g.arboreum_cottongen_reftransV1_0005152, g.arboreum_cottongen_reftransV1_0005152 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0005152
Unique Nameg.arboreum_cottongen_reftransV1_0005152
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1495
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr13chromosomeg.arboreum_cottongen_reftransV1_0005152:1..1494 .
Chr13:101631934..101636199 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: A0A0D2U3K6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G188400 PE=4 SV=1)

HSP 1 Score: 689.493 bits (1778), Expect = 0.000e+0
Identity = 385/395 (97.47%), Postives = 388/395 (98.23%), Query Frame = -2
Query:  310 RASKQKLEELLQKWSEWQAEHGSSLQENELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHXXXXXXXXXXXRYFSDYEDEGVPGVDSRVSSSYPPRYGNYDSPYGFNXXXXXXXXXXXXXXXXXXXXXXXXSPLVYEDFGSHGSYGSRYSPRAHGFEYETDERWDNSYLD 1494
            RASKQKLEELLQKWSEWQAE GSSLQENELTESGEKTYFPALRVGADK SAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEI+DEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYAD E DEGQEDGEIAEMVQQPEP+MKMTVEFPGINAPIPVEADEKLWAPS SSESFKSRSQSHHRVNHSSESGSRGLERRYFSDYEDEG PGVDSRVSSS+PPRYGNYDSPYGFNSPR PIPRPRSPTSGRSYYERGRRSPLVYEDFGSHGSYGSRYSPRAHGFEYETDERWDNSYLD
Sbjct:  179 RASKQKLEELLQKWSEWQAEQGSSLQENELTESGEKTYFPALRVGADKPSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIQDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADVETDEGQEDGEIAEMVQQPEPQMKMTVEFPGINAPIPVEADEKLWAPSPSSESFKSRSQSHHRVNHSSESGSRGLERRYFSDYEDEGPPGVDSRVSSSHPPRYGNYDSPYGFNSPRHPIPRPRSPTSGRSYYERGRRSPLVYEDFGSHGSYGSRYSPRAHGFEYETDERWDNSYLD 573          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: A0A061EH06_THECC (Proline-rich spliceosome-associated family protein / zinc knuckle family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_019539 PE=4 SV=1)

HSP 1 Score: 525.013 bits (1351), Expect = 8.730e-178
Identity = 288/409 (70.42%), Postives = 308/409 (75.31%), Query Frame = -2
Query:  310 RASKQKLEELLQKWSEWQAEHGS-SLQENELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAP-DEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHXX-XXXXXXXXXRYFSDYEDEGVPGVDSRVSSSYPPRYGNYDSPYGFNXXXXXXXXXXXXXXXXXXXXXXXXSPLVYEDFGSHGSYGS--------RYSPRAHG---FEYETDERWDNSYLD 1494
            RASKQKLEELLQKWSEWQAEHG+ S  ENEL ESGE+TYFPALRVGA+K S VSFWID+Q RN  D E I LD NIVPLYDRG+AM LTSAD SSNLEGGLEIKD+ASRCFNCGSYSHSLKQCPKPRDN+AVN ARKQH KSKRNQ+  SRNA RYYQ+SQGGKYDDLKPGVL A+TRQLLGLGEFDPPPWLNRMREIGYP GYLAP DED+PSGITIYAD E +E QEDGEI E+V   EP  KMTVEFPGINAPIPVEADEKLWAP  SS             + S   S     ERRY  D+EDEG PGVD+R SSSYPPRYGNYDSP+ F+             +         RSPLVYEDF SHGSY S        R SPR HG   FE E DERW+NSY D
Sbjct:  175 RASKQKLEELLQKWSEWQAEHGTLSPDENELIESGEETYFPALRVGAEKPSTVSFWIDNQTRNPRDTEIITLDSNIVPLYDRGYAMCLTSADGSSNLEGGLEIKDDASRCFNCGSYSHSLKQCPKPRDNLAVNAARKQHYKSKRNQNTGSRNAIRYYQSSQGGKYDDLKPGVLSADTRQLLGLGEFDPPPWLNRMREIGYPTGYLAPDDEDQPSGITIYADGETNEEQEDGEITEVVHA-EPEKKMTVEFPGINAPIPVEADEKLWAPGSSSSESSRSRSHRRLHHSSEPGSRGHHHERRYLGDFEDEGPPGVDTRFSSSYPPRYGNYDSPHSFH-SPRDPIPRPRSPTLGRSNSDRGRSPLVYEDFASHGSYSSTHHSLSDRRTSPRIHGSARFESEIDERWENSYPD 581          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: A0A067F6U2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007230mg PE=4 SV=1)

HSP 1 Score: 409.068 bits (1050), Expect = 5.014e-135
Identity = 219/329 (66.57%), Postives = 248/329 (75.38%), Query Frame = -2
Query:  517 RASKQKLEELLQKWSEWQAEHGSSLQE-NELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYL-APDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHXXXXXXXXXXXRYFS-DYEDEGVPGVDSRVSSSYPPRYGNYD 1494
            RASKQKLEELLQ+WSEWQA+ GSS  + NE  E GE+T+FPA+RVG  K  AVSFWID+Q RN  +  FIP D +  PLYDRG+A+GLTS D SSNLEGGLEI D+ASRCFNCGSYSHSLK+CPKPRD  AVNNARKQH KSKRNQ++ASRN  RYYQNS GGKYD L+PG L AETRQLLGLGE DPPPWL+RMRE+GYPPGYL + D+D+PSGITIYAD E+ EGQEDGEI E   +P  + KMT EFPGINAPIP  ADE+LWA   SS         H   +HS          + +S DY D+G PGVD    SSYPPRYG YD
Sbjct:   19 RASKQKLEELLQQWSEWQAQFGSSSNDPNEGIEFGEQTFFPAIRVGKAKGPAVSFWIDNQTRNQQNKNFIPSDSHGTPLYDRGYALGLTSGDGSSNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQH-KSKRNQNSASRNPMRYYQNSAGGKYDGLRPGALDAETRQLLGLGELDPPPWLHRMRELGYPPGYLDSEDDDQPSGITIYADGEIKEGQEDGEIIE-TGRPASKRKMTTEFPGINAPIPENADERLWAARPSSSDSSRDRSHHRLNHHSESISRGRYHEQRWSRDYRDDGPPGVDP--VSSYPPRYGGYD 343          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: A0A067EYG8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007230mg PE=4 SV=1)

HSP 1 Score: 409.838 bits (1052), Expect = 5.752e-135
Identity = 229/380 (60.26%), Postives = 261/380 (68.68%), Query Frame = -2
Query:  364 RASKQKLEELLQKWSEWQAEHGSSLQE-NELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYL-APDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHXXXXXXXXXXXRYFS-DYEDEGVPGVDSRVSSSYPPRYGNYDSPYGFNXXXXXXXXXXXXXXXXXXXXXXXXSPLVYEDFGSHGSYGSRYSPR 1494
            RASKQKLEELLQ+WSEWQA+ GSS  + NE  E GE+T+FPA+RVG  K  AVSFWID+Q RN  +  FIP D +  PLYDRG+A+GLTS D SSNLEGGLEI D+ASRCFNCGSYSHSLK+CPKPRD  AVNNARKQH KSKRNQ++ASRN  RYYQNS GGKYD L+PG L AETRQLLGLGE DPPPWL+RMRE+GYPPGYL + D+D+PSGITIYAD E+ EGQEDGEI E   +P  + KMT EFPGINAPIP  ADE+LWA   SS         H   +HS          + +S DY D+G PGVD    SSYPPRYG YD     +                             +D+ SHGSY S YS R
Sbjct:   40 RASKQKLEELLQQWSEWQAQFGSSSNDPNEGIEFGEQTFFPAIRVGKAKGPAVSFWIDNQTRNQQNKNFIPSDSHGTPLYDRGYALGLTSGDGSSNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQH-KSKRNQNSASRNPMRYYQNSAGGKYDGLRPGALDAETRQLLGLGELDPPPWLHRMRELGYPPGYLDSEDDDQPSGITIYADGEIKEGQEDGEIIE-TGRPASKRKMTTEFPGINAPIPENADERLWAARPSSSDSSRDRSHHRLNHHSESISRGRYHEQRWSRDYRDDGPPGVDP--VSSYPPRYGGYDYYSSHSRSPTRGRSYSDRDR---------------DDYASHGSYSSPYSNR 400          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: A0A067F603_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007230mg PE=4 SV=1)

HSP 1 Score: 405.986 bits (1042), Expect = 5.567e-134
Identity = 218/328 (66.46%), Postives = 247/328 (75.30%), Query Frame = -2
Query:  517 ASKQKLEELLQKWSEWQAEHGSSLQE-NELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYL-APDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHXXXXXXXXXXXRYFS-DYEDEGVPGVDSRVSSSYPPRYGNYD 1491
            ASKQKLEELLQ+WSEWQA+ GSS  + NE  E GE+T+FPA+RVG  K  AVSFWID+Q RN  +  FIP D +  PLYDRG+A+GLTS D SSNLEGGLEI D+ASRCFNCGSYSHSLK+CPKPRD  AVNNARKQH KSKRNQ++ASRN  RYYQNS GGKYD L+PG L AETRQLLGLGE DPPPWL+RMRE+GYPPGYL + D+D+PSGITIYAD E+ EGQEDGEI E   +P  + KMT EFPGINAPIP  ADE+LWA   SS         H   +HS          + +S DY D+G PGVD    SSYPPRYG YD
Sbjct:    9 ASKQKLEELLQQWSEWQAQFGSSSNDPNEGIEFGEQTFFPAIRVGKAKGPAVSFWIDNQTRNQQNKNFIPSDSHGTPLYDRGYALGLTSGDGSSNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQH-KSKRNQNSASRNPMRYYQNSAGGKYDGLRPGALDAETRQLLGLGELDPPPWLHRMRELGYPPGYLDSEDDDQPSGITIYADGEIKEGQEDGEIIE-TGRPASKRKMTTEFPGINAPIPENADERLWAARPSSSDSSRDRSHHRLNHHSESISRGRYHEQRWSRDYRDDGPPGVDP--VSSYPPRYGGYD 332          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: A0A067EUS5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007230mg PE=4 SV=1)

HSP 1 Score: 407.912 bits (1047), Expect = 6.740e-132
Identity = 229/380 (60.26%), Postives = 261/380 (68.68%), Query Frame = -2
Query:  364 RASKQKLEELLQKWSEWQAEHGSSLQE-NELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYL-APDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHXXXXXXXXXXXRYFS-DYEDEGVPGVDSRVSSSYPPRYGNYDSPYGFNXXXXXXXXXXXXXXXXXXXXXXXXSPLVYEDFGSHGSYGSRYSPR 1494
            RASKQKLEELLQ+WSEWQA+ GSS  + NE  E GE+T+FPA+RVG  K  AVSFWID+Q RN  +  FIP D +  PLYDRG+A+GLTS D SSNLEGGLEI D+ASRCFNCGSYSHSLK+CPKPRD  AVNNARKQH KSKRNQ++ASRN  RYYQNS GGKYD L+PG L AETRQLLGLGE DPPPWL+RMRE+GYPPGYL + D+D+PSGITIYAD E+ EGQEDGEI E   +P  + KMT EFPGINAPIP  ADE+LWA   SS         H   +HS          + +S DY D+G PGVD    SSYPPRYG YD     +                             +D+ SHGSY S YS R
Sbjct:  214 RASKQKLEELLQQWSEWQAQFGSSSNDPNEGIEFGEQTFFPAIRVGKAKGPAVSFWIDNQTRNQQNKNFIPSDSHGTPLYDRGYALGLTSGDGSSNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQH-KSKRNQNSASRNPMRYYQNSAGGKYDGLRPGALDAETRQLLGLGELDPPPWLHRMRELGYPPGYLDSEDDDQPSGITIYADGEIKEGQEDGEIIE-TGRPASKRKMTTEFPGINAPIPENADERLWAARPSSSDSSRDRSHHRLNHHSESISRGRYHEQRWSRDYRDDGPPGVDP--VSSYPPRYGGYDYYSSHSRSPTRGRSYSDRDR---------------DDYASHGSYSSPYSNR 574          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: M5XA06_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003054mg PE=4 SV=1)

HSP 1 Score: 400.979 bits (1029), Expect = 2.722e-129
Identity = 223/337 (66.17%), Postives = 258/337 (76.56%), Query Frame = -2
Query:  499 RASKQKLEELLQKWSEWQAEHGSSLQEN-ELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAP-DEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHXXX--XXXXXXXXRYFSDYEDEGVPGVD-SRVSSSYPPRYGNYDSPYGFN 1494
            RASK KLEELLQ+WSEW A++  S Q+  E+ ESGE T+FPAL VG +K SAVSFW+D+Q R     E  PLD N VPLYDRG+A+GLT A  SSNLEGGLEI D+ASRCFNCGSY+HSLK CPKPR++VAVNNARKQ  K KRNQ+A SRN+TRYYQNS  GKYD L+PG L AETR+LLG+GE DPPPWLNRMREIGYPPGYL P DED+PSGI IYAD E+   QEDGEI E    PEP+ KMTVEFPG+N PIP +ADE+LWAP   S S  SR++S+ R NH SE  S     E+R+  DY D+G PGV+     SSYPPRYG+YD  YG+N
Sbjct:  204 RASKHKLEELLQQWSEWHAQYVPSSQDPIEVVESGEDTFFPALHVGTEKTSAVSFWMDNQTRKAESKESTPLDSNYVPLYDRGYALGLTLAGGSSNLEGGLEIIDDASRCFNCGSYNHSLKDCPKPRNHVAVNNARKQ-LKFKRNQNANSRNSTRYYQNSPAGKYDGLRPGALDAETRKLLGIGELDPPPWLNRMREIGYPPGYLDPDDEDQPSGIIIYADEEIKGEQEDGEIIE-TDYPEPQRKMTVEFPGLNGPIPEDADERLWAP-GPSFSDHSRNRSYSRSNHYSEPVSRGHHREQRWSRDYRDDGPPGVEPGSGPSSYPPRYGSYD--YGYN 535          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: A0A067KD22_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12954 PE=4 SV=1)

HSP 1 Score: 402.134 bits (1032), Expect = 5.705e-129
Identity = 243/407 (59.71%), Postives = 288/407 (70.76%), Query Frame = -2
Query:  310 RASKQKLEELLQKWSEWQAEHGSSLQE-NELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAP-DEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHXXXXXXXXXXXRYFS--DYEDEGVPGVDSRVS---SSYPPRYGNYDSPYGFNXXXXXXXXXXXXXXXXXXXXXXXXSPLVYED-----FGSHGSYGSRYSPRAHGFEYETDERWDNSYLD 1494
            R+SK+KLEE+LQ+WSEW A+HGS  QE +E+ ESGE+TYFPAL VG +K S VSFWI+++ +      + P DG  VPLYDRGFA+GL+S D  SN+EGGLEI  EA+RCFNCGSYSHSLK+CPKPR+N AVNNARKQH KSKRNQ A SRN+ RYYQN  GGKY+ LKPG L AETR+LLG+GE DPPPWLNRMRE+GYPPGYL P DED+PSGITI+AD +V E QEDGEI E  + P+P  K  VEFPGINAPIP  ADE++WA +  S    SR++ H R NHSSES SR          D  DEG PGVD   S   SSYPPRYGN+DS Y  +      P+    +  RS+ +RG+RSPLVYED        + S   R SP+    E  TDERW+ S  D
Sbjct:  249 RSSKRKLEEVLQQWSEWHAQHGSMSQELDEVLESGEETYFPALCVGMEKSSTVSFWIENEPKKPRSNGYNPSDGGTVPLYDRGFALGLSSTDGPSNVEGGLEIVGEAARCFNCGSYSHSLKECPKPRNNAAVNNARKQH-KSKRNQVAGSRNSIRYYQNLSGGKYEGLKPGALDAETRRLLGIGELDPPPWLNRMRELGYPPGYLDPDDEDQPSGITIFADEDVQEEQEDGEIVE-TENPDPPRKKAVEFPGINAPIPENADERIWA-AGPSGYDPSRNRLHRRSNHSSESISRWNHYEQRGPRDSIDEGPPGVDPVFSPSRSSYPPRYGNHDSSYNLD-----SPKDSFASLSRSHSDRGKRSPLVYEDSASHSSSPYSSSNKRTSPKDR-LENVTDERWNESGSD 646          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: B9SJ03_RICCO (Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0597470 PE=4 SV=1)

HSP 1 Score: 400.208 bits (1027), Expect = 7.292e-128
Identity = 245/408 (60.05%), Postives = 293/408 (71.81%), Query Frame = -2
Query:  310 RASKQKLEELLQKWSEWQAEHGSSLQE-NELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAP-DEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHXXXXXXX--XXXXRYFSDYEDEGVPGVDSRVS-SSYPPRYGNYDSPYGFNXXXXXXXXXXXXXXXXXXXXXXXXSPLVYEDFG-----SHGSYGSRYSPR---AHGFEYETDERWDNSYLD 1494
            RASK+KLEELLQ+WSEW  + GSS Q+ NE+ ESGE+TYFPAL VG +K SAVSFWI++Q +   + + I  D + VPLYDRGFA+GLTS D  SN+EGGLEI +EA+RCFNCGSYSH+LK+CPKPR+N AVNNARKQH KSKRNQ+A SRN TRYYQ+S GGKY+ LKPG L AETR+LLGLGE DPPPWLNRMRE+GYPPGYL P DED+PSGI I+AD ++ + QEDGEI E  + P+P  KM VEFPGINAPIP  ADE+LW  +  S     R++   + +HSSE+ SR    E+R   D  DEG PGVD   S SS+PPRYGNYDS     S      R  + +  RS  E+GRRSP+VYEDF         S   R SP+   +   E ETDERW+ S LD
Sbjct:  271 RASKRKLEELLQQWSEWHVQRGSSSQDLNEVLESGEETYFPALCVGTEKSSAVSFWIENQTKKQLNNDLISSDSDSVPLYDRGFAIGLTSTDGPSNVEGGLEIVNEAARCFNCGSYSHALKECPKPRNNAAVNNARKQH-KSKRNQNAGSRNGTRYYQSSSGGKYEGLKPGSLDAETRRLLGLGELDPPPWLNRMRELGYPPGYLDPDDEDQPSGIIIFADGDIKDEQEDGEIIE-TENPDPPRKMAVEFPGINAPIPENADERLWE-TGPSSYNSFRNRPFRKSDHSSETISRWHHHEQRGSRDSIDEGPPGVDPVFSPSSFPPRYGNYDS-----SYSSDSLRGSTASLPRSRSEKGRRSPVVYEDFASHSSSPFSSLNKRSSPKDNDSDRLESETDERWNYSRLD 670          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: U5FMW3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s14060g PE=4 SV=1)

HSP 1 Score: 390.578 bits (1002), Expect = 4.150e-125
Identity = 211/329 (64.13%), Postives = 248/329 (75.38%), Query Frame = -2
Query:  526 RASKQKLEELLQKWSEWQAEHGSSLQENELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAP-DEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHXXXXXXX--XXXXRYFSDYEDEGVPGVDSRVS---SSYPPRYG 1494
            R+ KQKLEELLQ+WSEW A+  SS   +E+ +SGE TYFPALRVG +K SAVSFWI++Q R   D + I    N VPLYDRG+ +GLTSAD   N+EGGLEI D A+RCFNCG+Y+HSLK+CPKPRDN AVNNARKQH K KRNQ+++SRN TRYYQ+S GGKYD LKPG L  ETRQLLGLGE DPPPWLNRMRE+GYPPGYL P DED+PSGITI+ D +V+E QEDGEI E    PEP  KM+VEFPGINAPIP  A+++ W     S S   R +S HR NHSSE+  R    E+R + D+ ++G PGVD   S   SSYPPRYG
Sbjct:  195 RSGKQKLEELLQQWSEWHAQQNSSHDSDEMLQSGEDTYFPALRVGMEKSSAVSFWIENQARKQQDNDLILQHSNFVPLYDRGYVLGLTSADGPINVEGGLEIVDAAARCFNCGAYNHSLKECPKPRDNAAVNNARKQH-KFKRNQNSSSRNPTRYYQSSSGGKYDGLKPGSLDTETRQLLGLGELDPPPWLNRMRELGYPPGYLDPDDEDQPSGITIFDDGDVEEEQEDGEIME-TDHPEPPRKMSVEFPGINAPIPENANQRFWE-VGPSSSDPFRHRSRHRSNHSSEATGRWHHHEQRQYRDFINDGPPGVDPVFSPSMSSYPPRYG 520          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_XENLA (Zinc finger CCHC domain-containing protein 8 OS=Xenopus laevis GN=zcchc8 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.347e-21
Identity = 65/189 (34.39%), Postives = 97/189 (51.32%), Query Frame = -2
Query:  727 VPLYDRGFAMGLTSADASSNLEGGLEIKDEASR----CFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADAEVDEGQEDGEI----AEMVQQPEPRMKMTVEFPGINAPIP 1269
            +P Y + F   + S D       G EI+ +A R    CFNCGS  H ++ CPKPRD   +N  RK+   +     A ++N  RY+      ++   KPGV+  E ++ LG+ + + PP++ RMRE+GYPPG+L   E E SG+++Y D +      DGEI     E  +     +   V +PG N   P
Sbjct:  186 IPKYQQVFTQ-IVSLD-------GQEIQVKAKRPKPCCFNCGSEEHQMRDCPKPRDQAHINMKRKEFLDA--CGEAGNQNQQRYHAEEVEERFGKYKPGVISEELQEALGIMDKNLPPFIYRMRELGYPPGWLKEAELENSGLSLY-DGKERLDASDGEIEDRDTEAKKHVSYDVSKLVNYPGFNISAP 363          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_CHICK (Zinc finger CCHC domain-containing protein 8 OS=Gallus gallus GN=ZCCHC8 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.350e-18
Identity = 57/184 (30.98%), Postives = 95/184 (51.63%), Query Frame = -2
Query:  727 VPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPR---MKMTVEFPGINAPIP 1269
            +P Y + F+  L S D     E  ++ K   S CFNCGS  H +K CPKPR+   ++  RK+  ++   +++      RY+      ++   KPGV+  E +  LG+     PP++ RMR++GYPPG+L   E E SG+ +Y   + +E +++G +     QP+     +   + +PG N   P
Sbjct:   99 IPKYQQVFSQIL-SLDGQ---EIQVKPKRPKSHCFNCGSEEHQIKDCPKPRNAARISEKRKEFMEA-YGEASNQNFQQRYHAEEVEERFGKFKPGVISGELQDALGVTAKSLPPFIYRMRQLGYPPGWLKEAEMEHSGLALYDGKDDNETEDEGYL-----QPKHVTYDVSKLINYPGFNISTP 272          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_PONAB (Zinc finger CCHC domain-containing protein 8 OS=Pongo abelii GN=ZCCHC8 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.524e-18
Identity = 55/165 (33.33%), Postives = 88/165 (53.33%), Query Frame = -2
Query:  727 GLEIKDEASR----CFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRN-ATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMT--VEFPGINAPIP 1200
            G EI+ +A R    CFNCGS  H +K CP PR+   ++  RK++  +     A ++N   RY+      ++   KPGV+  E +  LG+ +   PP++ RMR++GYPPG+L   E E SG+ +Y   +  +G+   E+ E+ Q       ++  V +PG N   P
Sbjct:  213 GQEIQVKAKRPKPHCFNCGSEEHQMKDCPMPRNAARISEKRKEYMDA--CGEANNQNFQQRYHAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWLKEAELENSGLALYDGKDGTDGE--TEVGEIQQNKSVTYDLSKLVNYPGFNISTP 373          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_HUMAN (Zinc finger CCHC domain-containing protein 8 OS=Homo sapiens GN=ZCCHC8 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 6.784e-18
Identity = 53/164 (32.32%), Postives = 86/164 (52.44%), Query Frame = -2
Query:  727 GLEIKDEASR----CFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMT--VEFPGINAPIP 1200
            G EI+ +A R    CFNCGS  H +K CP PR+   ++  RK++  +   ++       RY+      ++   KPGV+  E +  LG+ +   PP++ RMR++GYPPG+L   E E SG+ +Y   +  +G  + E+ E+ Q       ++  V +PG N   P
Sbjct:  215 GQEIQVKAKRPKPHCFNCGSEEHQMKDCPMPRNAARISEKRKEYMDAC-GEANNQNFQQRYHAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWLKEAELENSGLALYDGKDGTDG--ETEVGEIQQNKSVTYDLSKLVNYPGFNISTP 375          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_MOUSE (Zinc finger CCHC domain-containing protein 8 OS=Mus musculus GN=Zcchc8 PE=2 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 9.519e-18
Identity = 55/163 (33.74%), Postives = 85/163 (52.15%), Query Frame = -2
Query:  727 GLEIKDEASR----CFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIY-ADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIP 1200
            G E++ +A R    CFNCGS  H +K+CP PR+   ++  RK++  +    S  S    RY+      ++   KPGV+  E +  LG+ +   PP++ RMR++GYPPG+L   E E SG+ +Y  + + D   E GEI    +     +   V +PG N   P
Sbjct:  218 GQEMQVKAKRPKPHCFNCGSEEHQMKECPMPRNAARISEKRKEYMDACGEASGQSFQ-QRYHAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWLKEAELENSGLALYDGNDDADGETETGEIQN--KNVTYDLSKLVNYPGFNISTP 377          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_DROME (Zinc finger CCHC domain-containing protein 8 homolog OS=Drosophila melanogaster GN=CG4622 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.478e-13
Identity = 47/149 (31.54%), Postives = 76/149 (51.01%), Query Frame = -2
Query:  736 SRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIY-AD-AEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINA 1176
            S CFNCG   HSL+ C KPR+N  +  ARK+           +    RY+ +++  ++  ++PG +  +TR  +G      P    RMR +GYPP +L   + + SGI ++ AD +EV +  E+   +E  +     +   VE+PG N 
Sbjct:  183 SSCFNCGDTEHSLRDCTKPRNNSRITRARKK----------MTSRTERYHVDTE-QRFGHIRPGKISTKTRHAMGYSRGQLPFIFYRMRVLGYPPAWLEEAKVQSSGIALFNADGSEVTKSDEEEGESETFKYD---VNKIVEYPGFNV 317          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2U3K6_GOSRA0.000e+097.47Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061EH06_THECC8.730e-17870.42Proline-rich spliceosome-associated family protein... [more]
A0A067F6U2_CITSI5.014e-13566.57Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A067EYG8_CITSI5.752e-13560.26Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A067F603_CITSI5.567e-13466.46Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A067EUS5_CITSI6.740e-13260.26Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
M5XA06_PRUPE2.722e-12966.17Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A067KD22_JATCU5.705e-12959.71Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
B9SJ03_RICCO7.292e-12860.05Nucleic acid binding protein, putative OS=Ricinus ... [more]
U5FMW3_POPTR4.150e-12564.13Uncharacterized protein OS=Populus trichocarpa GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ZCHC8_XENLA4.347e-2134.39Zinc finger CCHC domain-containing protein 8 OS=Xe... [more]
ZCHC8_CHICK1.350e-1830.98Zinc finger CCHC domain-containing protein 8 OS=Ga... [more]
ZCHC8_PONAB6.524e-1833.33Zinc finger CCHC domain-containing protein 8 OS=Po... [more]
ZCHC8_HUMAN6.784e-1832.32Zinc finger CCHC domain-containing protein 8 OS=Ho... [more]
ZCHC8_MOUSE9.519e-1833.74Zinc finger CCHC domain-containing protein 8 OS=Mu... [more]
ZCHC8_DROME1.478e-1331.54Zinc finger CCHC domain-containing protein 8 homol... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006568PSP, proline-richSMARTSM00581testneucoord: 154..206
e-value: 3.9E-11
score: 53.0
IPR006568PSP, proline-richPFAMPF04046PSPcoord: 158..196
e-value: 9.3E-14
score: 50.9
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 95..130
e-value: 1.1E-4
score: 21.4
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 98..114
score: 8.944
NoneNo IPR availablePANTHERPTHR13316ZINC FINGER, CCHC DOMAIN CONTAINING 8coord: 1..341

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0005152 ID=g.arboreum_cottongen_reftransV1_0005152; Name=g.arboreum_cottongen_reftransV1_0005152; organism=Gossypium arboreum; type=contig; length=1495bp
GTAATATCCACCCGACTATCATCCCCAAGAAAGAAGAGATTATAATAAGA
GCAAGATGACTAATACATCTACGGTAAACAAACCATTTAAATTAATCTTA
GGCCTATCTATCTAAATCATTGTACAATGATCTTCCCACTTCACTGTTGC
TAAAACTATCAATGCATCCACCCTTTGTCTAGAAATCTTTACAAGTTATG
TGGGCCACAGGGGGTGCTAAACAATCATATCTACTGACAAAATTGAAAGT
TACAACAGTGCCATTCACCACCGGCTGTGATATCGATGGCTACTATACCG
AGATGAATAATCCAGGTAGCTGTTGTCCCATCTTTCATCGGTCTCATATT
CAAATCCATGAGCTCTTGGAGAATATCTTGAACCGTAGGAGCCATGACTA
CCAAAATCTTCATATACCAAGGGGCTCCTTCTACCCCTCTCATAATACGA
CCTTCCCGAGGTGGGGCTTCGTGGCCTTGGAATAGGATCTCTTGGACTGT
TAAAACCGTATGGTGAATCATAATTACCATACCTTGGGGGATAGGATGAA
CTAACTCTGGAGTCAACTCCGGGAACGCCTTCATCTTCATAATCACTAAA
ATACCTTCGTTCCAGCCCTCTGCTGCCAGATTCAGAAGAATGGTTCACTC
TATGGTGCGACTGTGACCTACTCTTGAATGATTCAGAACTTCGACTAGGA
GCCCAAAGTTTTTCATCTGCCTCAACAGGGATTGGTGCATTTATGCCTGG
AAATTCAACTGTCATTTTCATCCGTGGTTCAGGCTGCTGCACCATCTCAG
CAATTTCTCCATCTTCCTGTCCTTCATCGACTTCGGCATCAGCATATATT
GTAATTCCAGATGGCTCATCCTCGTCAGGGGCTAGATATCCCGGTGGGTA
CCCAATTTCTCGCATTCTATTAAGCCACGGTGGAGGGTCGAACTCCCCAA
GGCCTAATAGTTGTCGTGTTTCAGCACCAAGAACACCAGGCTTTAGATCA
TCATACTTTCCACCTTGAGAGTTCTGATAATAGCGAGTTGCATTGCGAGA
AGCAGCACTCTGATTACGTTTGGACTTTTGGTGTTGCTTTCGAGCATTGT
TGACAGCAACATTGTCACGAGGCTTTGGGCATTGCTTCAGGGAATGACTA
TAAGAACCACAGTTGAAACAACGGGAAGCCTCGTCTTTTATCTCCAGGCC
TCCTTCCAAATTACTTGAAGCATCTGCTGAAGTCAAACCCATTGCAAACC
CACGATCATAAAGTGGCACAATATTACCATCCAGAGGGATGAACTCCATA
TCATGCAGATTCCTTCTTTGATCGTCAATCCAGAATGACACGGCAGAGAG
CTTATCTGCACCAACACGTAGAGCAGGAAAGTAGGTCTTTTCTCCTGATT
CTGTAAGTTCATTTTCTTGCAATGATGAACCATGTTCAGCTTGCCATTCT
GACCACTTCTGCAAAAGCTCCTCAAGCTTCTGTTTACTAGCTCTT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR006568PSP_pro-rich
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding