g.arboreum_cottongen_reftransV1_0019827, g.arboreum_cottongen_reftransV1_0019827 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0019827
Unique Nameg.arboreum_cottongen_reftransV1_0019827
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length415
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr7chromosomeg.arboreum_cottongen_reftransV1_0019827:1..415 .
Chr7:40766376..40766790 +
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0019827 vs. ExPASy TrEMBL
Match: A0A0B0MPP0_GOSAR (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Gossypium arboreum GN=F383_20631 PE=4 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.515e-49
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 3 
Query:   78 MANWLRISSRTVANHIKKRMNKGFMGGAVHVNQSSGLWWGLNRGGPVSDRNGRHRDPLAWNRATFLCVQRFKSTLAEKQH 317
            MANWLRISSRTVANHIKKRMNKGFMGGAVHVNQSSGLWWGLNRGGPVSDRNGRHRDPLAWNRATFLCVQRFKSTLAEKQH
Sbjct:    1 MANWLRISSRTVANHIKKRMNKGFMGGAVHVNQSSGLWWGLNRGGPVSDRNGRHRDPLAWNRATFLCVQRFKSTLAEKQH 80
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BLAST of g.arboreum_cottongen_reftransV1_0019827 vs. ExPASy TrEMBL
Match: A0A0D2TR42_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G251000 PE=4 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.896e-44
Identity = 75/80 (93.75%), Postives = 76/80 (95.00%), Query Frame = 3 
Query:   78 MANWLRISSRTVANHIKKRMNKGFMGGAVHVNQSSGLWWGLNRGGPVSDRNGRHRDPLAWNRATFLCVQRFKSTLAEKQH 317
            MANWLRISSRTVANHIKKRMNK FMGGAVHVNQSSGLWWGLNRGGPVSDRN RH DPLAWNRAT LCVQRFK+TLAEKQH
Sbjct:    1 MANWLRISSRTVANHIKKRMNKEFMGGAVHVNQSSGLWWGLNRGGPVSDRNRRHMDPLAWNRATLLCVQRFKTTLAEKQH 80
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019827 vs. ExPASy TrEMBL
Match: A0A061FII1_THECC (Thiamin diphosphate-binding fold (THDP-binding) superfamily protein OS=Theobroma cacao GN=TCM_035303 PE=4 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.256e-9
Identity = 43/88 (48.86%), Postives = 47/88 (53.41%), Query Frame = 3 
Query:   78 MANWLRISSRTVANHIKKRMNKGFMGGAVHVNQSSGLWWGLNRGGPVSDRNGRHR---------DPLAWNRATFLCVQRFKSTLAEKQ 314
            MA W   SSRT+ANHI+K MNKGFMGGAV V QSS   W              HR           L  NRAT   +QRFKST+AE Q
Sbjct:    1 MAIWWTRSSRTIANHIRKCMNKGFMGGAV-VKQSS---WSSTVQSCSLSSLSSHRLVPQNCSYLHSLPCNRATLFSLQRFKSTVAEGQ 84
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019827 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0B0MPP0_GOSAR2.515e-49100.002-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
A0A0D2TR42_GOSRA2.896e-4493.75Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061FII1_THECC2.256e-948.86Thiamin diphosphate-binding fold (THDP-binding) su... [more]
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BLAST of g.arboreum_cottongen_reftransV1_0019827 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0019827 ID=g.arboreum_cottongen_reftransV1_0019827; Name=g.arboreum_cottongen_reftransV1_0019827; organism=Gossypium arboreum; type=contig; length=415bp
AGCTCTATAATCAAAAGACATAAAATCAAACAATAAAAAGAAAAGAAAAG
AAAACCTTTGTTCTTAATTAATCTCCCATGGCGAATTGGTTGAGAATATC
ATCAAGAACCGTTGCCAACCACATAAAGAAACGCATGAACAAAGGGTTCA
TGGGGGGTGCTGTTCACGTTAACCAAAGTTCTGGTTTATGGTGGGGTTTG
AACCGTGGAGGGCCGGTTTCTGATCGGAACGGGAGACATAGAGATCCATT
GGCATGGAACAGGGCTACCTTTCTCTGCGTTCAGCGTTTCAAGTCCACCT
TAGCTGAAAAGCAACATGATTCGTTTCTGTCTAGCGATAGTGACGATGAT
AATCAGGTACGTACTATTGGCTTGCTTATTACGCTTGAATGAATGGAAAA
TTTTAGAGTTTTTTT
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