g.arboreum_cottongen_reftransV1_0005152, g.arboreum_cottongen_reftransV1_0005152 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: A0A0D2U3K6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G188400 PE=4 SV=1) HSP 1 Score: 689.493 bits (1778), Expect = 0.000e+0 Identity = 385/395 (97.47%), Postives = 388/395 (98.23%), Query Frame = -2 Query: 310 RASKQKLEELLQKWSEWQAEHGSSLQENELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHXXXXXXXXXXXRYFSDYEDEGVPGVDSRVSSSYPPRYGNYDSPYGFNXXXXXXXXXXXXXXXXXXXXXXXXSPLVYEDFGSHGSYGSRYSPRAHGFEYETDERWDNSYLD 1494 RASKQKLEELLQKWSEWQAE GSSLQENELTESGEKTYFPALRVGADK SAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEI+DEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYAD E DEGQEDGEIAEMVQQPEP+MKMTVEFPGINAPIPVEADEKLWAPS SSESFKSRSQSHHRVNHSSESGSRGLERRYFSDYEDEG PGVDSRVSSS+PPRYGNYDSPYGFNSPR PIPRPRSPTSGRSYYERGRRSPLVYEDFGSHGSYGSRYSPRAHGFEYETDERWDNSYLD Sbjct: 179 RASKQKLEELLQKWSEWQAEQGSSLQENELTESGEKTYFPALRVGADKPSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIQDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADVETDEGQEDGEIAEMVQQPEPQMKMTVEFPGINAPIPVEADEKLWAPSPSSESFKSRSQSHHRVNHSSESGSRGLERRYFSDYEDEGPPGVDSRVSSSHPPRYGNYDSPYGFNSPRHPIPRPRSPTSGRSYYERGRRSPLVYEDFGSHGSYGSRYSPRAHGFEYETDERWDNSYLD 573
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: A0A061EH06_THECC (Proline-rich spliceosome-associated family protein / zinc knuckle family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_019539 PE=4 SV=1) HSP 1 Score: 525.013 bits (1351), Expect = 8.730e-178 Identity = 288/409 (70.42%), Postives = 308/409 (75.31%), Query Frame = -2 Query: 310 RASKQKLEELLQKWSEWQAEHGS-SLQENELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAP-DEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHXX-XXXXXXXXXRYFSDYEDEGVPGVDSRVSSSYPPRYGNYDSPYGFNXXXXXXXXXXXXXXXXXXXXXXXXSPLVYEDFGSHGSYGS--------RYSPRAHG---FEYETDERWDNSYLD 1494 RASKQKLEELLQKWSEWQAEHG+ S ENEL ESGE+TYFPALRVGA+K S VSFWID+Q RN D E I LD NIVPLYDRG+AM LTSAD SSNLEGGLEIKD+ASRCFNCGSYSHSLKQCPKPRDN+AVN ARKQH KSKRNQ+ SRNA RYYQ+SQGGKYDDLKPGVL A+TRQLLGLGEFDPPPWLNRMREIGYP GYLAP DED+PSGITIYAD E +E QEDGEI E+V EP KMTVEFPGINAPIPVEADEKLWAP SS + S S ERRY D+EDEG PGVD+R SSSYPPRYGNYDSP+ F+ + RSPLVYEDF SHGSY S R SPR HG FE E DERW+NSY D Sbjct: 175 RASKQKLEELLQKWSEWQAEHGTLSPDENELIESGEETYFPALRVGAEKPSTVSFWIDNQTRNPRDTEIITLDSNIVPLYDRGYAMCLTSADGSSNLEGGLEIKDDASRCFNCGSYSHSLKQCPKPRDNLAVNAARKQHYKSKRNQNTGSRNAIRYYQSSQGGKYDDLKPGVLSADTRQLLGLGEFDPPPWLNRMREIGYPTGYLAPDDEDQPSGITIYADGETNEEQEDGEITEVVHA-EPEKKMTVEFPGINAPIPVEADEKLWAPGSSSSESSRSRSHRRLHHSSEPGSRGHHHERRYLGDFEDEGPPGVDTRFSSSYPPRYGNYDSPHSFH-SPRDPIPRPRSPTLGRSNSDRGRSPLVYEDFASHGSYSSTHHSLSDRRTSPRIHGSARFESEIDERWENSYPD 581
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: A0A067F6U2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007230mg PE=4 SV=1) HSP 1 Score: 409.068 bits (1050), Expect = 5.014e-135 Identity = 219/329 (66.57%), Postives = 248/329 (75.38%), Query Frame = -2 Query: 517 RASKQKLEELLQKWSEWQAEHGSSLQE-NELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYL-APDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHXXXXXXXXXXXRYFS-DYEDEGVPGVDSRVSSSYPPRYGNYD 1494 RASKQKLEELLQ+WSEWQA+ GSS + NE E GE+T+FPA+RVG K AVSFWID+Q RN + FIP D + PLYDRG+A+GLTS D SSNLEGGLEI D+ASRCFNCGSYSHSLK+CPKPRD AVNNARKQH KSKRNQ++ASRN RYYQNS GGKYD L+PG L AETRQLLGLGE DPPPWL+RMRE+GYPPGYL + D+D+PSGITIYAD E+ EGQEDGEI E +P + KMT EFPGINAPIP ADE+LWA SS H +HS + +S DY D+G PGVD SSYPPRYG YD Sbjct: 19 RASKQKLEELLQQWSEWQAQFGSSSNDPNEGIEFGEQTFFPAIRVGKAKGPAVSFWIDNQTRNQQNKNFIPSDSHGTPLYDRGYALGLTSGDGSSNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQH-KSKRNQNSASRNPMRYYQNSAGGKYDGLRPGALDAETRQLLGLGELDPPPWLHRMRELGYPPGYLDSEDDDQPSGITIYADGEIKEGQEDGEIIE-TGRPASKRKMTTEFPGINAPIPENADERLWAARPSSSDSSRDRSHHRLNHHSESISRGRYHEQRWSRDYRDDGPPGVDP--VSSYPPRYGGYD 343
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: A0A067EYG8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007230mg PE=4 SV=1) HSP 1 Score: 409.838 bits (1052), Expect = 5.752e-135 Identity = 229/380 (60.26%), Postives = 261/380 (68.68%), Query Frame = -2 Query: 364 RASKQKLEELLQKWSEWQAEHGSSLQE-NELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYL-APDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHXXXXXXXXXXXRYFS-DYEDEGVPGVDSRVSSSYPPRYGNYDSPYGFNXXXXXXXXXXXXXXXXXXXXXXXXSPLVYEDFGSHGSYGSRYSPR 1494 RASKQKLEELLQ+WSEWQA+ GSS + NE E GE+T+FPA+RVG K AVSFWID+Q RN + FIP D + PLYDRG+A+GLTS D SSNLEGGLEI D+ASRCFNCGSYSHSLK+CPKPRD AVNNARKQH KSKRNQ++ASRN RYYQNS GGKYD L+PG L AETRQLLGLGE DPPPWL+RMRE+GYPPGYL + D+D+PSGITIYAD E+ EGQEDGEI E +P + KMT EFPGINAPIP ADE+LWA SS H +HS + +S DY D+G PGVD SSYPPRYG YD + +D+ SHGSY S YS R Sbjct: 40 RASKQKLEELLQQWSEWQAQFGSSSNDPNEGIEFGEQTFFPAIRVGKAKGPAVSFWIDNQTRNQQNKNFIPSDSHGTPLYDRGYALGLTSGDGSSNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQH-KSKRNQNSASRNPMRYYQNSAGGKYDGLRPGALDAETRQLLGLGELDPPPWLHRMRELGYPPGYLDSEDDDQPSGITIYADGEIKEGQEDGEIIE-TGRPASKRKMTTEFPGINAPIPENADERLWAARPSSSDSSRDRSHHRLNHHSESISRGRYHEQRWSRDYRDDGPPGVDP--VSSYPPRYGGYDYYSSHSRSPTRGRSYSDRDR---------------DDYASHGSYSSPYSNR 400
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: A0A067F603_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007230mg PE=4 SV=1) HSP 1 Score: 405.986 bits (1042), Expect = 5.567e-134 Identity = 218/328 (66.46%), Postives = 247/328 (75.30%), Query Frame = -2 Query: 517 ASKQKLEELLQKWSEWQAEHGSSLQE-NELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYL-APDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHXXXXXXXXXXXRYFS-DYEDEGVPGVDSRVSSSYPPRYGNYD 1491 ASKQKLEELLQ+WSEWQA+ GSS + NE E GE+T+FPA+RVG K AVSFWID+Q RN + FIP D + PLYDRG+A+GLTS D SSNLEGGLEI D+ASRCFNCGSYSHSLK+CPKPRD AVNNARKQH KSKRNQ++ASRN RYYQNS GGKYD L+PG L AETRQLLGLGE DPPPWL+RMRE+GYPPGYL + D+D+PSGITIYAD E+ EGQEDGEI E +P + KMT EFPGINAPIP ADE+LWA SS H +HS + +S DY D+G PGVD SSYPPRYG YD Sbjct: 9 ASKQKLEELLQQWSEWQAQFGSSSNDPNEGIEFGEQTFFPAIRVGKAKGPAVSFWIDNQTRNQQNKNFIPSDSHGTPLYDRGYALGLTSGDGSSNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQH-KSKRNQNSASRNPMRYYQNSAGGKYDGLRPGALDAETRQLLGLGELDPPPWLHRMRELGYPPGYLDSEDDDQPSGITIYADGEIKEGQEDGEIIE-TGRPASKRKMTTEFPGINAPIPENADERLWAARPSSSDSSRDRSHHRLNHHSESISRGRYHEQRWSRDYRDDGPPGVDP--VSSYPPRYGGYD 332
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: A0A067EUS5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007230mg PE=4 SV=1) HSP 1 Score: 407.912 bits (1047), Expect = 6.740e-132 Identity = 229/380 (60.26%), Postives = 261/380 (68.68%), Query Frame = -2 Query: 364 RASKQKLEELLQKWSEWQAEHGSSLQE-NELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYL-APDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHXXXXXXXXXXXRYFS-DYEDEGVPGVDSRVSSSYPPRYGNYDSPYGFNXXXXXXXXXXXXXXXXXXXXXXXXSPLVYEDFGSHGSYGSRYSPR 1494 RASKQKLEELLQ+WSEWQA+ GSS + NE E GE+T+FPA+RVG K AVSFWID+Q RN + FIP D + PLYDRG+A+GLTS D SSNLEGGLEI D+ASRCFNCGSYSHSLK+CPKPRD AVNNARKQH KSKRNQ++ASRN RYYQNS GGKYD L+PG L AETRQLLGLGE DPPPWL+RMRE+GYPPGYL + D+D+PSGITIYAD E+ EGQEDGEI E +P + KMT EFPGINAPIP ADE+LWA SS H +HS + +S DY D+G PGVD SSYPPRYG YD + +D+ SHGSY S YS R Sbjct: 214 RASKQKLEELLQQWSEWQAQFGSSSNDPNEGIEFGEQTFFPAIRVGKAKGPAVSFWIDNQTRNQQNKNFIPSDSHGTPLYDRGYALGLTSGDGSSNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQH-KSKRNQNSASRNPMRYYQNSAGGKYDGLRPGALDAETRQLLGLGELDPPPWLHRMRELGYPPGYLDSEDDDQPSGITIYADGEIKEGQEDGEIIE-TGRPASKRKMTTEFPGINAPIPENADERLWAARPSSSDSSRDRSHHRLNHHSESISRGRYHEQRWSRDYRDDGPPGVDP--VSSYPPRYGGYDYYSSHSRSPTRGRSYSDRDR---------------DDYASHGSYSSPYSNR 574
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: M5XA06_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003054mg PE=4 SV=1) HSP 1 Score: 400.979 bits (1029), Expect = 2.722e-129 Identity = 223/337 (66.17%), Postives = 258/337 (76.56%), Query Frame = -2 Query: 499 RASKQKLEELLQKWSEWQAEHGSSLQEN-ELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAP-DEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHXXX--XXXXXXXXRYFSDYEDEGVPGVD-SRVSSSYPPRYGNYDSPYGFN 1494 RASK KLEELLQ+WSEW A++ S Q+ E+ ESGE T+FPAL VG +K SAVSFW+D+Q R E PLD N VPLYDRG+A+GLT A SSNLEGGLEI D+ASRCFNCGSY+HSLK CPKPR++VAVNNARKQ K KRNQ+A SRN+TRYYQNS GKYD L+PG L AETR+LLG+GE DPPPWLNRMREIGYPPGYL P DED+PSGI IYAD E+ QEDGEI E PEP+ KMTVEFPG+N PIP +ADE+LWAP S S SR++S+ R NH SE S E+R+ DY D+G PGV+ SSYPPRYG+YD YG+N Sbjct: 204 RASKHKLEELLQQWSEWHAQYVPSSQDPIEVVESGEDTFFPALHVGTEKTSAVSFWMDNQTRKAESKESTPLDSNYVPLYDRGYALGLTLAGGSSNLEGGLEIIDDASRCFNCGSYNHSLKDCPKPRNHVAVNNARKQ-LKFKRNQNANSRNSTRYYQNSPAGKYDGLRPGALDAETRKLLGIGELDPPPWLNRMREIGYPPGYLDPDDEDQPSGIIIYADEEIKGEQEDGEIIE-TDYPEPQRKMTVEFPGLNGPIPEDADERLWAP-GPSFSDHSRNRSYSRSNHYSEPVSRGHHREQRWSRDYRDDGPPGVEPGSGPSSYPPRYGSYD--YGYN 535
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: A0A067KD22_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12954 PE=4 SV=1) HSP 1 Score: 402.134 bits (1032), Expect = 5.705e-129 Identity = 243/407 (59.71%), Postives = 288/407 (70.76%), Query Frame = -2 Query: 310 RASKQKLEELLQKWSEWQAEHGSSLQE-NELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAP-DEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHXXXXXXXXXXXRYFS--DYEDEGVPGVDSRVS---SSYPPRYGNYDSPYGFNXXXXXXXXXXXXXXXXXXXXXXXXSPLVYED-----FGSHGSYGSRYSPRAHGFEYETDERWDNSYLD 1494 R+SK+KLEE+LQ+WSEW A+HGS QE +E+ ESGE+TYFPAL VG +K S VSFWI+++ + + P DG VPLYDRGFA+GL+S D SN+EGGLEI EA+RCFNCGSYSHSLK+CPKPR+N AVNNARKQH KSKRNQ A SRN+ RYYQN GGKY+ LKPG L AETR+LLG+GE DPPPWLNRMRE+GYPPGYL P DED+PSGITI+AD +V E QEDGEI E + P+P K VEFPGINAPIP ADE++WA + S SR++ H R NHSSES SR D DEG PGVD S SSYPPRYGN+DS Y + P+ + RS+ +RG+RSPLVYED + S R SP+ E TDERW+ S D Sbjct: 249 RSSKRKLEEVLQQWSEWHAQHGSMSQELDEVLESGEETYFPALCVGMEKSSTVSFWIENEPKKPRSNGYNPSDGGTVPLYDRGFALGLSSTDGPSNVEGGLEIVGEAARCFNCGSYSHSLKECPKPRNNAAVNNARKQH-KSKRNQVAGSRNSIRYYQNLSGGKYEGLKPGALDAETRRLLGIGELDPPPWLNRMRELGYPPGYLDPDDEDQPSGITIFADEDVQEEQEDGEIVE-TENPDPPRKKAVEFPGINAPIPENADERIWA-AGPSGYDPSRNRLHRRSNHSSESISRWNHYEQRGPRDSIDEGPPGVDPVFSPSRSSYPPRYGNHDSSYNLD-----SPKDSFASLSRSHSDRGKRSPLVYEDSASHSSSPYSSSNKRTSPKDR-LENVTDERWNESGSD 646
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: B9SJ03_RICCO (Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0597470 PE=4 SV=1) HSP 1 Score: 400.208 bits (1027), Expect = 7.292e-128 Identity = 245/408 (60.05%), Postives = 293/408 (71.81%), Query Frame = -2 Query: 310 RASKQKLEELLQKWSEWQAEHGSSLQE-NELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAP-DEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHXXXXXXX--XXXXRYFSDYEDEGVPGVDSRVS-SSYPPRYGNYDSPYGFNXXXXXXXXXXXXXXXXXXXXXXXXSPLVYEDFG-----SHGSYGSRYSPR---AHGFEYETDERWDNSYLD 1494 RASK+KLEELLQ+WSEW + GSS Q+ NE+ ESGE+TYFPAL VG +K SAVSFWI++Q + + + I D + VPLYDRGFA+GLTS D SN+EGGLEI +EA+RCFNCGSYSH+LK+CPKPR+N AVNNARKQH KSKRNQ+A SRN TRYYQ+S GGKY+ LKPG L AETR+LLGLGE DPPPWLNRMRE+GYPPGYL P DED+PSGI I+AD ++ + QEDGEI E + P+P KM VEFPGINAPIP ADE+LW + S R++ + +HSSE+ SR E+R D DEG PGVD S SS+PPRYGNYDS S R + + RS E+GRRSP+VYEDF S R SP+ + E ETDERW+ S LD Sbjct: 271 RASKRKLEELLQQWSEWHVQRGSSSQDLNEVLESGEETYFPALCVGTEKSSAVSFWIENQTKKQLNNDLISSDSDSVPLYDRGFAIGLTSTDGPSNVEGGLEIVNEAARCFNCGSYSHALKECPKPRNNAAVNNARKQH-KSKRNQNAGSRNGTRYYQSSSGGKYEGLKPGSLDAETRRLLGLGELDPPPWLNRMRELGYPPGYLDPDDEDQPSGIIIFADGDIKDEQEDGEIIE-TENPDPPRKMAVEFPGINAPIPENADERLWE-TGPSSYNSFRNRPFRKSDHSSETISRWHHHEQRGSRDSIDEGPPGVDPVFSPSSFPPRYGNYDS-----SYSSDSLRGSTASLPRSRSEKGRRSPVVYEDFASHSSSPFSSLNKRSSPKDNDSDRLESETDERWNYSRLD 670
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: U5FMW3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s14060g PE=4 SV=1) HSP 1 Score: 390.578 bits (1002), Expect = 4.150e-125 Identity = 211/329 (64.13%), Postives = 248/329 (75.38%), Query Frame = -2 Query: 526 RASKQKLEELLQKWSEWQAEHGSSLQENELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAP-DEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHXXXXXXX--XXXXRYFSDYEDEGVPGVDSRVS---SSYPPRYG 1494 R+ KQKLEELLQ+WSEW A+ SS +E+ +SGE TYFPALRVG +K SAVSFWI++Q R D + I N VPLYDRG+ +GLTSAD N+EGGLEI D A+RCFNCG+Y+HSLK+CPKPRDN AVNNARKQH K KRNQ+++SRN TRYYQ+S GGKYD LKPG L ETRQLLGLGE DPPPWLNRMRE+GYPPGYL P DED+PSGITI+ D +V+E QEDGEI E PEP KM+VEFPGINAPIP A+++ W S S R +S HR NHSSE+ R E+R + D+ ++G PGVD S SSYPPRYG Sbjct: 195 RSGKQKLEELLQQWSEWHAQQNSSHDSDEMLQSGEDTYFPALRVGMEKSSAVSFWIENQARKQQDNDLILQHSNFVPLYDRGYVLGLTSADGPINVEGGLEIVDAAARCFNCGAYNHSLKECPKPRDNAAVNNARKQH-KFKRNQNSSSRNPTRYYQSSSGGKYDGLKPGSLDTETRQLLGLGELDPPPWLNRMRELGYPPGYLDPDDEDQPSGITIFDDGDVEEEQEDGEIME-TDHPEPPRKMSVEFPGINAPIPENANQRFWE-VGPSSSDPFRHRSRHRSNHSSEATGRWHHHEQRQYRDFINDGPPGVDPVFSPSMSSYPPRYG 520
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_XENLA (Zinc finger CCHC domain-containing protein 8 OS=Xenopus laevis GN=zcchc8 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 4.347e-21 Identity = 65/189 (34.39%), Postives = 97/189 (51.32%), Query Frame = -2 Query: 727 VPLYDRGFAMGLTSADASSNLEGGLEIKDEASR----CFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADAEVDEGQEDGEI----AEMVQQPEPRMKMTVEFPGINAPIP 1269 +P Y + F + S D G EI+ +A R CFNCGS H ++ CPKPRD +N RK+ + A ++N RY+ ++ KPGV+ E ++ LG+ + + PP++ RMRE+GYPPG+L E E SG+++Y D + DGEI E + + V +PG N P Sbjct: 186 IPKYQQVFTQ-IVSLD-------GQEIQVKAKRPKPCCFNCGSEEHQMRDCPKPRDQAHINMKRKEFLDA--CGEAGNQNQQRYHAEEVEERFGKYKPGVISEELQEALGIMDKNLPPFIYRMRELGYPPGWLKEAELENSGLSLY-DGKERLDASDGEIEDRDTEAKKHVSYDVSKLVNYPGFNISAP 363
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_CHICK (Zinc finger CCHC domain-containing protein 8 OS=Gallus gallus GN=ZCCHC8 PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.350e-18 Identity = 57/184 (30.98%), Postives = 95/184 (51.63%), Query Frame = -2 Query: 727 VPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPR---MKMTVEFPGINAPIP 1269 +P Y + F+ L S D E ++ K S CFNCGS H +K CPKPR+ ++ RK+ ++ +++ RY+ ++ KPGV+ E + LG+ PP++ RMR++GYPPG+L E E SG+ +Y + +E +++G + QP+ + + +PG N P Sbjct: 99 IPKYQQVFSQIL-SLDGQ---EIQVKPKRPKSHCFNCGSEEHQIKDCPKPRNAARISEKRKEFMEA-YGEASNQNFQQRYHAEEVEERFGKFKPGVISGELQDALGVTAKSLPPFIYRMRQLGYPPGWLKEAEMEHSGLALYDGKDDNETEDEGYL-----QPKHVTYDVSKLINYPGFNISTP 272
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_PONAB (Zinc finger CCHC domain-containing protein 8 OS=Pongo abelii GN=ZCCHC8 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 6.524e-18 Identity = 55/165 (33.33%), Postives = 88/165 (53.33%), Query Frame = -2 Query: 727 GLEIKDEASR----CFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRN-ATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMT--VEFPGINAPIP 1200 G EI+ +A R CFNCGS H +K CP PR+ ++ RK++ + A ++N RY+ ++ KPGV+ E + LG+ + PP++ RMR++GYPPG+L E E SG+ +Y + +G+ E+ E+ Q ++ V +PG N P Sbjct: 213 GQEIQVKAKRPKPHCFNCGSEEHQMKDCPMPRNAARISEKRKEYMDA--CGEANNQNFQQRYHAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWLKEAELENSGLALYDGKDGTDGE--TEVGEIQQNKSVTYDLSKLVNYPGFNISTP 373
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_HUMAN (Zinc finger CCHC domain-containing protein 8 OS=Homo sapiens GN=ZCCHC8 PE=1 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 6.784e-18 Identity = 53/164 (32.32%), Postives = 86/164 (52.44%), Query Frame = -2 Query: 727 GLEIKDEASR----CFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMT--VEFPGINAPIP 1200 G EI+ +A R CFNCGS H +K CP PR+ ++ RK++ + ++ RY+ ++ KPGV+ E + LG+ + PP++ RMR++GYPPG+L E E SG+ +Y + +G + E+ E+ Q ++ V +PG N P Sbjct: 215 GQEIQVKAKRPKPHCFNCGSEEHQMKDCPMPRNAARISEKRKEYMDAC-GEANNQNFQQRYHAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWLKEAELENSGLALYDGKDGTDG--ETEVGEIQQNKSVTYDLSKLVNYPGFNISTP 375
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_MOUSE (Zinc finger CCHC domain-containing protein 8 OS=Mus musculus GN=Zcchc8 PE=2 SV=3) HSP 1 Score: 90.1225 bits (222), Expect = 9.519e-18 Identity = 55/163 (33.74%), Postives = 85/163 (52.15%), Query Frame = -2 Query: 727 GLEIKDEASR----CFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIY-ADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIP 1200 G E++ +A R CFNCGS H +K+CP PR+ ++ RK++ + S S RY+ ++ KPGV+ E + LG+ + PP++ RMR++GYPPG+L E E SG+ +Y + + D E GEI + + V +PG N P Sbjct: 218 GQEMQVKAKRPKPHCFNCGSEEHQMKECPMPRNAARISEKRKEYMDACGEASGQSFQ-QRYHAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWLKEAELENSGLALYDGNDDADGETETGEIQN--KNVTYDLSKLVNYPGFNISTP 377
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_DROME (Zinc finger CCHC domain-containing protein 8 homolog OS=Drosophila melanogaster GN=CG4622 PE=1 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 1.478e-13 Identity = 47/149 (31.54%), Postives = 76/149 (51.01%), Query Frame = -2 Query: 736 SRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIY-AD-AEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINA 1176 S CFNCG HSL+ C KPR+N + ARK+ + RY+ +++ ++ ++PG + +TR +G P RMR +GYPP +L + + SGI ++ AD +EV + E+ +E + + VE+PG N Sbjct: 183 SSCFNCGDTEHSLRDCTKPRNNSRITRARKK----------MTSRTERYHVDTE-QRFGHIRPGKISTKTRHAMGYSRGQLPFIFYRMRVLGYPPAWLEEAKVQSSGIALFNADGSEVTKSDEEEGESETFKYD---VNKIVEYPGFNV 317 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 6
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0005152 ID=g.arboreum_cottongen_reftransV1_0005152; Name=g.arboreum_cottongen_reftransV1_0005152; organism=Gossypium arboreum; type=contig; length=1495bpback to top |