g.arboreum_cottongen_reftransV1_0006091, g.arboreum_cottongen_reftransV1_0006091 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0006091
Unique Nameg.arboreum_cottongen_reftransV1_0006091
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length332
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr3chromosomeg.arboreum_cottongen_reftransV1_0006091:1..332 .
Chr3:49544545..49544876 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: A0A0D2RYB1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G125300 PE=4 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 6.977e-60
Identity = 94/101 (93.07%), Postives = 97/101 (96.04%), Query Frame = 3
Query:    3 TTEEAVTRAVKEELGSSRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEEDFVTEEKEEYEDADGTRRLEKAVSVRKHYWKWVCSDSLCS 305
            TTEEAV RAVKEELGSSR+VRIVPGSYRKKLEERNS SYPGLPARYVLHSV+AWVEGLPEEDFVTEEKEEYED DGTR LEKAVSVRKHYW+WVCSDSLCS
Sbjct:  176 TTEEAVARAVKEELGSSRIVRIVPGSYRKKLEERNSASYPGLPARYVLHSVDAWVEGLPEEDFVTEEKEEYEDVDGTRGLEKAVSVRKHYWEWVCSDSLCS 276          
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: A0A061G9L7_THECC (RING-H2 zinc finger protein RHA2a, putative OS=Theobroma cacao GN=TCM_015516 PE=4 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.522e-49
Identity = 84/97 (86.60%), Postives = 89/97 (91.75%), Query Frame = 3
Query:    3 TTEEAVTRAVKEELGS---SRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEEDFVTEEKEEYEDADGTRRLEKAVSVRKHYWKWV 284
            T EEAVTRAV+EELGS   S VVRIVPGSY+KKLEERNSVSYPGLPARY+LHSV+AWVEGLPEEDF TEEKEEYED DGTR LEKAVSVRKHYWKW+
Sbjct:  176 TPEEAVTRAVREELGSVVDSGVVRIVPGSYQKKLEERNSVSYPGLPARYILHSVDAWVEGLPEEDFCTEEKEEYEDTDGTRGLEKAVSVRKHYWKWI 272          
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: A0A0D2T7E2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G017300 PE=4 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.548e-45
Identity = 80/104 (76.92%), Postives = 86/104 (82.69%), Query Frame = 3
Query:    3 TTEEAVTRAVKEELGS---SRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEEDFVTEEKEEYEDADGTRRLEKAVSVRKHYWKWVCSDSLCS 305
            T EEAV RAVKEELGS      VRIVPGSY +KLEERNS SYPGLP RYVLHSV+AWVEGLPEEDF T E+EEY+D +GT  LEKAVSVRKH+WKWV SDSL S
Sbjct:  177 TVEEAVARAVKEELGSVIDPGSVRIVPGSYIEKLEERNSASYPGLPVRYVLHSVDAWVEGLPEEDFCTNEQEEYQDLNGTMELEKAVSVRKHFWKWVSSDSLRS 280          
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: A0A067E627_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g048617mg PE=4 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.213e-33
Identity = 67/98 (68.37%), Postives = 78/98 (79.59%), Query Frame = 3
Query:    3 TTEEAVTRAVKEELGS----SRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEE-DFVTEEKEEYEDADGTRRLEKAVSVRKHYWKW 281
            T EEAV RAVKEELGS    S  VRIVPGSY KKL+ERNS+SYPGLPARYVLHSV+A+V+GLPEE +F TEE EEY D+      +KA+ V++HYWKW
Sbjct:  177 TPEEAVIRAVKEELGSILNDSITVRIVPGSYSKKLDERNSLSYPGLPARYVLHSVDAFVDGLPEEGEFCTEEAEEYADSSAA---DKALFVKRHYWKW 271          
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: V4T2R7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021557mg PE=4 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.213e-33
Identity = 67/98 (68.37%), Postives = 78/98 (79.59%), Query Frame = 3
Query:    3 TTEEAVTRAVKEELGS----SRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEE-DFVTEEKEEYEDADGTRRLEKAVSVRKHYWKW 281
            T EEAV RAVKEELGS    S  VRIVPGSY KKL+ERNS+SYPGLPARYVLHSV+A+V+GLPEE +F TEE EEY D+      +KA+ V++HYWKW
Sbjct:  177 TPEEAVIRAVKEELGSILNDSITVRIVPGSYSKKLDERNSLSYPGLPARYVLHSVDAFVDGLPEEGEFCTEEAEEYADSSAA---DKALFVKRHYWKW 271          
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: B9SEL2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0970050 PE=4 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.214e-33
Identity = 64/101 (63.37%), Postives = 79/101 (78.22%), Query Frame = 3
Query:    3 TTEEAVTRAVKEELGS----SRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEEDFVTEEKEEYEDADGTRRLEKAVSVRKHYWKWVCSD 293
            T E AV RA+KEELGS       VRIV GSY++K+EERNS+SYPGLPARYVL+S++  V+GLP ++F TEE EEY D++  R  +KAVSVRKH+WKWV SD
Sbjct:  176 TPEAAVFRAIKEELGSILNDDANVRIVDGSYKEKIEERNSLSYPGLPARYVLYSMDVIVDGLPNDEFSTEEVEEYSDSEDKRTADKAVSVRKHFWKWVSSD 276          
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: W9RKE8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003244 PE=4 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.223e-33
Identity = 64/101 (63.37%), Postives = 80/101 (79.21%), Query Frame = 3
Query:    9 EEAVTRAVKEELGS----SRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEEDFVTEEKEEYEDADGTRRLEKAVSVRKHYWKWVCSDSL 299
            + AV RAV+EELGS       V IVPGSYRK +EERNSVSYPGLPARY LHSVEA+VEGLP+ +F TEE +EY +++ +   EKAVSV+KH+W+WV +DS+
Sbjct:  181 DSAVARAVQEELGSIIGDGGKVMIVPGSYRKTVEERNSVSYPGLPARYELHSVEAFVEGLPDGEFCTEEDDEYGNSENSGVAEKAVSVKKHFWRWVSADSV 281          
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: R0HEB0_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002643mg PE=4 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.367e-32
Identity = 66/111 (59.46%), Postives = 80/111 (72.07%), Query Frame = 3
Query:    3 TTEEAVTRAVKEELGS-------SRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEEDFVTEEKE-----EYEDADGTRRLEKAVSVRKHYWKWVCSDSL 299
            + +EAV RAVKEELGS        +  RI+PGSY +++EERNS+SYPGLPA Y LHSV+A VEGLPEEDF TEEKE       ED+  TR   KAV+V++HYWKWV  DS+
Sbjct:  182 SPDEAVIRAVKEELGSFFNGNDVGQRTRILPGSYSRRVEERNSLSYPGLPAHYALHSVDATVEGLPEEDFTTEEKEYGGGDSTEDSVETRAAGKAVTVKRHYWKWVSPDSI 292          
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: A0A0A0KJQ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139030 PE=4 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.858e-32
Identity = 63/106 (59.43%), Postives = 80/106 (75.47%), Query Frame = 3
Query:    3 TTEEAVTRAVKEELGS-------SRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEEDFVTEEKEEYEDADGTRRLEKAVSVRKHYWKWVCSDSL 299
            T E AV RAV+EELGS       S++VRIVP SYR K+EER+SVSYPGL A YVLHS++ WVEGLP+ DF T E+EEY +++ T   + AVSV+KH+WKWV  +S+
Sbjct:  187 TPESAVYRAVQEELGSILGDSDYSQLVRIVPDSYRLKIEERDSVSYPGLSASYVLHSMDVWVEGLPDGDFCTVEEEEYVNSEDTNIADHAVSVKKHFWKWVSPESV 292          
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: D7M352_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_489310 PE=4 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.742e-32
Identity = 65/114 (57.02%), Postives = 83/114 (72.81%), Query Frame = 3
Query:    3 TTEEAVTRAVKEELGS-------SRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEEDFVTEEKE------EYEDADGTRRLEKAVSVRKHYWKWVCSDSLCS 305
            + +EAV RA+KEELGS        + +RI+PG+Y +++EERNS+SYPGLPARY LHSV+A VEGLPEEDF T+EKE        ED+  TR   KAV+V++HYWKWV  DS+ S
Sbjct:  182 SPDEAVFRAIKEELGSIFNGDDVGQRIRILPGTYSRRVEERNSLSYPGLPARYALHSVDATVEGLPEEDFCTDEKEYDGGDSTTEDSVETRAAGKAVTVKRHYWKWVSPDSIRS 295          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2RYB1_GOSRA6.977e-6093.07Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061G9L7_THECC1.522e-4986.60RING-H2 zinc finger protein RHA2a, putative OS=The... [more]
A0A0D2T7E2_GOSRA5.548e-4576.92Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A067E627_CITSI2.213e-3368.37Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
V4T2R7_9ROSI2.213e-3368.37Uncharacterized protein OS=Citrus clementina GN=CI... [more]
B9SEL2_RICCO3.214e-3363.37Putative uncharacterized protein OS=Ricinus commun... [more]
W9RKE8_9ROSA3.223e-3363.37Uncharacterized protein OS=Morus notabilis GN=L484... [more]
R0HEB0_9BRAS3.367e-3259.46Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
A0A0A0KJQ6_CUCSA3.858e-3259.43Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
D7M352_ARALL4.742e-3257.02Putative uncharacterized protein OS=Arabidopsis ly... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36395FAMILY NOT NAMEDcoord: 2..69

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0006091 ID=g.arboreum_cottongen_reftransV1_0006091; Name=g.arboreum_cottongen_reftransV1_0006091; organism=Gossypium arboreum; type=contig; length=332bp
AAACTACCGAAGAAGCAGTGACTCGAGCAGTAAAAGAGGAGCTTGGTTCT
TCCAGGGTCGTGAGGATTGTGCCAGGGTCTTATCGAAAGAAACTGGAGGA
GCGCAATTCGGTCTCGTATCCAGGGTTGCCGGCGCGTTATGTTTTACATT
CGGTAGAGGCGTGGGTAGAAGGTTTGCCTGAGGAAGATTTTGTTACTGAA
GAAAAGGAAGAGTACGAGGATGCTGATGGGACAAGGAGATTGGAGAAAGC
GGTGTCTGTAAGGAAGCATTATTGGAAATGGGTTTGTTCTGATTCTCTTT
GCTCCTGAATGGATGCGAAATTTTGGTTGAAT
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