g.arboreum_cottongen_reftransV1_0008858, g.arboreum_cottongen_reftransV1_0008858 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0008858
Unique Name	g.arboreum_cottongen_reftransV1_0008858
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	1111

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis
Chr13	chromosome	g.arboreum_cottongen_reftransV1_0008858:1..1111 . Chr13:107095170..107096547 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0008858 vs. ExPASy TrEMBL
Match: A0A0B0NIY1_GOSAR (Nudix hydrolase 4-like protein OS=Gossypium arboreum GN=F383_19188 PE=3 SV=1)

HSP 1 Score: 399.053 bits (1024), Expect = 3.180e-136
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = -2

Query:  445 MGGISGFLMKFPSLIHFLLSLLEKIPARLPMPIEKLVSRVSYPRTGRHLQRYNNRGFRLVVGCIPYRYRESEDAKSIEEAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIECKLGKWCYKSKRQSIYHEGHMFGLLVKQELDGWPEKNIRKREWVTVSKAREECPHLWMIEALEELVWR 1026
            MGGISGFLMKFPSLIHFLLSLLEKIPARLPMPIEKLVSRVSYPRTGRHLQRYNNRGFRLVVGCIPYRYRESEDAKSIEEAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIECKLGKWCYKSKRQSIYHEGHMFGLLVKQELDGWPEKNIRKREWVTVSKAREECPHLWMIEALEELVWR
Sbjct:    1 MGGISGFLMKFPSLIHFLLSLLEKIPARLPMPIEKLVSRVSYPRTGRHLQRYNNRGFRLVVGCIPYRYRESEDAKSIEEAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIECKLGKWCYKSKRQSIYHEGHMFGLLVKQELDGWPEKNIRKREWVTVSKAREECPHLWMIEALEELVWR 194

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008858 vs. ExPASy TrEMBL
Match: A0A0D2REC4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G133500 PE=3 SV=1)

HSP 1 Score: 397.512 bits (1020), Expect = 1.495e-135
Identity = 193/194 (99.48%), Postives = 193/194 (99.48%), Query Frame = -2

Query:  445 MGGISGFLMKFPSLIHFLLSLLEKIPARLPMPIEKLVSRVSYPRTGRHLQRYNNRGFRLVVGCIPYRYRESEDAKSIEEAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIECKLGKWCYKSKRQSIYHEGHMFGLLVKQELDGWPEKNIRKREWVTVSKAREECPHLWMIEALEELVWR 1026
            MGGISGFLMKFPSLIHFLLSLLEKIPARLPMPIEKLVSRVSYPRTGRHLQRYNNRGFRLVVGCIPYRYRESED KSIEEAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIECKLGKWCYKSKRQSIYHEGHMFGLLVKQELDGWPEKNIRKREWVTVSKAREECPHLWMIEALEELVWR
Sbjct:    1 MGGISGFLMKFPSLIHFLLSLLEKIPARLPMPIEKLVSRVSYPRTGRHLQRYNNRGFRLVVGCIPYRYRESEDGKSIEEAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIECKLGKWCYKSKRQSIYHEGHMFGLLVKQELDGWPEKNIRKREWVTVSKAREECPHLWMIEALEELVWR 194

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008858 vs. ExPASy TrEMBL
Match: A0A0D2RKS9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G133500 PE=3 SV=1)

HSP 1 Score: 392.889 bits (1008), Expect = 1.173e-133
Identity = 193/195 (98.97%), Postives = 193/195 (98.97%), Query Frame = -2

Query:  445 MGGISGFLMKFPSLIHFLLSLLEKIPARLPMPIEKLVSRVSYPRTGRHLQRYNNRGFRLVVG-CIPYRYRESEDAKSIEEAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIECKLGKWCYKSKRQSIYHEGHMFGLLVKQELDGWPEKNIRKREWVTVSKAREECPHLWMIEALEELVWR 1026
            MGGISGFLMKFPSLIHFLLSLLEKIPARLPMPIEKLVSRVSYPRTGRHLQRYNNRGFRLVVG CIPYRYRESED KSIEEAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIECKLGKWCYKSKRQSIYHEGHMFGLLVKQELDGWPEKNIRKREWVTVSKAREECPHLWMIEALEELVWR
Sbjct:    1 MGGISGFLMKFPSLIHFLLSLLEKIPARLPMPIEKLVSRVSYPRTGRHLQRYNNRGFRLVVGRCIPYRYRESEDGKSIEEAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIECKLGKWCYKSKRQSIYHEGHMFGLLVKQELDGWPEKNIRKREWVTVSKAREECPHLWMIEALEELVWR 195

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008858 vs. ExPASy TrEMBL
Match: A0A0D2NC46_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G133500 PE=3 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 1.371e-116
Identity = 170/173 (98.27%), Postives = 170/173 (98.27%), Query Frame = -2

Query:  508 MGGISGFLMKFPSLIHFLLSLLEKIPARLPMPIEKLVSRVSYPRTGRHLQRYNNRGFRLVVGCIPYRYRESEDAKSIEEAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIECKLGKWCYKSKRQSIYHEGHMFGLLVKQELDGWPEKNIRKREWVTVS 1026
            MGGISGFLMKFPSLIHFLLSLLEKIPARLPMPIEKLVSRVSYPRTGRHLQRYNNRGFRLVVGCIPYRYRESED KSIEEAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIECKLGKWCYKSKRQSIYHEGHMFGLLVKQELDGWPEKNIRKREWV  S
Sbjct:    1 MGGISGFLMKFPSLIHFLLSLLEKIPARLPMPIEKLVSRVSYPRTGRHLQRYNNRGFRLVVGCIPYRYRESEDGKSIEEAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIECKLGKWCYKSKRQSIYHEGHMFGLLVKQELDGWPEKNIRKREWVCDS 173

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008858 vs. ExPASy TrEMBL
Match: A0A0D2PSF8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G133500 PE=3 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 5.991e-116
Identity = 169/172 (98.26%), Postives = 170/172 (98.84%), Query Frame = -2

Query:  511 MGGISGFLMKFPSLIHFLLSLLEKIPARLPMPIEKLVSRVSYPRTGRHLQRYNNRGFRLVVGCIPYRYRESEDAKSIEEAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIECKLGKWCYKSKRQSIYHEGHMFGLLVKQELDGWPEKNIRKREWVTV 1026
            MGGISGFLMKFPSLIHFLLSLLEKIPARLPMPIEKLVSRVSYPRTGRHLQRYNNRGFRLVVGCIPYRYRESED KSIEEAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIECKLGKWCYKSKRQSIYHEGHMFGLLVKQELDGWPEKNIRKREWV +
Sbjct:    1 MGGISGFLMKFPSLIHFLLSLLEKIPARLPMPIEKLVSRVSYPRTGRHLQRYNNRGFRLVVGCIPYRYRESEDGKSIEEAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIECKLGKWCYKSKRQSIYHEGHMFGLLVKQELDGWPEKNIRKREWVCI 172

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008858 vs. ExPASy TrEMBL
Match: A0A061FWH2_THECC (Nudix hydrolase, putative OS=Theobroma cacao GN=TCM_012943 PE=3 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 3.086e-105
Identity = 150/192 (78.12%), Postives = 172/192 (89.58%), Query Frame = -2

Query:  451 MGGISGFLMKFPSLIHFLLSLLEKIPARLPMPIEKLVSRVSYPRTGRHLQRYNNRGFRLVVGCIPYRYRESEDAKSIEEAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIECKLGKWCYKSKRQSIYHEGHMFGLLVKQELDGWPEKNIRKREWVTVSKAREECPHLWMIEALEELV 1026
            MGGISGFL  FP  I+F  SLLE++P +LP+PI+KL+SRVSYPRTGR LQRY+ RGFRLVVGCIPYRYR++E+A SI+E IEVLVINAQNG+G+LFPKGGWEKDE+ME AAIRET EEAGV+G IECKLGKW YKSKRQS +HEGHMF LLV+QELD WPE+NIR R+WVTVS+ARE+CPHLWM EALEELV
Sbjct:    1 MGGISGFLTTFPPFIYFFWSLLERLPVKLPLPIDKLISRVSYPRTGRQLQRYDKRGFRLVVGCIPYRYRKTEEATSIDEVIEVLVINAQNGQGMLFPKGGWEKDETMEAAAIRETREEAGVIGNIECKLGKWLYKSKRQSKFHEGHMFPLLVEQELDRWPEENIRNRKWVTVSEAREQCPHLWMREALEELV 192

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008858 vs. ExPASy TrEMBL
Match: A0A0D2T920_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G291200 PE=3 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.517e-103
Identity = 151/194 (77.84%), Postives = 172/194 (88.66%), Query Frame = -2

Query:  445 MGGISGFLMKFPSLIHFLLSLLEKIPARLPMPIEKLVSRVSYPRTGRHLQRYNNRGFRLVVGCIPYRYRESEDAKSIEEAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIECKLGKWCYKSKRQSIYHEGHMFGLLVKQELDGWPEKNIRKREWVTVSKAREECPHLWMIEALEELVWR 1026
            MGGIS FL  F    +   S+LEKIP +LP+P+EK+VS VSYPRTGRHLQRY+NRGFRLVVGCIPYRY++ E+A S EE IEVLVI+AQNGKG+LFPKGGWE DESME+AAIRET+EEAGV+G+IECKLGKW YKSKRQSI+HEGHMF LLVK+ELD WPEKNIR+R+WVT+SKAREECPHLWM EALEELV R
Sbjct:    1 MGGISEFLTIFSPFTNLFESILEKIPIKLPIPLEKMVSYVSYPRTGRHLQRYDNRGFRLVVGCIPYRYKKLEEASSNEEEIEVLVISAQNGKGMLFPKGGWENDESMEDAAIRETLEEAGVLGIIECKLGKWSYKSKRQSIFHEGHMFPLLVKKELDLWPEKNIRERKWVTISKAREECPHLWMKEALEELVRR 194

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008858 vs. ExPASy TrEMBL
Match: A0A0D2SG77_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G133500 PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 1.678e-80
Identity = 125/127 (98.43%), Postives = 125/127 (98.43%), Query Frame = -2

Query:  646 MGGISGFLMKFPSLIHFLLSLLEKIPARLPMPIEKLVSRVSYPRTGRHLQRYNNRGFRLVVGCIPYRYRESEDAKSIEEAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIEC 1026
            MGGISGFLMKFPSLIHFLLSLLEKIPARLPMPIEKLVSRVSYPRTGRHLQRYNNRGFRLVVGCIPYRYRESED KSIEEAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIE 
Sbjct:    1 MGGISGFLMKFPSLIHFLLSLLEKIPARLPMPIEKLVSRVSYPRTGRHLQRYNNRGFRLVVGCIPYRYRESEDGKSIEEAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIEV 127

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008858 vs. ExPASy TrEMBL
Match: A0A067KF78_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11901 PE=3 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 6.179e-78
Identity = 132/200 (66.00%), Postives = 161/200 (80.50%), Query Frame = -2

Query:  445 MGGISGFLMKFPSLIHFLLSLLEKIPARLPMP---IEKLVSRVSYPRTGRHLQRYNNRGFRLVVGCIPYRYRESEDAKSIE---EAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIECKLGKWCYKSKRQSIYHEGHMFGLLVKQELDGWPEKNIRKREWVTVSKAREECPHLWMIEALEELVWR 1026
            M G+S FL  F +LI FLL LL+K+PA+L +P    EK+VS VS  RTGRHLQRY+ RG R VVGCIPYRY++S+D  S++   E IEVLVI+AQ GKG+LFPKGGWE+DESMEEAA+RET+EEAGV+G +EC+LGKW YKSKR  I HEG+MF +LV+++LD WPEK+IRKR WVTV++ARE C   WM EALEELV R
Sbjct:    1 MRGLSFFLRNFANLISFLLPLLDKLPAKL-LPAKQFEKMVSLVS--RTGRHLQRYD-RGCRQVVGCIPYRYKKSDDPSSMDKTAENIEVLVISAQRGKGMLFPKGGWEQDESMEEAAVRETLEEAGVIGNVECELGKWQYKSKRGGILHEGYMFPMLVQKQLDLWPEKDIRKRRWVTVTEAREVCQTWWMREALEELVRR 196

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008858 vs. ExPASy TrEMBL
Match: B9IEF7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s04970g PE=3 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 1.222e-70
Identity = 120/195 (61.54%), Postives = 152/195 (77.95%), Query Frame = -2

Query:  445 MGGISGFLMKFPSLIHFLLSLLEKIPAR-LPMPIEKLVSRVSYPRTGRHLQRYNNRGFRLVVGCIPYRYRESEDAKSIEEAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIECKLGKWCYKSKRQSIYHEGHMFGLLVKQELDGWPEKNIRKREWVTVSKAREECPHLWMIEALEELVWR 1026
            M  +S +L    + ++FL   L KIP++ LP+ IE +VS VS  RTGR+LQRY  +G RLVVGCIPYRY++S++  S+EE +EVLVI+AQNG+G+LFPKGGWE DESMEEAA+RET EEAGV+GV+  KLG W YKSKR SI HE +MF LLV++ELD WPE  IRKR WV++++ARE C + WM +ALEELV R
Sbjct:   67 MRNLSFYLTNLTNFLNFLFPFLIKIPSKSLPVQIETMVSLVS--RTGRNLQRYE-KGCRLVVGCIPYRYKKSQEPTSVEE-LEVLVISAQNGQGMLFPKGGWENDESMEEAAMRETEEEAGVIGVVGGKLGPWQYKSKRSSIMHESYMFPLLVQEELDSWPESKIRKRRWVSINEAREVCHNWWMRDALEELVRR 257

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BLAST of g.arboreum_cottongen_reftransV1_0008858 vs. ExPASy Swiss-Prot
Match: NUDT4_ARATH (Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4 PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.485e-66
Identity = 105/192 (54.69%), Postives = 139/192 (72.40%), Query Frame = -2

Query:  451 GISGFLMKFPSLIHFLLSLLEKIPAR--LPMPIEKLVSRVSYPRTGRHLQRYNNRGFRLVVGCIPYRYRESEDAKSIEEAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIECKLGKWCYKSKRQSIYHEGHMFGLLVKQELDGWPEKNIRKREWVTVSKAREECPHLWMIEALEELV 1020
             +S F+    ++  +L  + E IP+   +P  IEK+VS VS  RTGR LQRY++ G+R VVGC+PYRY++ E      + I+VL+++AQ GKG+LFPKGGWE DESMEEAA+RET+EEAGV G +E KLGKW YKSKR SI H+G+MF LLV QE + WPE  +R+R WV++ +ARE C + WM EALE  +
Sbjct:    5 SVSLFVSNLSNVASYLSPIFENIPSTKVVPAQIEKVVSLVS--RTGRDLQRYDHAGYRQVVGCVPYRYKKQEVNGVETQVIQVLLVSAQKGKGMLFPKGGWETDESMEEAALRETIEEAGVTGELEEKLGKWQYKSKRHSIIHDGYMFALLVSQEFERWPEAEMRQRRWVSLDEAREVCQNWWMREALEAFI 194

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008858 vs. ExPASy Swiss-Prot
Match: NUD21_ARATH (Nudix hydrolase 21, chloroplastic OS=Arabidopsis thaliana GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.134e-57
Identity = 103/199 (51.76%), Postives = 135/199 (67.84%), Query Frame = -2

Query:  445 ISGFLMKF-------PSLIHFLLSLLEKIPARLPMPIEKLVSRVSYPRTGRHLQRYNNRGFRLVVGCIPYRYRESEDAKSIEEAIEVLVINAQN-GKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIECKLGKWCYKSKRQSIYHEGHMFGLLVKQELDGWPEKNIRKREWVTVSKAREECPHLWMIEALEELVWR 1017
            IS F+  F       P+  +  +++  K    +P P EK+VS VS  RTGR LQRYN  G+R VVGC+PYRY++    +     IEVL+I+AQ  GKG+L PKGGWE DES+EEAA+RET+EEAGV G +E  LGKW YKSKR ++ H+GHMF LLV Q+ + WPE   R+R+WV++S+A E C + WM EALE  + R
Sbjct:    2 ISLFISNFSNLSNLSPTFDNMNMNIPSKKIVPVPTPSEKVVSLVS--RTGRDLQRYNTAGYRQVVGCVPYRYKKHGGGE-----IEVLLISAQKKGKGMLLPKGGWEIDESIEEAALRETIEEAGVTGQLEESLGKWQYKSKRHTMIHDGHMFPLLVSQQFEIWPESEFRQRKWVSLSEAIELCQNSWMREALEAFINR 193

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008858 vs. ExPASy Swiss-Prot
Match: NUD17_ARATH (Nudix hydrolase 17, mitochondrial OS=Arabidopsis thaliana GN=NUDT17 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.194e-50
Identity = 89/164 (54.27%), Postives = 121/164 (73.78%), Query Frame = -2

Query:  445 MPIEKLVSRVSYPRTGRHLQRYNNRGFRLVVGCIPYRYRESEDAKSIEEAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIECKLGKWCYKSKRQSIYHEGHMFGLLVKQELDGWPEKNIRKREWVTVSKAREECPHLWMIEALEELVWR 936
            M +EK+V   S  RTGR  QRYN +G R VVGC+PYR++ S D K I + +EVLVI++Q G  ++FPKGGWE DES+EEAA RE +EEAGV+G +E +LGKW + SK +  Y+EG MF +LV ++L+ WPE+++R+R W+ V++ARE C   WM EAL+ LV R
Sbjct:    1 MGVEKMVCLAS--RTGRQFQRYN-KGRRQVVGCVPYRFKLSNDGK-ISDEVEVLVISSQKGHALMFPKGGWELDESVEEAASRECLEEAGVLGNVEHQLGKWDFLSKSRGTYYEGLMFPMLVTEQLELWPEQHVRQRIWMNVTEAREACRDWWMKEALDVLVER 160

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008858 vs. ExPASy Swiss-Prot
Match: NUD18_ARATH (Nudix hydrolase 18, mitochondrial OS=Arabidopsis thaliana GN=NUDT18 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 7.811e-49
Identity = 85/151 (56.29%), Postives = 113/151 (74.83%), Query Frame = -2

Query:  445 RTGRHLQRYNNRGFRLVVGCIPYRYRESEDAKSIEEAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIECKLGKWCYKSKRQSIYHEGHMFGLLVKQELDGWPEKNIRKREWVTVSKAREECPHLWMIEALEELVWR 897
            RTGR  QRYN +G R VVGCIPYR + S D  +I +  EVLVI++Q G  ++FPKGGWE DES+EEAA RE++EEAGVVG +E +LGKW + SK +  ++EG MF +LVK+EL+ WPE+++R+R W+ V +AR+ C   WM EAL+ LV R
Sbjct:    7 RTGRQSQRYN-KGRRQVVGCIPYRLKISSDG-TISDEFEVLVISSQKGHALMFPKGGWELDESVEEAASRESLEEAGVVGNVERQLGKWDFLSKSKGTFYEGFMFPMLVKEELELWPEQHLRQRIWMKVDEARDACRDWWMKEALDVLVQR 155

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008858 vs. ExPASy Swiss-Prot
Match: NUD13_ARATH (Nudix hydrolase 13, mitochondrial OS=Arabidopsis thaliana GN=NUDT13 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.621e-36
Identity = 78/162 (48.15%), Postives = 106/162 (65.43%), Query Frame = -2

Query:  451 RTGRHLQRYNNRGFRLVVGCIPYRY--RESEDAKSI--EEAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVI-ECKLGKWCYKSKRQSIYHE--------GHMFGLLVKQELDGWPEKNIRKREWVTVSKAREECPHLWMIEALEELV 897
            RTGR  QRY+N  FRLV GCIPYR    E ED+ S+  E  ++VL+I++ N   ++FPKGGWE DE++ EAA RE +EEAGV G++ E  LG W ++SK  S+  +        G+MF L VK+EL  WPE++ R+R W+ V +A E C + WM  ALEE +
Sbjct:    7 RTGRDHQRYDN-NFRLVSGCIPYRLVKDEEEDSTSVDFENKLQVLMISSPNRHDLVFPKGGWEDDETVLEAASREAMEEAGVKGILREDPLGVWEFRSKSSSVEADCCLGGGCKGYMFALEVKEELAIWPEQDDRERRWLNVKEALELCRYEWMQSALEEFL 167

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008858 vs. ExPASy Swiss-Prot
Match: NUD12_ARATH (Nudix hydrolase 12, mitochondrial OS=Arabidopsis thaliana GN=NUDT12 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 2.383e-36
Identity = 75/161 (46.58%), Postives = 105/161 (65.22%), Query Frame = -2

Query:  451 RTGRHLQRYNNRGFRLVVGCIPYRY---RESEDAKSIE--EAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVI-ECKLGKWCYKSKRQSIYHE------GHMFGLLVKQELDGWPEKNIRKREWVTVSKAREECPHLWMIEALEELV 897
            RTGR  QRY+N  FRLV GCIPYR     E+E+   ++    +EVL++++ N   ++FPKGGWE DE++ EAA RE +EEAGV G++ E  LG W ++SK  ++  E      G+MF L V +EL+ WPE+  R+R W+TV +A E C + WM  ALEE +
Sbjct:    7 RTGRDRQRYDN-NFRLVSGCIPYRLMKADETEEDSGVDFVNKLEVLMVSSPNRHDLVFPKGGWEDDETVLEAASREAIEEAGVKGILRELPLGVWEFRSKSSTVEDECLGGCKGYMFALKVTEELEDWPERKNRERRWLTVKEALELCRYEWMQRALEEFL 166

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008858 vs. ExPASy Swiss-Prot
Match: NUD16_ARATH (Nudix hydrolase 16, mitochondrial OS=Arabidopsis thaliana GN=NUDT16 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 6.597e-29
Identity = 76/155 (49.03%), Postives = 100/155 (64.52%), Query Frame = -2

Query:  457 RTGRHLQRYNNRGFRLVVGCIPYRYRESEDAKSIEEA--IEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIECKLGKWCYKSK--RQSIYHEG----HMFGLLVKQELDGWPEKNIRKREWVTVSKAREECPHLWMIEALEE 897
            RTGR  QRY + G RLV GCIP+RY  S+   + E    I+VL+I++ +G G+LFPKGGWE DE++ EAA RE VEEAGV G++   LG + +KSK  +     EG     M+ L VK+EL  WPE   R R+W+T+ +A E C H WM +AL E
Sbjct:    7 RTGRLQQRYED-GSRLVAGCIPFRYVNSDKDGNSESGKVIQVLMISSSSGPGLLFPKGGWENDETVREAAAREAVEEAGVRGILMDFLGNYEFKSKSHQDEFSPEGLCKAAMYALYVKEELATWPEHETRTRKWLTIEEAVESCRHPWMKDALVE 160

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008858 vs. ExPASy Swiss-Prot
Match: APS1_SCHPO (Diphosphoinositol polyphosphate phosphohydrolase aps1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=aps1 PE=1 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.178e-9
Identity = 51/185 (27.57%), Postives = 79/185 (42.70%), Query Frame = -2

Query:  496 PMPIEKLVSRVSYPRTGRHLQRYNN-RGFRLVVGCIPYRYRESEDAKSIEEAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIECKLGKWCYKSKRQSIYH------------------------------------EGHMFGLLVKQELDGWPEKNIRKREWVTVSKARE 939
            P  +   V+R    R GR   R+N   G RL  G +      S D + +     +LV +A+     + PKGGWE DES+++AA+RE  EE G+VG I   LG +  K    +I                                      E   F ++V++  D +PE   R+R+W++  +A+E
Sbjct:   13 PDHLRTAVNRSMTSREGRTKNRFNPITGARLAAGVVAL----SADKRKV-----LLVSSAKKHPSWVVPKGGWEADESVQQAALREGWEEGGLVGHITRSLGSFKDKRPTDTIDRRKKYLKQLMSKSSGNDVSTNTELGAEAEKLLLPPRAECEFFEVIVERLEDNYPEMRKRRRKWMSYQEAKE 188

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008858 vs. ExPASy Swiss-Prot
Match: NUDT4_PONAB (Diphosphoinositol polyphosphate phosphohydrolase 2 OS=Pongo abelii GN=NUDT4 PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 8.965e-7
Identity = 40/126 (31.75%), Postives = 62/126 (49.21%), Query Frame = -2

Query:  502 YNNRGFRLVVGCIPYRYRESEDAKSIEEAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIECKLGKWCYKSKRQSIYHEGHMFGLLVKQELDGWPEK-NI-RKREWVTVSKA 873
            Y+  GF+    C+ +R  + ++         +LV +++     + P GG E +E    AA+RE  EEAGV G    KLG+     + Q   H  +++ L V + L+ W +  NI RKREW  V  A
Sbjct:   12 YDREGFKKRAACLCFRSEQEDEV--------LLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEEAGVKG----KLGRLLGIFENQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREWFKVEDA 125

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008858 vs. ExPASy Swiss-Prot
Match: NUDT4_HUMAN (Diphosphoinositol polyphosphate phosphohydrolase 2 OS=Homo sapiens GN=NUDT4 PE=1 SV=2)

HSP 1 Score: 52.373 bits (124), Expect = 8.965e-7
Identity = 40/126 (31.75%), Postives = 62/126 (49.21%), Query Frame = -2

Query:  502 YNNRGFRLVVGCIPYRYRESEDAKSIEEAIEVLVINAQNGKGILFPKGGWEKDESMEEAAIRETVEEAGVVGVIECKLGKWCYKSKRQSIYHEGHMFGLLVKQELDGWPEK-NI-RKREWVTVSKA 873
            Y+  GF+    C+ +R  + ++         +LV +++     + P GG E +E    AA+RE  EEAGV G    KLG+     + Q   H  +++ L V + L+ W +  NI RKREW  V  A
Sbjct:   12 YDREGFKKRAACLCFRSEQEDEV--------LLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEEAGVKG----KLGRLLGIFENQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREWFKVEDA 125

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0008858 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0008858 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0008858 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0NIY1_GOSAR	3.180e-136	100.00	Nudix hydrolase 4-like protein OS=Gossypium arbore...	[more]
A0A0D2REC4_GOSRA	1.495e-135	99.48	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2RKS9_GOSRA	1.173e-133	98.97	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2NC46_GOSRA	1.371e-116	98.27	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2PSF8_GOSRA	5.991e-116	98.26	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061FWH2_THECC	3.086e-105	78.13	Nudix hydrolase, putative OS=Theobroma cacao GN=TC...	[more]
A0A0D2T920_GOSRA	1.517e-103	77.84	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2SG77_GOSRA	1.678e-80	98.43	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A067KF78_JATCU	6.179e-78	66.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
B9IEF7_POPTR	1.222e-70	61.54	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0008858 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 11


Match Name	E-value	Identity	Description
NUDT4_ARATH	4.485e-66	54.69	Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4...	[more]
NUD21_ARATH	2.134e-57	51.76	Nudix hydrolase 21, chloroplastic OS=Arabidopsis t...	[more]
NUD17_ARATH	1.194e-50	54.27	Nudix hydrolase 17, mitochondrial OS=Arabidopsis t...	[more]
NUD18_ARATH	7.811e-49	56.29	Nudix hydrolase 18, mitochondrial OS=Arabidopsis t...	[more]
NUD13_ARATH	1.621e-36	48.15	Nudix hydrolase 13, mitochondrial OS=Arabidopsis t...	[more]
NUD12_ARATH	2.383e-36	46.58	Nudix hydrolase 12, mitochondrial OS=Arabidopsis t...	[more]
NUD16_ARATH	6.597e-29	49.03	Nudix hydrolase 16, mitochondrial OS=Arabidopsis t...	[more]
APS1_SCHPO	1.178e-9	27.57	Diphosphoinositol polyphosphate phosphohydrolase a...	[more]
NUDT4_PONAB	8.965e-7	31.75	Diphosphoinositol polyphosphate phosphohydrolase 2...	[more]
NUDT4_HUMAN	8.965e-7	31.75	Diphosphoinositol polyphosphate phosphohydrolase 2...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000086	NUDIX hydrolase domain	PFAM	PF00293	NUDIX	coord: 97..191 e-value: 1.4E-10 score: 41.2
IPR000086	NUDIX hydrolase domain	PROSITE	PS51462	NUDIX	coord: 70..206 score: 13.029
IPR015797	NUDIX hydrolase domain-like	GENE3D	3.90.79.10		coord: 71..206 e-value: 1.2E-21 score: 76.7
IPR015797	NUDIX hydrolase domain-like	SUPERFAMILY	55811	Nudix	coord: 62..207
None	No IPR available	PANTHER	PTHR12629:SF15	NUDIX HYDROLASE 21, CHLOROPLASTIC-RELATED	coord: 11..211
None	No IPR available	PANTHER	PTHR12629	DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE	coord: 11..211
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 15..220
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 10..14
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..14
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..9
IPR020084	NUDIX hydrolase, conserved site	PROSITE	PS00893	NUDIX_BOX	coord: 113..134

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0008858 ID=g.arboreum_cottongen_reftransV1_0008858; Name=g.arboreum_cottongen_reftransV1_0008858; organism=Gossypium arboreum; type=contig; length=1111bp
ATTGGGAGAAATTACAAAGGATAGACTTTCCGTCATTCGGTGAAGAAATG
AAAAATGAAATGTAGTGTAGACAATGGAATAAGCCTACGTGTCTGAATCC
TGAACCGAGGACTTGTGAAACCAGTTGCTTAATCTATGTCCTTATCAATA
ACACGTGGCCTAACCAAACTCCAACCAGAGTTAAATGATCAGAGGTTAAA
TTCTGATGTGAATCATACTTTTTGTATGGATTCAAACCCCAAATCAAATG
AATGAATCAATGAAAAAATTTTCTACCTACTGAAATGAATACCAGAACAA
AACCAACAAATGTTCGGAAATCCAACGTTTTGATGTCTTCTTATTTACAA
TGATCTCTTTTCCTAACCCTACAAATTCAAACAACAAAACTCCATAGTTG
CTACTTCATTTACTTCCTCCTTGGGCCGCACCTGCCTGCGTTTGTCGCCA
AACCAACTCTTCTAAGGCTTCTATCATCCACAAATGCGGGCATTCTTCTC
TAGCTTTCGACACTGTCACCCATTCCCGTTTTCGGATGTTTTTCTCAGGC
CATCCATCTAACTCTTGCTTCACAAGCAGACCAAACATGTGGCCTTCATG
GTATATACTTTGCCTTTTGCTCTTATAACACCATTTACCTAATTTACATT
CGATGACGCCAACTACACCGGCTTCCTCAACCGTCTCTCTAATGGCAGCT
TCTTCCATGGATTCATCTTTCTCCCAACCCCCTTTGGGGAATAATATCCC
TTTCCCATTTTGTGCATTTATTACAAGAACTTCAATCGCTTCCTCAATTG
ACTTGGCATCTTCGCTTTCCCTGTATCTGTAGGGAATGCACCCAACAACT
AAGCGGAAGCCTCTGTTATTATAGCGCTGCAAGTGCCTGCCGGTGCGAGG
ATATGAAACACGAGAAACCAATTTCTCAATTGGCATAGGCAATCTCGCAG
GGATTTTCTCCAGGAGAGACAACAAAAAGTGGATCAATGAGGGAAATTTC
ATAAGAAACCCCGATATCCCTCCCATGGCTTCAGTTTCAGACAAAACAAA
AAGCAGAAAATTTTGCAATAGAAAAAAAAATTGAAAATGGGTTTCTTTCG
TTGTGTTTTTG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR000086	NUDIX_hydrolase_dom
IPR015797	NUDIX_hydrolase-like_dom_sf
IPR020084	NUDIX_hydrolase_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0016787	hydrolase activity

Search form

g.arboreum_cottongen_reftransV1_0008858, g.arboreum_cottongen_reftransV1_0008858 (contig) Gossypium arboreum

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