g.arboreum_cottongen_reftransV1_0000282, g.arboreum_cottongen_reftransV1_0000282 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0000282
Unique Nameg.arboreum_cottongen_reftransV1_0000282
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length504
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr9chromosomeg.arboreum_cottongen_reftransV1_0000282:1..504 .
Chr9:2703187..2705311 -		n/a
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000282 vs. ExPASy TrEMBL
Match: A0A0D2UW67_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G204400 PE=4 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 1.209e-103
Identity = 162/167 (97.01%), Postives = 165/167 (98.80%), Query Frame = 2 
Query:    2 KPIGWQGSSKLELLKLRVDGYDWSTPFSVSNEGVMRVSLKNGNGSDQLFFKVEVRSGTKSSRYEVIFRPNSSSSPYRIENRSIFLPIRCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHLLEILVDGTDPSRSEKYDIDEIADHLPVDVTGPARALRITILKEEKIN 502
            KPIGWQGSSKLELLKLRVDGYDWSTPFSVSNEGVMRVSLKNGNGSDQLFFKVEVRSGTKSSRYEVIFR NSSSSPYRIENRSIFLPIRCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHL+EIL DGTDPSRSEKYDIDEIADHLPVDVTGPARALR+TILKEEK+N
Sbjct: 3466 KPIGWQGSSKLELLKLRVDGYDWSTPFSVSNEGVMRVSLKNGNGSDQLFFKVEVRSGTKSSRYEVIFRHNSSSSPYRIENRSIFLPIRCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHLMEILADGTDPSRSEKYDIDEIADHLPVDVTGPARALRVTILKEEKLN 3632
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000282 vs. ExPASy TrEMBL
Match: A0A0D2UVT8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G204400 PE=4 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.242e-103
Identity = 162/167 (97.01%), Postives = 165/167 (98.80%), Query Frame = 2 
Query:    2 KPIGWQGSSKLELLKLRVDGYDWSTPFSVSNEGVMRVSLKNGNGSDQLFFKVEVRSGTKSSRYEVIFRPNSSSSPYRIENRSIFLPIRCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHLLEILVDGTDPSRSEKYDIDEIADHLPVDVTGPARALRITILKEEKIN 502
            KPIGWQGSSKLELLKLRVDGYDWSTPFSVSNEGVMRVSLKNGNGSDQLFFKVEVRSGTKSSRYEVIFR NSSSSPYRIENRSIFLPIRCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHL+EIL DGTDPSRSEKYDIDEIADHLPVDVTGPARALR+TILKEEK+N
Sbjct: 3468 KPIGWQGSSKLELLKLRVDGYDWSTPFSVSNEGVMRVSLKNGNGSDQLFFKVEVRSGTKSSRYEVIFRHNSSSSPYRIENRSIFLPIRCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHLMEILADGTDPSRSEKYDIDEIADHLPVDVTGPARALRVTILKEEKLN 3634
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000282 vs. ExPASy TrEMBL
Match: A0A0D2RQE4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G204400 PE=4 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.242e-103
Identity = 162/167 (97.01%), Postives = 165/167 (98.80%), Query Frame = 2 
Query:    2 KPIGWQGSSKLELLKLRVDGYDWSTPFSVSNEGVMRVSLKNGNGSDQLFFKVEVRSGTKSSRYEVIFRPNSSSSPYRIENRSIFLPIRCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHLLEILVDGTDPSRSEKYDIDEIADHLPVDVTGPARALRITILKEEKIN 502
            KPIGWQGSSKLELLKLRVDGYDWSTPFSVSNEGVMRVSLKNGNGSDQLFFKVEVRSGTKSSRYEVIFR NSSSSPYRIENRSIFLPIRCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHL+EIL DGTDPSRSEKYDIDEIADHLPVDVTGPARALR+TILKEEK+N
Sbjct: 3469 KPIGWQGSSKLELLKLRVDGYDWSTPFSVSNEGVMRVSLKNGNGSDQLFFKVEVRSGTKSSRYEVIFRHNSSSSPYRIENRSIFLPIRCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHLMEILADGTDPSRSEKYDIDEIADHLPVDVTGPARALRVTILKEEKLN 3635
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000282 vs. ExPASy TrEMBL
Match: A0A0D2VPK8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G204400 PE=4 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.262e-103
Identity = 162/167 (97.01%), Postives = 165/167 (98.80%), Query Frame = 2 
Query:    2 KPIGWQGSSKLELLKLRVDGYDWSTPFSVSNEGVMRVSLKNGNGSDQLFFKVEVRSGTKSSRYEVIFRPNSSSSPYRIENRSIFLPIRCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHLLEILVDGTDPSRSEKYDIDEIADHLPVDVTGPARALRITILKEEKIN 502
            KPIGWQGSSKLELLKLRVDGYDWSTPFSVSNEGVMRVSLKNGNGSDQLFFKVEVRSGTKSSRYEVIFR NSSSSPYRIENRSIFLPIRCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHL+EIL DGTDPSRSEKYDIDEIADHLPVDVTGPARALR+TILKEEK+N
Sbjct: 3468 KPIGWQGSSKLELLKLRVDGYDWSTPFSVSNEGVMRVSLKNGNGSDQLFFKVEVRSGTKSSRYEVIFRHNSSSSPYRIENRSIFLPIRCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHLMEILADGTDPSRSEKYDIDEIADHLPVDVTGPARALRVTILKEEKLN 3634
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000282 vs. ExPASy TrEMBL
Match: A0A0D2TB22_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G204400 PE=4 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.350e-103
Identity = 162/167 (97.01%), Postives = 165/167 (98.80%), Query Frame = 2 
Query:    2 KPIGWQGSSKLELLKLRVDGYDWSTPFSVSNEGVMRVSLKNGNGSDQLFFKVEVRSGTKSSRYEVIFRPNSSSSPYRIENRSIFLPIRCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHLLEILVDGTDPSRSEKYDIDEIADHLPVDVTGPARALRITILKEEKIN 502
            KPIGWQGSSKLELLKLRVDGYDWSTPFSVSNEGVMRVSLKNGNGSDQLFFKVEVRSGTKSSRYEVIFR NSSSSPYRIENRSIFLPIRCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHL+EIL DGTDPSRSEKYDIDEIADHLPVDVTGPARALR+TILKEEK+N
Sbjct: 3468 KPIGWQGSSKLELLKLRVDGYDWSTPFSVSNEGVMRVSLKNGNGSDQLFFKVEVRSGTKSSRYEVIFRHNSSSSPYRIENRSIFLPIRCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHLMEILADGTDPSRSEKYDIDEIADHLPVDVTGPARALRVTILKEEKLN 3634
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000282 vs. ExPASy TrEMBL
Match: A0A0D2UW70_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G204400 PE=4 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.492e-103
Identity = 162/167 (97.01%), Postives = 165/167 (98.80%), Query Frame = 2 
Query:    2 KPIGWQGSSKLELLKLRVDGYDWSTPFSVSNEGVMRVSLKNGNGSDQLFFKVEVRSGTKSSRYEVIFRPNSSSSPYRIENRSIFLPIRCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHLLEILVDGTDPSRSEKYDIDEIADHLPVDVTGPARALRITILKEEKIN 502
            KPIGWQGSSKLELLKLRVDGYDWSTPFSVSNEGVMRVSLKNGNGSDQLFFKVEVRSGTKSSRYEVIFR NSSSSPYRIENRSIFLPIRCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHL+EIL DGTDPSRSEKYDIDEIADHLPVDVTGPARALR+TILKEEK+N
Sbjct: 3449 KPIGWQGSSKLELLKLRVDGYDWSTPFSVSNEGVMRVSLKNGNGSDQLFFKVEVRSGTKSSRYEVIFRHNSSSSPYRIENRSIFLPIRCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHLMEILADGTDPSRSEKYDIDEIADHLPVDVTGPARALRVTILKEEKLN 3615
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000282 vs. ExPASy TrEMBL
Match: A0A061EP79_THECC (Calcium-dependent lipid-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_021446 PE=4 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 7.166e-91
Identity = 146/163 (89.57%), Postives = 152/163 (93.25%), Query Frame = 2 
Query:   14 WQGSSKLELLKLRVDGYDWSTPFSVSNEGVMRVSLKNGNGSDQLFFKVEVRSGTKSSRYEVIFRPNSSSSPYRIENRSIFLPIRCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHLLEILVDGTDPSRSEKYDIDEIADHLPVDVTGPARALRITILKEEKIN 502
            WQ SSK+ELLKL VDGY WSTPFSVS+EGVMRVSLKN  GSDQL FKVEVRSGTKSSRYEVIFRPNSSSSPYRIENRSIFLP+RCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHLLEIL DGTDPSRSE Y+IDEI DH PVDVT PARALR+TILKEEK+N
Sbjct: 3480 WQSSSKIELLKLWVDGYKWSTPFSVSSEGVMRVSLKNDTGSDQLLFKVEVRSGTKSSRYEVIFRPNSSSSPYRIENRSIFLPLRCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHLLEILADGTDPSRSEIYNIDEIFDHQPVDVTRPARALRVTILKEEKVN 3642
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000282 vs. ExPASy TrEMBL
Match: A0A061EPR6_THECC (Calcium-dependent lipid-binding family protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_021446 PE=4 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 8.422e-91
Identity = 146/163 (89.57%), Postives = 152/163 (93.25%), Query Frame = 2 
Query:   14 WQGSSKLELLKLRVDGYDWSTPFSVSNEGVMRVSLKNGNGSDQLFFKVEVRSGTKSSRYEVIFRPNSSSSPYRIENRSIFLPIRCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHLLEILVDGTDPSRSEKYDIDEIADHLPVDVTGPARALRITILKEEKIN 502
            WQ SSK+ELLKL VDGY WSTPFSVS+EGVMRVSLKN  GSDQL FKVEVRSGTKSSRYEVIFRPNSSSSPYRIENRSIFLP+RCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHLLEIL DGTDPSRSE Y+IDEI DH PVDVT PARALR+TILKEEK+N
Sbjct: 3356 WQSSSKIELLKLWVDGYKWSTPFSVSSEGVMRVSLKNDTGSDQLLFKVEVRSGTKSSRYEVIFRPNSSSSPYRIENRSIFLPLRCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHLLEILADGTDPSRSEIYNIDEIFDHQPVDVTRPARALRVTILKEEKVN 3518
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000282 vs. ExPASy TrEMBL
Match: A0A061EQ98_THECC (Calcium-dependent lipid-binding family protein isoform 4 OS=Theobroma cacao GN=TCM_021446 PE=4 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 9.690e-91
Identity = 146/163 (89.57%), Postives = 152/163 (93.25%), Query Frame = 2 
Query:   14 WQGSSKLELLKLRVDGYDWSTPFSVSNEGVMRVSLKNGNGSDQLFFKVEVRSGTKSSRYEVIFRPNSSSSPYRIENRSIFLPIRCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHLLEILVDGTDPSRSEKYDIDEIADHLPVDVTGPARALRITILKEEKIN 502
            WQ SSK+ELLKL VDGY WSTPFSVS+EGVMRVSLKN  GSDQL FKVEVRSGTKSSRYEVIFRPNSSSSPYRIENRSIFLP+RCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHLLEIL DGTDPSRSE Y+IDEI DH PVDVT PARALR+TILKEEK+N
Sbjct: 3480 WQSSSKIELLKLWVDGYKWSTPFSVSSEGVMRVSLKNDTGSDQLLFKVEVRSGTKSSRYEVIFRPNSSSSPYRIENRSIFLPLRCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHLLEILADGTDPSRSEIYNIDEIFDHQPVDVTRPARALRVTILKEEKVN 3642
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000282 vs. ExPASy TrEMBL
Match: A0A061EX48_THECC (Calcium-dependent lipid-binding family protein isoform 3 OS=Theobroma cacao GN=TCM_021446 PE=4 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 1.187e-90
Identity = 146/163 (89.57%), Postives = 152/163 (93.25%), Query Frame = 2 
Query:   14 WQGSSKLELLKLRVDGYDWSTPFSVSNEGVMRVSLKNGNGSDQLFFKVEVRSGTKSSRYEVIFRPNSSSSPYRIENRSIFLPIRCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHLLEILVDGTDPSRSEKYDIDEIADHLPVDVTGPARALRITILKEEKIN 502
            WQ SSK+ELLKL VDGY WSTPFSVS+EGVMRVSLKN  GSDQL FKVEVRSGTKSSRYEVIFRPNSSSSPYRIENRSIFLP+RCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHLLEIL DGTDPSRSE Y+IDEI DH PVDVT PARALR+TILKEEK+N
Sbjct: 3356 WQSSSKIELLKLWVDGYKWSTPFSVSSEGVMRVSLKNDTGSDQLLFKVEVRSGTKSSRYEVIFRPNSSSSPYRIENRSIFLPLRCRQVDGTSDSWHFLLPNTAVSFLWEDLGRQHLLEILADGTDPSRSEIYNIDEIFDHQPVDVTRPARALRVTILKEEKVN 3518
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000282 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2UW67_GOSRA1.209e-10397.01Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2UVT8_GOSRA1.242e-10397.01Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2RQE4_GOSRA1.242e-10397.01Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2VPK8_GOSRA1.262e-10397.01Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2TB22_GOSRA1.350e-10397.01Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2UW70_GOSRA1.492e-10397.01Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061EP79_THECC7.166e-9189.57Calcium-dependent lipid-binding family protein iso... [more]
A0A061EPR6_THECC8.422e-9189.57Calcium-dependent lipid-binding family protein iso... [more]
A0A061EQ98_THECC9.690e-9189.57Calcium-dependent lipid-binding family protein iso... [more]
A0A061EX48_THECC1.187e-9089.57Calcium-dependent lipid-binding family protein iso... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0000282 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009543Vacuolar protein sorting-associated protein 13, SHR-binding domainPFAMPF06650SHR-BDcoord: 4..79
e-value: 5.4E-6
score: 25.8
IPR026847Vacuolar protein sorting-associated protein 13PANTHERPTHR16166VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13coord: 1..155
NoneNo IPR availablePANTHERPTHR16166:SF93PROTEIN T08G11.1, ISOFORM Acoord: 1..155

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0000282 ID=g.arboreum_cottongen_reftransV1_0000282; Name=g.arboreum_cottongen_reftransV1_0000282; organism=Gossypium arboreum; type=contig; length=504bp
AAAACCAATTGGGTGGCAGGGTTCTTCAAAACTTGAACTGTTGAAGTTGC
GTGTAGATGGATATGACTGGAGTACACCGTTCAGTGTTTCTAATGAAGGT
GTGATGCGTGTTTCTTTGAAAAATGGCAATGGAAGCGATCAGTTGTTTTT
TAAGGTTGAAGTTAGGAGTGGAACAAAAAGCTCACGCTACGAAGTTATTT
TCCGCCCTAATTCCTCATCCAGTCCTTACAGGATTGAAAATCGTTCCATC
TTTTTACCAATTCGCTGCCGGCAAGTTGATGGTACCAGTGATTCATGGCA
CTTCCTTCTTCCCAATACAGCTGTTTCTTTCTTATGGGAAGATCTTGGTC
GACAGCATTTGTTGGAAATCCTTGTAGATGGGACTGACCCATCAAGGTCA
GAAAAGTATGACATTGATGAGATTGCTGATCACCTACCAGTTGATGTGAC
TGGCCCTGCCAGAGCTTTACGGATTACCATACTAAAAGAAGAAAAAATAA
ATGT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR009543VPS13_VAB
IPR026847VPS13