g.arboreum_cottongen_reftransV1_0011194, g.arboreum_cottongen_reftransV1_0011194 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0011194
Unique Nameg.arboreum_cottongen_reftransV1_0011194
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length325
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
Chr12chromosomeg.arboreum_cottongen_reftransV1_0011194:1..325 .
Chr12:122239449..122239773 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy TrEMBL
Match: A0A0D2V7R6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G176100 PE=4 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 6.582e-73
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 2
Query:    2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325
            LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYF EAPGRMAAIYSA
Sbjct:  117 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFPEAPGRMAAIYSA 224          
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy TrEMBL
Match: A0A0D2RMQ2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G166800 PE=4 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 3.302e-62
Identity = 90/108 (83.33%), Postives = 102/108 (94.44%), Query Frame = 2
Query:    2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325
            LNP GNT+FLEEDPKW+Q+VLKDAP L+AHAVKYRT+LK+A+ LL HY+SEP+C+PSKAYLRGN KC+LALTGFPDEFYDTEWDLIMIDAPRGYF EAPGRMAAI+SA
Sbjct:  117 LNPNGNTIFLEEDPKWVQSVLKDAPILQAHAVKYRTELKEADDLLIHYRSEPSCYPSKAYLRGNEKCRLALTGFPDEFYDTEWDLIMIDAPRGYFPEAPGRMAAIFSA 224          
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy TrEMBL
Match: A0A0D2U4E2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G165400 PE=4 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.214e-61
Identity = 91/108 (84.26%), Postives = 101/108 (93.52%), Query Frame = 2
Query:    2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325
            LNP GNT+FLEEDPKW+QTVLKDAP L AH VKYRTQLK+A++LL+HY+SEP+C PS+AYLRGN KCKLALTGFPDEFYDTEWDLIMIDAPRGYF EAPGRMAAI+SA
Sbjct:  118 LNPNGNTIFLEEDPKWVQTVLKDAPVLHAHPVKYRTQLKEADALLSHYRSEPSCFPSEAYLRGNDKCKLALTGFPDEFYDTEWDLIMIDAPRGYFPEAPGRMAAIFSA 225          
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy TrEMBL
Match: A0A061EC29_THECC (Cell wall integrity and stress response component 1 OS=Theobroma cacao GN=TCM_008810 PE=4 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.001e-60
Identity = 89/108 (82.41%), Postives = 101/108 (93.52%), Query Frame = 2
Query:    2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325
            LNP G T+FLEEDPKW+QTVLKDAP+L AHAVKYRTQL+QA+ LL+HY+SEP+C PS+AYLRGN KCKLALTGFPDEFY+T+WDLIMIDAPRGYFA APGRMAAI+SA
Sbjct:  117 LNPRGTTIFLEEDPKWVQTVLKDAPNLHAHAVKYRTQLQQADDLLSHYQSEPSCSPSEAYLRGNEKCKLALTGFPDEFYETQWDLIMIDAPRGYFAVAPGRMAAIFSA 224          
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy TrEMBL
Match: I3SRT6_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 4.488e-57
Identity = 82/108 (75.93%), Postives = 94/108 (87.04%), Query Frame = 2
Query:    2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325
             NPGGNTLFLEEDPKW+QTVLKDAP LRAH V+YRTQL++A+ L++ Y+ EP C PSKA+LRGN  CKLAL   PDE YDTEWDLIMIDAP+GYFAEAPGRMAA++SA
Sbjct:    5 FNPGGNTLFLEEDPKWVQTVLKDAPGLRAHTVRYRTQLREASKLISSYRKEPMCSPSKAFLRGNKACKLALENLPDEVYDTEWDLIMIDAPKGYFAEAPGRMAAVFSA 112          
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy TrEMBL
Match: B9RME0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1079920 PE=4 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 8.508e-57
Identity = 86/108 (79.63%), Postives = 96/108 (88.89%), Query Frame = 2
Query:    2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325
            LNP G TLFLEEDPKWIQTVL +AP+L AHAV+YRTQL++AN LL+ Y+SEP C PSKAYLRGN++CKLALTG PDE YD EWDLIMIDAPRGYF EAPGRMAAI+SA
Sbjct:  114 LNPHGTTLFLEEDPKWIQTVLANAPTLHAHAVQYRTQLQEANQLLSSYRSEPYCLPSKAYLRGNYRCKLALTGLPDEVYDKEWDLIMIDAPRGYFNEAPGRMAAIFSA 221          
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy TrEMBL
Match: B9GZQ4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s17080g PE=4 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.090e-56
Identity = 85/108 (78.70%), Postives = 95/108 (87.96%), Query Frame = 2
Query:    2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325
            LNP G TLFLEEDPKW+QT++K AP+L AH V+YRTQL++ANSLL  Y+SEP C PSKAYLRGN+KCKLALTG PDE YD EWDLIMIDAPRGYF EAPGRMAAI+SA
Sbjct:  114 LNPHGTTLFLEEDPKWVQTIVKKAPTLNAHTVQYRTQLQEANSLLKTYRSEPLCSPSKAYLRGNYKCKLALTGLPDEVYDKEWDLIMIDAPRGYFPEAPGRMAAIFSA 221          
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy TrEMBL
Match: G7JBY4_MEDTR (Polysaccharide biosynthesis protein OS=Medicago truncatula GN=MTR_3g085270 PE=4 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 3.326e-56
Identity = 82/108 (75.93%), Postives = 94/108 (87.04%), Query Frame = 2
Query:    2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325
             NPGGNTLFLEEDPKW+QTVLKDAP LRAH V+YRTQL++A+ L++ Y+ EP C PSKA+LRGN  CKLAL   PDE YDTEWDLIMIDAP+GYFAEAPGRMAA++SA
Sbjct:  117 FNPGGNTLFLEEDPKWVQTVLKDAPGLRAHTVRYRTQLREASKLISSYRKEPMCSPSKAFLRGNKACKLALENLPDEVYDTEWDLIMIDAPKGYFAEAPGRMAAVFSA 224          
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy TrEMBL
Match: Q8LEW4_ARATH (Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.291e-55
Identity = 83/108 (76.85%), Postives = 95/108 (87.96%), Query Frame = 2
Query:    2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325
            LNP G TLFLEED +W Q V KD+P LRAH V+YRTQL+QA+SLL  YK+EPNC P+K+YLRGN KCKLALTG PDEFYDTEWDL+M+DAP+GYFAEAPGRMAAI+SA
Sbjct:  115 LNPRGKTLFLEEDLEWFQKVTKDSPFLRAHHVRYRTQLQQADSLLRSYKTEPNCFPAKSYLRGNEKCKLALTGLPDEFYDTEWDLLMVDAPKGYFAEAPGRMAAIFSA 222          
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy TrEMBL
Match: A0A0D2Q8H3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G183200 PE=4 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.014e-54
Identity = 82/108 (75.93%), Postives = 96/108 (88.89%), Query Frame = 2
Query:    2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325
            LNP G T F+EEDPKW++ VLK AP L A+ VKYRT+LK+A+ LL+HY+SEP+C PSKAYLRGN +C+LALTGFP+EFYDTEWDLIMIDAPRGYF EAPGRMAAI+SA
Sbjct:  119 LNPHGKTTFIEEDPKWVEIVLKTAPDLHAYPVKYRTELKEADDLLSHYRSEPSCFPSKAYLRGNDQCRLALTGFPNEFYDTEWDLIMIDAPRGYFPEAPGRMAAIFSA 226          
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy Swiss-Prot
Match: GXM2_ARATH (Glucuronoxylan 4-O-methyltransferase 2 OS=Arabidopsis thaliana GN=GXM2 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.424e-28
Identity = 54/108 (50.00%), Postives = 74/108 (68.52%), Query Frame = 2
Query:    2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325
            LN GG TLFLEED  WI+TV K  P+L ++ V Y T++K +N L+   ++E +C         + KC L+L GFP + Y+T+WD+IM+DAP GY  EAPGRM+AIY+A
Sbjct:  116 LNHGGRTLFLEEDEAWIETVTKKFPNLESYHVVYDTKVKDSNKLMELKRTE-DCKAVSD--PRDSKCALSLKGFPADVYETQWDVIMVDAPTGYHDEAPGRMSAIYTA 220          
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy Swiss-Prot
Match: GXM3_ARATH (Glucuronoxylan 4-O-methyltransferase 3 OS=Arabidopsis thaliana GN=GXM3 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.349e-28
Identity = 55/108 (50.93%), Postives = 71/108 (65.74%), Query Frame = 2
Query:    2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325
            LN GG TLF+EED  WI  V K  P+L ++ V Y T++K ++ L+   +SE     S      N KC LAL  FP +FY+T+WDLIM+DAP GY  EAPGRM+AIY+A
Sbjct:  124 LNHGGRTLFIEEDQAWIAIVTKKFPNLESYHVVYDTKVKDSDKLMELGRSEECRSVSDPR---NSKCDLALKDFPADFYETKWDLIMVDAPTGYHEEAPGRMSAIYTA 228          
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy Swiss-Prot
Match: GXM1_ARATH (Glucuronoxylan 4-O-methyltransferase 1 OS=Arabidopsis thaliana GN=GXM1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.246e-25
Identity = 52/111 (46.85%), Postives = 71/111 (63.96%), Query Frame = 2
Query:    2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHK---CKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325
            LN GG T+FLEED  WI+ + +  P L ++ V Y +++ QA++L+   K  P C        G+ +   C+LAL G P E Y+T WDLIM+DAP GY+ EAPGRM AIY+A
Sbjct:  111 LNYGGRTVFLEEDEAWIKQIKRRFPMLESYHVTYDSKVNQADNLIEVGKG-PECTAI-----GDPRYSMCQLALKGLPAEIYETGWDLIMVDAPTGYYDEAPGRMTAIYTA 215          
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy Swiss-Prot
Match: IX15L_ARATH (Protein IRX15-LIKE OS=Arabidopsis thaliana GN=IRX15-L PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.242e-16
Identity = 37/110 (33.64%), Postives = 62/110 (56.36%), Query Frame = 2
Query:    2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYK--SEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325
            LN  G T+F+EE+  +     +  P +    V+Y T+ ++A  L++  K  +   C P +  L  +  CKL L   P+  YD +WD+I++D PRG   + PGRM++I++A
Sbjct:  134 LNHNGRTVFIEENRYYAAYFEEIHPEIEVFDVQYTTKAREARELVSAVKEAARNECRPVQNLLFSD--CKLGLNDLPNHVYDVDWDVILVDGPRGDGGDVPGRMSSIFTA 241          
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy Swiss-Prot
Match: IRX15_ARATH (Protein IRREGULAR XYLEM 15 OS=Arabidopsis thaliana GN=IRX15 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.973e-15
Identity = 38/110 (34.55%), Postives = 58/110 (52.73%), Query Frame = 2
Query:    2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPN--CHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325
            LN  G T+F+EE+  +     +  P +    V+Y T+  +A  L+   K      C P +  L  +  CKL L   P+  YD +WD+I +D PRG   E PGRM++I++A
Sbjct:  141 LNHNGRTVFIEENRYYAAYFEEIHPEIDVFDVQYTTKAHEAGELVTAAKEAAGNECRPVQNLLFSD--CKLGLNDLPNHVYDVDWDVIFVDGPRGDAHEGPGRMSSIFTA 248          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2V7R6_GOSRA6.582e-7399.07Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2RMQ2_GOSRA3.302e-6283.33Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2U4E2_GOSRA1.214e-6184.26Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061EC29_THECC1.001e-6082.41Cell wall integrity and stress response component ... [more]
I3SRT6_MEDTR4.488e-5775.93Uncharacterized protein OS=Medicago truncatula PE=... [more]
B9RME0_RICCO8.508e-5779.63Putative uncharacterized protein OS=Ricinus commun... [more]
B9GZQ4_POPTR1.090e-5678.70Uncharacterized protein OS=Populus trichocarpa GN=... [more]
G7JBY4_MEDTR3.326e-5675.93Polysaccharide biosynthesis protein OS=Medicago tr... [more]
Q8LEW4_ARATH4.291e-5576.85Putative uncharacterized protein OS=Arabidopsis th... [more]
A0A0D2Q8H3_GOSRA1.014e-5475.93Uncharacterized protein OS=Gossypium raimondii GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GXM2_ARATH1.424e-2850.00Glucuronoxylan 4-O-methyltransferase 2 OS=Arabidop... [more]
GXM3_ARATH4.349e-2850.93Glucuronoxylan 4-O-methyltransferase 3 OS=Arabidop... [more]
GXM1_ARATH3.246e-2546.85Glucuronoxylan 4-O-methyltransferase 1 OS=Arabidop... [more]
IX15L_ARATH1.242e-1633.64Protein IRX15-LIKE OS=Arabidopsis thaliana GN=IRX1... [more]
IRX15_ARATH2.973e-1534.55Protein IRREGULAR XYLEM 15 OS=Arabidopsis thaliana... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 24..44
NoneNo IPR availablePANTHERPTHR31444:SF1SUBFAMILY NOT NAMEDcoord: 1..101
NoneNo IPR availablePANTHERPTHR31444FAMILY NOT NAMEDcoord: 1..101
IPR021148Polysaccharide biosynthesis domainPFAMPF04669Polysacc_synt_4coord: 2..101
e-value: 3.7E-36
score: 124.3

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0011194 ID=g.arboreum_cottongen_reftransV1_0011194; Name=g.arboreum_cottongen_reftransV1_0011194; organism=Gossypium arboreum; type=contig; length=325bp
ACTTAACCCGGGAGGTAACACTTTGTTCCTCGAAGAAGATCCGAAATGGA
TCCAAACCGTTCTCAAAGATGCGCCGAGCCTCCGTGCACACGCCGTGAAG
TACCGTACTCAGCTCAAACAAGCCAACTCTCTGCTCGCGCATTACAAATC
GGAGCCGAACTGTCACCCTTCGAAAGCTTACTTGCGTGGCAACCATAAGT
GTAAGCTAGCCTTGACGGGATTTCCCGATGAGTTTTACGATACGGAGTGG
GATCTGATCATGATCGACGCACCGCGCGGGTATTTCGCGGAAGCTCCGGG
GAGGATGGCGGCTATATACTCGGCG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR021148Polysacc_synth_dom