPKFRQVEADCGTI+SKEWILECYAQKKLVDIDPYLMHAGKPWRRS+ISHETS+E+QGSS TKSYK+VE++QSK TS P KNKAS  A++ F PP+VKKWV+ DF  TISWLESQEEKPEP EIKQ+AG GILTCLQDAIDCL QKQDV+QITEQWSF+PRVVKELA+F+ S HGSLTKEDLLR+AKVCKQIYEDEL+R++   S K K+PKTDGGEEG K  TKA    A+GYDSDETI+MTEEEI+LAYKNF S TL
Sbjct:    1 MSDSKTSRSGGVGKTQTRNLPSWMSSRENESKS--NKSNDGNGHGEG----SNNTNFSKLMEGVVFVLSGFVNPERSTLRSQALAMGAEYQPDWNSNCTLLVCAFQNTPKFRQVEADCGTIVSKEWILECYAQKKLVDIDPYLMHAGKPWRRSNISHETSEEQQGSSSTKSYKQVEKSQSKRTSSPYKNKASHPAKESFPPPEVKKWVIYDFIGTISWLESQEEKPEPHEIKQIAGAGILTCLQDAIDCLEQKQDVRQITEQWSFVPRVVKELAMFEGSEHGSLTKEDLLRKAKVCKQIYEDELTRLDGDSSSKNKKPKTDGGEEGKKWGTKASSRDATGYDSDETIEMTEEEIDLAYKNFASETL 360
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020932 vs. ExPASy TrEMBL
Match: A0A061GBB5_THECC (BRCT domain-containing DNA repair protein, putative isoform 1 OS=Theobroma cacao GN=TCM_028612 PE=4 SV=1)

HSP 1 Score: 538.11 bits (1385), Expect = 0.000e+0
Identity = 296/376 (78.72%), Postives = 323/376 (85.90%), Query Frame = 2 
Query:  353 MSDSKTSQGGGAGKTQTRNLPSWMSSRENESKSHGNKSNDAKGHDKGHASSSNNTNFSKLLEGVVFALSGFVNPERSTLRSQALAMGAEYQPDWNSNCTLLACAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLMHAGKPWRRSSISHETSQEKQGSSLTKSYKKVEETQSKTTSGPSK----------NKASQLAQDRFSPPKVKKWVMDDFNETISWLXXXXXXXXXXXXXXVAGEGILTCLQDAIDCLAQKQDVQQITEQWSFIPRVVKELAIFDASNHGSLTKEDLLREAKVCKQIYEDELSRINS-GSLKRKRPKTDGGEEGNKGETKAIF--ASGYDSDETIKMTEEEIELAYKNFNSGTL 1441
            MSDSKTS+ GG GKTQTRNLPSWMSSRENESKS  NKSND  GH +G    SNNTNFSKL+EGVVF LSGFVNPERSTLRSQALAMGAEYQPDWNSNCTLL CAFQNTPKFRQVEADCGTI+SKEWILECYAQKKLVDIDPYLMHAGKPWRRS+ISHETS+E+QGSS TKSYK+VE++QSK TS P K          NKAS  A++ F PP+VKKWV+ DF  TISWLESQEEKPEP EIKQ+AG GILTCLQDAIDCL QKQDV+QITEQWSF+PRVVKELA+F+ S HGSLTKEDLLR+AKVCKQIYEDEL+R++   S K K+PKTDGGEEG K  TKA    A+GYDSDETI+MTEEEI+LAYKNF S TL
Sbjct:    1 MSDSKTSRSGGVGKTQTRNLPSWMSSRENESKS--NKSNDGNGHGEG----SNNTNFSKLMEGVVFVLSGFVNPERSTLRSQALAMGAEYQPDWNSNCTLLVCAFQNTPKFRQVEADCGTIVSKEWILECYAQKKLVDIDPYLMHAGKPWRRSNISHETSEEQQGSSSTKSYKQVEKSQSKRTSSPYKVAFDLVIYFQNKASHPAKESFPPPEVKKWVIYDFIGTISWLESQEEKPEPHEIKQIAGAGILTCLQDAIDCLEQKQDVRQITEQWSFVPRVVKELAMFEGSEHGSLTKEDLLRKAKVCKQIYEDELTRLDGDSSSKNKKPKTDGGEEGKKWGTKASSRDATGYDSDETIEMTEEEIDLAYKNFASETL 370
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020932 vs. ExPASy TrEMBL
Match: A0A0D2Q0C3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G058300 PE=4 SV=1)

HSP 1 Score: 488.419 bits (1256), Expect = 4.641e-167
Identity = 249/254 (98.03%), Postives = 250/254 (98.43%), Query Frame = 2 
Query:  353 MSDSKTSQGGGAGKTQTRNLPSWMSSRENESKSHGNKSNDAKGHDKGHASSSNNTNFSKLLEGVVFALSGFVNPERSTLRSQALAMGAEYQPDWNSNCTLLACAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLMHAGKPWRRSSISHETSQEKQGSSLTKSYKKVEETQSKTTSGPSKNKASQLAQDRFSPPKVKKWVMDDFNETISWLXXXXXXXXXXXXXXVAGEGILTCLQDAIDCLAQKQ 1114
            MSDSKTSQGGGAGKTQTRNLPSWMSSRENESKSHGNKSNDAKGHDKGHASSSNNTNFSKLLEGVVF LSGFVNPERSTLRSQALAMGAEY PDWNSNCTLL CAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLMHAGKPWRRSSISHETS+EKQGSSLTKSYKKVEETQSKTTSGPSKNK SQLAQDRFSPPKVKKWVMDDFNETISWLESQEEKPEPQEIKQVAGEGILTCLQDAIDCLAQKQ
Sbjct:    1 MSDSKTSQGGGAGKTQTRNLPSWMSSRENESKSHGNKSNDAKGHDKGHASSSNNTNFSKLLEGVVFVLSGFVNPERSTLRSQALAMGAEYLPDWNSNCTLLVCAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLMHAGKPWRRSSISHETSEEKQGSSLTKSYKKVEETQSKTTSGPSKNKVSQLAQDRFSPPKVKKWVMDDFNETISWLESQEEKPEPQEIKQVAGEGILTCLQDAIDCLAQKQ 254
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020932 vs. ExPASy TrEMBL
Match: A0A0D2M6E3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G058300 PE=4 SV=1)

HSP 1 Score: 482.256 bits (1240), Expect = 1.217e-164
Identity = 249/258 (96.51%), Postives = 250/258 (96.90%), Query Frame = 2 
Query:  353 MSDSKTSQGGGAGKTQTRNLPSWMSSRENESKSHGNKSNDAKGHDKGHASSSNNTNFSKLLEGVVFALSGFVNPERSTLRSQALAMGAEYQPDWNSNCTLLACAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLMHAGKPWRRSSISHETSQ----EKQGSSLTKSYKKVEETQSKTTSGPSKNKASQLAQDRFSPPKVKKWVMDDFNETISWLXXXXXXXXXXXXXXVAGEGILTCLQDAIDCLAQKQ 1114
            MSDSKTSQGGGAGKTQTRNLPSWMSSRENESKSHGNKSNDAKGHDKGHASSSNNTNFSKLLEGVVF LSGFVNPERSTLRSQALAMGAEY PDWNSNCTLL CAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLMHAGKPWRRSSISHETS+    EKQGSSLTKSYKKVEETQSKTTSGPSKNK SQLAQDRFSPPKVKKWVMDDFNETISWLESQEEKPEPQEIKQVAGEGILTCLQDAIDCLAQKQ
Sbjct:    1 MSDSKTSQGGGAGKTQTRNLPSWMSSRENESKSHGNKSNDAKGHDKGHASSSNNTNFSKLLEGVVFVLSGFVNPERSTLRSQALAMGAEYLPDWNSNCTLLVCAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLMHAGKPWRRSSISHETSEGVLAEKQGSSLTKSYKKVEETQSKTTSGPSKNKVSQLAQDRFSPPKVKKWVMDDFNETISWLESQEEKPEPQEIKQVAGEGILTCLQDAIDCLAQKQ 258
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020932 vs. ExPASy TrEMBL
Match: A0A0D2R0A5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G058300 PE=4 SV=1)

HSP 1 Score: 450.284 bits (1157), Expect = 7.644e-153
Identity = 214/219 (97.72%), Postives = 215/219 (98.17%), Query Frame = 2 
Query:  353 MSDSKTSQGGGAGKTQTRNLPSWMSSRENESKSHGNKSNDAKGHDKGHASSSNNTNFSKLLEGVVFALSGFVNPERSTLRSQALAMGAEYQPDWNSNCTLLACAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLMHAGKPWRRSSISHETSQEKQGSSLTKSYKKVEETQSKTTSGPSKNKASQLAQDRFSPPKVKKWVMDDFNETISWL 1009
            MSDSKTSQGGGAGKTQTRNLPSWMSSRENESKSHGNKSNDAKGHDKGHASSSNNTNFSKLLEGVVF LSGFVNPERSTLRSQALAMGAEY PDWNSNCTLL CAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLMHAGKPWRRSSISHETS+EKQGSSLTKSYKKVEETQSKTTSGPSKNK SQLAQDRFSPPKVKKWVMDDFNETISWL
Sbjct:    1 MSDSKTSQGGGAGKTQTRNLPSWMSSRENESKSHGNKSNDAKGHDKGHASSSNNTNFSKLLEGVVFVLSGFVNPERSTLRSQALAMGAEYLPDWNSNCTLLVCAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLMHAGKPWRRSSISHETSEEKQGSSLTKSYKKVEETQSKTTSGPSKNKVSQLAQDRFSPPKVKKWVMDDFNETISWL 219
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020932 vs. ExPASy Swiss-Prot
Match: XRCC1_ARATH (DNA-repair protein XRCC1 OS=Arabidopsis thaliana GN=XRCC1 PE=1 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 4.162e-112
Identity = 206/366 (56.28%), Postives = 255/366 (69.67%), Query Frame = 2 
Query:  395 TQTRNLPSWMSSRENE---SKSHGNKSND-----------AKGHDKGHA-SSSNNTNFSKLLEGVVFALSGFVNPERSTLRSQALAMGAEYQPDWNSNCTLLACAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLMHAGKPWRRSSISHETSQEKQGSSLTKSYKKVE-ETQSK-TTSGPSKNK-ASQLAQDRFSPPKVKKWVMDDFNETISWLXXXXXXXXXXXXXXVAGEGILTCLQDAIDCLAQKQDVQQITEQWSFIPRVVKELAIFDASN---HGSLTKEDLLREAKVCKQIYEDELSRINSGSLKRKRPKTDGGEEGNKGETKAIFASGYDSDETIKMTEEEIELAYKNFN 1429
            +Q RNLPSWMSSR+ E   SKSH  K  D           A  +   HA  SSN T FSKL+EGVVF LSGFVNPERSTLRSQAL MGA YQPDWN+  TLL CAF NTPKFRQVE + GTIISKEWI ECYAQKKLVDI+ YLMHAGKPWR+SS   + ++EK+     K  K+VE +T+++ T S  SKN+ A  L ++ F   +VKKW  DD ++TISWLESQEEKPEP EIK++A EG+LTCLQDAID L QKQD+  +TE WSF+PRVVKEL   ++S+   + + +KE++ ++AK  K+IYE EL++               GE+    E+ +  A GYDSD T++MTEEEIELAY+N +
Sbjct:    2 SQKRNLPSWMSSRDPEITPSKSHCKKPKDEGPTEEHNSRNAPSNKSEHAEPSSNTTEFSKLMEGVVFVLSGFVNPERSTLRSQALTMGATYQPDWNAGSTLLICAFPNTPKFRQVETNGGTIISKEWITECYAQKKLVDIEQYLMHAGKPWRKSSSPQDANREKREHLSKKPEKQVEKKTETRGTPSTSSKNRSACNLVKEPFFVTEVKKWARDDLSQTISWLESQEEKPEPGEIKRIAAEGVLTCLQDAIDSLEQKQDIGSVTELWSFVPRVVKELGKMESSSKKENSTASKEEVCKQAKSWKKIYEAELAK--------------PGED----ESTSRVACGYDSDMTVEMTEEEIELAYRNVS 349
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020932 vs. ExPASy Swiss-Prot
Match: XRCC1_RAT (DNA repair protein XRCC1 OS=Rattus norvegicus GN=Xrcc1 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.337e-21
Identity = 62/171 (36.26%), Postives = 86/171 (50.29%), Query Frame = 2 
Query:  362 SKTSQGGGAGKTQTRNLPSWMSSRENESKSHGNKSNDAKGHDKG---HASSSNNTNFSKLLEGVVFALSGFVNPERSTLRSQALAMGAEYQPDWNSNCTLLACAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLMHA-GKPWRRSSISHETSQEKQGSSLTK 862
            SK S G  A K     +PS   +    + +   K+   K   +G     + +      K+L+GVV  LSGF NP RS LR +AL +GA+Y+PDW  + T L CAF NTPK+ QV    G I+ KEW+L+CY  ++ +    YLM   G        SH  S E +   L +
Sbjct:  261 SKPSAGPPAPKRPKLPVPSRTPA-ATPASTPAQKAVPGKPRGEGTEPRGARAGPQELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTPDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCYRMRRRLPSRRYLMAGLGSSSEDEGDSHSESGEDEAPKLPR 430
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020932 vs. ExPASy Swiss-Prot
Match: XRCC1_MOUSE (DNA repair protein XRCC1 OS=Mus musculus GN=Xrcc1 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.009e-21
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 2 
Query:  521 FSKLLEGVVFALSGFVNPERSTLRSQALAMGAEYQPDWNSNCTLLACAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLM 784
              K+L+GVV  LSGF NP RS LR +AL +GA+Y+PDW  + T L CAF NTPK+ QV    G I+ KEW+L+C+  ++ +    YLM
Sbjct:  316 LGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTPDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCHHMRRRLPSRRYLM 403
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020932 vs. ExPASy Swiss-Prot
Match: XRCC1_HUMAN (DNA repair protein XRCC1 OS=Homo sapiens GN=XRCC1 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.357e-21
Identity = 57/133 (42.86%), Postives = 78/133 (58.65%), Query Frame = 2 
Query:  521 FSKLLEGVVFALSGFVNPERSTLRSQALAMGAEYQPDWNSNCTLLACAFQNTPKFRQVEADCGTIISKEWILECYAQKKLVDIDPYLMHAGKPWRRSSISHETSQEKQGSSLTKSYKKVEETQSKTT--SGPS 913
              K+L+GVV  LSGF NP RS LR +AL +GA+Y+PDW  + T L CAF NTPK+ QV    G I+ KEW+L+C+  ++ +    YLM AG P   S     +     G    K  +K  +T++K T  +GPS
Sbjct:  316 LGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCHRMRRRLPSRRYLM-AG-PGSSSEEDEASHSGGSGDEAPKLPQKQPQTKTKPTQAAGPS 446
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020932 vs. ExPASy Swiss-Prot
Match: XRCC1_CRIGR (DNA repair protein XRCC1 OS=Cricetulus griseus GN=XRCC1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.911e-19
Identity = 41/74 (55.41%), Postives = 52/74 (70.27%), Query Frame = 2 
Query:  521 FSKLLEGVVFALSGFVNPERSTLRSQALAMGAEYQPDWNSNCTLLACAFQNTPKFRQVEADCGTIISKEWILEC 742
              K+L+GVV  LSGF NP RS LR +AL +GA+Y+PDW  + T L CAF NTPK+ QV    G I+ KEW+L+C
Sbjct:  317 LGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTPDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDC 390
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0020932 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2M6D2_GOSRA0.000e+097.80Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2R0A0_GOSRA0.000e+096.73Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0P694_GOSAR0.000e+094.01DNA repair XRCC1 OS=Gossypium arboreum GN=F383_239... [more]
A0A0D2Q7I1_GOSRA0.000e+092.84Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2Q7H7_GOSRA0.000e+085.95Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061GI03_THECC0.000e+080.87BRCT domain-containing DNA repair protein, putativ... [more]
A0A061GBB5_THECC0.000e+078.72BRCT domain-containing DNA repair protein, putativ... [more]
A0A0D2Q0C3_GOSRA4.641e-16798.03Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2M6E3_GOSRA1.217e-16496.51Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2R0A5_GOSRA7.644e-15397.72Uncharacterized protein OS=Gossypium raimondii GN=... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0020932 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
XRCC1_ARATH4.162e-11256.28DNA-repair protein XRCC1 OS=Arabidopsis thaliana G... [more]
XRCC1_RAT1.337e-2136.26DNA repair protein XRCC1 OS=Rattus norvegicus GN=X... [more]
XRCC1_MOUSE3.009e-2150.00DNA repair protein XRCC1 OS=Mus musculus GN=Xrcc1 ... [more]
XRCC1_HUMAN3.357e-2142.86DNA repair protein XRCC1 OS=Homo sapiens GN=XRCC1 ... [more]
XRCC1_CRIGR1.911e-1955.41DNA repair protein XRCC1 OS=Cricetulus griseus GN=... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001357BRCT domainSMARTSM00292BRCT_7coord: 58..134
e-value: 6.0E-8
score: 42.4
IPR001357BRCT domainGENE3D3.40.50.10190coord: 57..145
e-value: 3.2E-19
score: 68.5
IPR001357BRCT domainPFAMPF00533BRCTcoord: 58..130
e-value: 1.0E-7
score: 32.1
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 56..144
score: 16.622
IPR001357BRCT domainSUPERFAMILY52113BRCT domaincoord: 53..146
NoneNo IPR availablePANTHERPTHR11370DNA-REPAIR PROTEIN XRCC1coord: 18..359

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0020932 ID=g.arboreum_cottongen_reftransV1_0020932; Name=g.arboreum_cottongen_reftransV1_0020932; organism=Gossypium arboreum; type=contig; length=1714bp
GGCACAATGGTTGGTTGATAACACAGACATCAAACTTGTAGAGTGAAGGG
CAGGATTCGAACCTGACACATTACTCCGTCAAGTTAAACGCAAGAAACAT
TGGATACAGCAGAGCATTCTCAGCGAGTAGCATATTTAAAATTAGTTTCA
AAGACGAGTATCCCTCGACTCTTGAAGGTCATCCTGTAGCTATTCCTATT
TGAAAATCACAGCAAAGCACAGCCATAACCACCTTTCCAACGCACAAGTC
CCTTCAGGTTTCAATTTCAAACTGAAGAAAAACAGCTTGCTTTCATGGTA
TCAAAAATAATCCAGCTGAATTTATTACAGTTGTTAAGGTGGTCTATTTG
ATATGTCTGATTCAAAAACAAGCCAAGGTGGCGGTGCTGGAAAGACCCAG
ACTCGAAATCTTCCATCATGGATGAGTTCAAGAGAGAATGAAAGTAAATC
CCATGGAAACAAGTCCAATGATGCCAAAGGACATGATAAGGGGCATGCTT
CTAGTTCTAACAACACCAACTTTTCCAAACTTTTGGAAGGGGTGGTCTTT
GCATTGTCAGGATTTGTTAATCCGGAACGTAGTACATTACGTTCCCAGGC
TTTGGCAATGGGAGCTGAATATCAGCCTGACTGGAATTCAAATTGCACGC
TTTTGGCATGTGCTTTTCAAAATACCCCGAAGTTTCGACAAGTTGAAGCT
GATTGTGGAACAATTATATCAAAGGAATGGATATTAGAATGTTATGCACA
GAAAAAGCTTGTCGATATTGATCCTTACCTCATGCATGCTGGGAAACCTT
GGCGAAGAAGTAGCATTTCTCATGAAACTAGTCAAGAAAAACAAGGATCG
TCATTAACAAAATCTTACAAGAAGGTTGAAGAAACACAATCAAAGACAAC
TTCTGGTCCCTCCAAGAATAAAGCATCTCAGCTTGCTCAGGACAGATTTT
CTCCTCCTAAAGTGAAGAAGTGGGTAATGGATGATTTTAATGAAACTATT
TCATGGCTGGAGAGTCAAGAGGAAAAGCCCGAACCGCAGGAGATAAAGCA
AGTAGCTGGAGAAGGGATCTTAACTTGTTTACAAGATGCCATAGATTGTC
TTGCGCAAAAGCAGGATGTGCAGCAAATTACTGAGCAGTGGAGCTTCATC
CCTCGTGTGGTCAAGGAGCTTGCCATCTTCGATGCCAGTAACCATGGCTC
ACTCACCAAGGAAGATCTTTTGAGAGAGGCCAAGGTATGCAAGCAAATAT
ACGAGGATGAATTAAGCCGGATAAACAGTGGTTCTTTGAAAAGAAAAAGG
CCAAAGACTGATGGAGGTGAAGAAGGCAACAAGGGTGAAACCAAAGCCAT
TTTTGCATCAGGTTATGACAGTGATGAAACAATCAAGATGACGGAGGAAG
AAATCGAGCTTGCTTATAAAAATTTCAATTCTGGAACTTTGTAACTTGAG
CTTTATGACGATGGGCTGAAAACACCGGTTTTATGATATAAGCTAGTCTG
ACTTTTGGCCTATGCATTACAGTACAAAGTTGTCATTGCCATTTCCTCTG
AGCTTTTAGGAAACTATAGGATGCTTGTTCTCTAAGTTTACAACTAACTC
AGGCAAGCATGATTTTGCTTTATTTATTTTGTGTTAGTCTTACAGTTTTC
CTCGAAATTCTGAACATGTTCGTGAACAGACATGGAATGTTCAACGGAAT
TTTTTTTTAGCAGA
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001357BRCT_dom