g.arboreum_cottongen_reftransV1_0011194, g.arboreum_cottongen_reftransV1_0011194 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy TrEMBL
Match: A0A0D2V7R6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G176100 PE=4 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 6.582e-73 Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 2 Query: 2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYF EAPGRMAAIYSA Sbjct: 117 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFPEAPGRMAAIYSA 224
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy TrEMBL
Match: A0A0D2RMQ2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G166800 PE=4 SV=1) HSP 1 Score: 202.601 bits (514), Expect = 3.302e-62 Identity = 90/108 (83.33%), Postives = 102/108 (94.44%), Query Frame = 2 Query: 2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325 LNP GNT+FLEEDPKW+Q+VLKDAP L+AHAVKYRT+LK+A+ LL HY+SEP+C+PSKAYLRGN KC+LALTGFPDEFYDTEWDLIMIDAPRGYF EAPGRMAAI+SA Sbjct: 117 LNPNGNTIFLEEDPKWVQSVLKDAPILQAHAVKYRTELKEADDLLIHYRSEPSCYPSKAYLRGNEKCRLALTGFPDEFYDTEWDLIMIDAPRGYFPEAPGRMAAIFSA 224
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy TrEMBL
Match: A0A0D2U4E2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G165400 PE=4 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 1.214e-61 Identity = 91/108 (84.26%), Postives = 101/108 (93.52%), Query Frame = 2 Query: 2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325 LNP GNT+FLEEDPKW+QTVLKDAP L AH VKYRTQLK+A++LL+HY+SEP+C PS+AYLRGN KCKLALTGFPDEFYDTEWDLIMIDAPRGYF EAPGRMAAI+SA Sbjct: 118 LNPNGNTIFLEEDPKWVQTVLKDAPVLHAHPVKYRTQLKEADALLSHYRSEPSCFPSEAYLRGNDKCKLALTGFPDEFYDTEWDLIMIDAPRGYFPEAPGRMAAIFSA 225
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy TrEMBL
Match: A0A061EC29_THECC (Cell wall integrity and stress response component 1 OS=Theobroma cacao GN=TCM_008810 PE=4 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 1.001e-60 Identity = 89/108 (82.41%), Postives = 101/108 (93.52%), Query Frame = 2 Query: 2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325 LNP G T+FLEEDPKW+QTVLKDAP+L AHAVKYRTQL+QA+ LL+HY+SEP+C PS+AYLRGN KCKLALTGFPDEFY+T+WDLIMIDAPRGYFA APGRMAAI+SA Sbjct: 117 LNPRGTTIFLEEDPKWVQTVLKDAPNLHAHAVKYRTQLQQADDLLSHYQSEPSCSPSEAYLRGNEKCKLALTGFPDEFYETQWDLIMIDAPRGYFAVAPGRMAAIFSA 224
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy TrEMBL
Match: I3SRT6_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 4.488e-57 Identity = 82/108 (75.93%), Postives = 94/108 (87.04%), Query Frame = 2 Query: 2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325 NPGGNTLFLEEDPKW+QTVLKDAP LRAH V+YRTQL++A+ L++ Y+ EP C PSKA+LRGN CKLAL PDE YDTEWDLIMIDAP+GYFAEAPGRMAA++SA Sbjct: 5 FNPGGNTLFLEEDPKWVQTVLKDAPGLRAHTVRYRTQLREASKLISSYRKEPMCSPSKAFLRGNKACKLALENLPDEVYDTEWDLIMIDAPKGYFAEAPGRMAAVFSA 112
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy TrEMBL
Match: B9RME0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1079920 PE=4 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 8.508e-57 Identity = 86/108 (79.63%), Postives = 96/108 (88.89%), Query Frame = 2 Query: 2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325 LNP G TLFLEEDPKWIQTVL +AP+L AHAV+YRTQL++AN LL+ Y+SEP C PSKAYLRGN++CKLALTG PDE YD EWDLIMIDAPRGYF EAPGRMAAI+SA Sbjct: 114 LNPHGTTLFLEEDPKWIQTVLANAPTLHAHAVQYRTQLQEANQLLSSYRSEPYCLPSKAYLRGNYRCKLALTGLPDEVYDKEWDLIMIDAPRGYFNEAPGRMAAIFSA 221
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy TrEMBL
Match: B9GZQ4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s17080g PE=4 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 1.090e-56 Identity = 85/108 (78.70%), Postives = 95/108 (87.96%), Query Frame = 2 Query: 2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325 LNP G TLFLEEDPKW+QT++K AP+L AH V+YRTQL++ANSLL Y+SEP C PSKAYLRGN+KCKLALTG PDE YD EWDLIMIDAPRGYF EAPGRMAAI+SA Sbjct: 114 LNPHGTTLFLEEDPKWVQTIVKKAPTLNAHTVQYRTQLQEANSLLKTYRSEPLCSPSKAYLRGNYKCKLALTGLPDEVYDKEWDLIMIDAPRGYFPEAPGRMAAIFSA 221
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy TrEMBL
Match: G7JBY4_MEDTR (Polysaccharide biosynthesis protein OS=Medicago truncatula GN=MTR_3g085270 PE=4 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 3.326e-56 Identity = 82/108 (75.93%), Postives = 94/108 (87.04%), Query Frame = 2 Query: 2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325 NPGGNTLFLEEDPKW+QTVLKDAP LRAH V+YRTQL++A+ L++ Y+ EP C PSKA+LRGN CKLAL PDE YDTEWDLIMIDAP+GYFAEAPGRMAA++SA Sbjct: 117 FNPGGNTLFLEEDPKWVQTVLKDAPGLRAHTVRYRTQLREASKLISSYRKEPMCSPSKAFLRGNKACKLALENLPDEVYDTEWDLIMIDAPKGYFAEAPGRMAAVFSA 224
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy TrEMBL
Match: Q8LEW4_ARATH (Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 4.291e-55 Identity = 83/108 (76.85%), Postives = 95/108 (87.96%), Query Frame = 2 Query: 2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325 LNP G TLFLEED +W Q V KD+P LRAH V+YRTQL+QA+SLL YK+EPNC P+K+YLRGN KCKLALTG PDEFYDTEWDL+M+DAP+GYFAEAPGRMAAI+SA Sbjct: 115 LNPRGKTLFLEEDLEWFQKVTKDSPFLRAHHVRYRTQLQQADSLLRSYKTEPNCFPAKSYLRGNEKCKLALTGLPDEFYDTEWDLLMVDAPKGYFAEAPGRMAAIFSA 222
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy TrEMBL
Match: A0A0D2Q8H3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G183200 PE=4 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 1.014e-54 Identity = 82/108 (75.93%), Postives = 96/108 (88.89%), Query Frame = 2 Query: 2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325 LNP G T F+EEDPKW++ VLK AP L A+ VKYRT+LK+A+ LL+HY+SEP+C PSKAYLRGN +C+LALTGFP+EFYDTEWDLIMIDAPRGYF EAPGRMAAI+SA Sbjct: 119 LNPHGKTTFIEEDPKWVEIVLKTAPDLHAYPVKYRTELKEADDLLSHYRSEPSCFPSKAYLRGNDQCRLALTGFPNEFYDTEWDLIMIDAPRGYFPEAPGRMAAIFSA 226
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy Swiss-Prot
Match: GXM2_ARATH (Glucuronoxylan 4-O-methyltransferase 2 OS=Arabidopsis thaliana GN=GXM2 PE=1 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.424e-28 Identity = 54/108 (50.00%), Postives = 74/108 (68.52%), Query Frame = 2 Query: 2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325 LN GG TLFLEED WI+TV K P+L ++ V Y T++K +N L+ ++E +C + KC L+L GFP + Y+T+WD+IM+DAP GY EAPGRM+AIY+A Sbjct: 116 LNHGGRTLFLEEDEAWIETVTKKFPNLESYHVVYDTKVKDSNKLMELKRTE-DCKAVSD--PRDSKCALSLKGFPADVYETQWDVIMVDAPTGYHDEAPGRMSAIYTA 220
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy Swiss-Prot
Match: GXM3_ARATH (Glucuronoxylan 4-O-methyltransferase 3 OS=Arabidopsis thaliana GN=GXM3 PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 4.349e-28 Identity = 55/108 (50.93%), Postives = 71/108 (65.74%), Query Frame = 2 Query: 2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325 LN GG TLF+EED WI V K P+L ++ V Y T++K ++ L+ +SE S N KC LAL FP +FY+T+WDLIM+DAP GY EAPGRM+AIY+A Sbjct: 124 LNHGGRTLFIEEDQAWIAIVTKKFPNLESYHVVYDTKVKDSDKLMELGRSEECRSVSDPR---NSKCDLALKDFPADFYETKWDLIMVDAPTGYHEEAPGRMSAIYTA 228
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy Swiss-Prot
Match: GXM1_ARATH (Glucuronoxylan 4-O-methyltransferase 1 OS=Arabidopsis thaliana GN=GXM1 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 3.246e-25 Identity = 52/111 (46.85%), Postives = 71/111 (63.96%), Query Frame = 2 Query: 2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPNCHPSKAYLRGNHK---CKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325 LN GG T+FLEED WI+ + + P L ++ V Y +++ QA++L+ K P C G+ + C+LAL G P E Y+T WDLIM+DAP GY+ EAPGRM AIY+A Sbjct: 111 LNYGGRTVFLEEDEAWIKQIKRRFPMLESYHVTYDSKVNQADNLIEVGKG-PECTAI-----GDPRYSMCQLALKGLPAEIYETGWDLIMVDAPTGYYDEAPGRMTAIYTA 215
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy Swiss-Prot
Match: IX15L_ARATH (Protein IRX15-LIKE OS=Arabidopsis thaliana GN=IRX15-L PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.242e-16 Identity = 37/110 (33.64%), Postives = 62/110 (56.36%), Query Frame = 2 Query: 2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYK--SEPNCHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325 LN G T+F+EE+ + + P + V+Y T+ ++A L++ K + C P + L + CKL L P+ YD +WD+I++D PRG + PGRM++I++A Sbjct: 134 LNHNGRTVFIEENRYYAAYFEEIHPEIEVFDVQYTTKAREARELVSAVKEAARNECRPVQNLLFSD--CKLGLNDLPNHVYDVDWDVILVDGPRGDGGDVPGRMSSIFTA 241
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy Swiss-Prot
Match: IRX15_ARATH (Protein IRREGULAR XYLEM 15 OS=Arabidopsis thaliana GN=IRX15 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 2.973e-15 Identity = 38/110 (34.55%), Postives = 58/110 (52.73%), Query Frame = 2 Query: 2 LNPGGNTLFLEEDPKWIQTVLKDAPSLRAHAVKYRTQLKQANSLLAHYKSEPN--CHPSKAYLRGNHKCKLALTGFPDEFYDTEWDLIMIDAPRGYFAEAPGRMAAIYSA 325 LN G T+F+EE+ + + P + V+Y T+ +A L+ K C P + L + CKL L P+ YD +WD+I +D PRG E PGRM++I++A Sbjct: 141 LNHNGRTVFIEENRYYAAYFEEIHPEIDVFDVQYTTKAHEAGELVTAAKEAAGNECRPVQNLLFSD--CKLGLNDLPNHVYDVDWDVIFVDGPRGDAHEGPGRMSSIFTA 248 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0011194 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 5
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0011194 ID=g.arboreum_cottongen_reftransV1_0011194; Name=g.arboreum_cottongen_reftransV1_0011194; organism=Gossypium arboreum; type=contig; length=325bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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