g.arboreum_cottongen_reftransV1_0006091, g.arboreum_cottongen_reftransV1_0006091 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: A0A0D2RYB1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G125300 PE=4 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 6.977e-60 Identity = 94/101 (93.07%), Postives = 97/101 (96.04%), Query Frame = 3 Query: 3 TTEEAVTRAVKEELGSSRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEEDFVTEEKEEYEDADGTRRLEKAVSVRKHYWKWVCSDSLCS 305 TTEEAV RAVKEELGSSR+VRIVPGSYRKKLEERNS SYPGLPARYVLHSV+AWVEGLPEEDFVTEEKEEYED DGTR LEKAVSVRKHYW+WVCSDSLCS Sbjct: 176 TTEEAVARAVKEELGSSRIVRIVPGSYRKKLEERNSASYPGLPARYVLHSVDAWVEGLPEEDFVTEEKEEYEDVDGTRGLEKAVSVRKHYWEWVCSDSLCS 276
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: A0A061G9L7_THECC (RING-H2 zinc finger protein RHA2a, putative OS=Theobroma cacao GN=TCM_015516 PE=4 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.522e-49 Identity = 84/97 (86.60%), Postives = 89/97 (91.75%), Query Frame = 3 Query: 3 TTEEAVTRAVKEELGS---SRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEEDFVTEEKEEYEDADGTRRLEKAVSVRKHYWKWV 284 T EEAVTRAV+EELGS S VVRIVPGSY+KKLEERNSVSYPGLPARY+LHSV+AWVEGLPEEDF TEEKEEYED DGTR LEKAVSVRKHYWKW+ Sbjct: 176 TPEEAVTRAVREELGSVVDSGVVRIVPGSYQKKLEERNSVSYPGLPARYILHSVDAWVEGLPEEDFCTEEKEEYEDTDGTRGLEKAVSVRKHYWKWI 272
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: A0A0D2T7E2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G017300 PE=4 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 5.548e-45 Identity = 80/104 (76.92%), Postives = 86/104 (82.69%), Query Frame = 3 Query: 3 TTEEAVTRAVKEELGS---SRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEEDFVTEEKEEYEDADGTRRLEKAVSVRKHYWKWVCSDSLCS 305 T EEAV RAVKEELGS VRIVPGSY +KLEERNS SYPGLP RYVLHSV+AWVEGLPEEDF T E+EEY+D +GT LEKAVSVRKH+WKWV SDSL S Sbjct: 177 TVEEAVARAVKEELGSVIDPGSVRIVPGSYIEKLEERNSASYPGLPVRYVLHSVDAWVEGLPEEDFCTNEQEEYQDLNGTMELEKAVSVRKHFWKWVSSDSLRS 280
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: A0A067E627_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g048617mg PE=4 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 2.213e-33 Identity = 67/98 (68.37%), Postives = 78/98 (79.59%), Query Frame = 3 Query: 3 TTEEAVTRAVKEELGS----SRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEE-DFVTEEKEEYEDADGTRRLEKAVSVRKHYWKW 281 T EEAV RAVKEELGS S VRIVPGSY KKL+ERNS+SYPGLPARYVLHSV+A+V+GLPEE +F TEE EEY D+ +KA+ V++HYWKW Sbjct: 177 TPEEAVIRAVKEELGSILNDSITVRIVPGSYSKKLDERNSLSYPGLPARYVLHSVDAFVDGLPEEGEFCTEEAEEYADSSAA---DKALFVKRHYWKW 271
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: V4T2R7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021557mg PE=4 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 2.213e-33 Identity = 67/98 (68.37%), Postives = 78/98 (79.59%), Query Frame = 3 Query: 3 TTEEAVTRAVKEELGS----SRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEE-DFVTEEKEEYEDADGTRRLEKAVSVRKHYWKW 281 T EEAV RAVKEELGS S VRIVPGSY KKL+ERNS+SYPGLPARYVLHSV+A+V+GLPEE +F TEE EEY D+ +KA+ V++HYWKW Sbjct: 177 TPEEAVIRAVKEELGSILNDSITVRIVPGSYSKKLDERNSLSYPGLPARYVLHSVDAFVDGLPEEGEFCTEEAEEYADSSAA---DKALFVKRHYWKW 271
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: B9SEL2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0970050 PE=4 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 3.214e-33 Identity = 64/101 (63.37%), Postives = 79/101 (78.22%), Query Frame = 3 Query: 3 TTEEAVTRAVKEELGS----SRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEEDFVTEEKEEYEDADGTRRLEKAVSVRKHYWKWVCSD 293 T E AV RA+KEELGS VRIV GSY++K+EERNS+SYPGLPARYVL+S++ V+GLP ++F TEE EEY D++ R +KAVSVRKH+WKWV SD Sbjct: 176 TPEAAVFRAIKEELGSILNDDANVRIVDGSYKEKIEERNSLSYPGLPARYVLYSMDVIVDGLPNDEFSTEEVEEYSDSEDKRTADKAVSVRKHFWKWVSSD 276
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: W9RKE8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003244 PE=4 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 3.223e-33 Identity = 64/101 (63.37%), Postives = 80/101 (79.21%), Query Frame = 3 Query: 9 EEAVTRAVKEELGS----SRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEEDFVTEEKEEYEDADGTRRLEKAVSVRKHYWKWVCSDSL 299 + AV RAV+EELGS V IVPGSYRK +EERNSVSYPGLPARY LHSVEA+VEGLP+ +F TEE +EY +++ + EKAVSV+KH+W+WV +DS+ Sbjct: 181 DSAVARAVQEELGSIIGDGGKVMIVPGSYRKTVEERNSVSYPGLPARYELHSVEAFVEGLPDGEFCTEEDDEYGNSENSGVAEKAVSVKKHFWRWVSADSV 281
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: R0HEB0_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002643mg PE=4 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 3.367e-32 Identity = 66/111 (59.46%), Postives = 80/111 (72.07%), Query Frame = 3 Query: 3 TTEEAVTRAVKEELGS-------SRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEEDFVTEEKE-----EYEDADGTRRLEKAVSVRKHYWKWVCSDSL 299 + +EAV RAVKEELGS + RI+PGSY +++EERNS+SYPGLPA Y LHSV+A VEGLPEEDF TEEKE ED+ TR KAV+V++HYWKWV DS+ Sbjct: 182 SPDEAVIRAVKEELGSFFNGNDVGQRTRILPGSYSRRVEERNSLSYPGLPAHYALHSVDATVEGLPEEDFTTEEKEYGGGDSTEDSVETRAAGKAVTVKRHYWKWVSPDSI 292
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: A0A0A0KJQ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139030 PE=4 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 3.858e-32 Identity = 63/106 (59.43%), Postives = 80/106 (75.47%), Query Frame = 3 Query: 3 TTEEAVTRAVKEELGS-------SRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEEDFVTEEKEEYEDADGTRRLEKAVSVRKHYWKWVCSDSL 299 T E AV RAV+EELGS S++VRIVP SYR K+EER+SVSYPGL A YVLHS++ WVEGLP+ DF T E+EEY +++ T + AVSV+KH+WKWV +S+ Sbjct: 187 TPESAVYRAVQEELGSILGDSDYSQLVRIVPDSYRLKIEERDSVSYPGLSASYVLHSMDVWVEGLPDGDFCTVEEEEYVNSEDTNIADHAVSVKKHFWKWVSPESV 292
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: D7M352_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_489310 PE=4 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 4.742e-32 Identity = 65/114 (57.02%), Postives = 83/114 (72.81%), Query Frame = 3 Query: 3 TTEEAVTRAVKEELGS-------SRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEEDFVTEEKE------EYEDADGTRRLEKAVSVRKHYWKWVCSDSLCS 305 + +EAV RA+KEELGS + +RI+PG+Y +++EERNS+SYPGLPARY LHSV+A VEGLPEEDF T+EKE ED+ TR KAV+V++HYWKWV DS+ S Sbjct: 182 SPDEAVFRAIKEELGSIFNGDDVGQRIRILPGTYSRRVEERNSLSYPGLPARYALHSVDATVEGLPEEDFCTDEKEYDGGDSTTEDSVETRAAGKAVTVKRHYWKWVSPDSIRS 295 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0006091 ID=g.arboreum_cottongen_reftransV1_0006091; Name=g.arboreum_cottongen_reftransV1_0006091; organism=Gossypium arboreum; type=contig; length=332bpback to top |