g.arboreum_cottongen_reftransV1_0018937, g.arboreum_cottongen_reftransV1_0018937 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0018937
Unique Name	g.arboreum_cottongen_reftransV1_0018937
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	879

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr8	chromosome	g.arboreum_cottongen_reftransV1_0018937:1..879 . Chr8:59023235..59027262 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: A0A0D2RTG8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G035300 PE=4 SV=1)

HSP 1 Score: 415.231 bits (1066), Expect = 2.198e-137
Identity = 221/222 (99.55%), Postives = 221/222 (99.55%), Query Frame = -3

Query:  212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877
            CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFL VLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE
Sbjct:  433 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLAVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 654

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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: A0A0D2TIR1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G035300 PE=4 SV=1)

HSP 1 Score: 415.231 bits (1066), Expect = 4.287e-137
Identity = 221/222 (99.55%), Postives = 221/222 (99.55%), Query Frame = -3

Query:  212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877
            CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFL VLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE
Sbjct:  463 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLAVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 684

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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: A0A0B0P6U7_GOSAR (DENN domain-containing 4C OS=Gossypium arboreum GN=F383_07759 PE=4 SV=1)

HSP 1 Score: 415.616 bits (1067), Expect = 5.932e-136
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = -3

Query:  212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877
            CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE
Sbjct:  572 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 793

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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: A0A0D2Q8G7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G035300 PE=4 SV=1)

HSP 1 Score: 414.461 bits (1064), Expect = 8.153e-136
Identity = 221/222 (99.55%), Postives = 221/222 (99.55%), Query Frame = -3

Query:  212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877
            CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFL VLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE
Sbjct:  550 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLAVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 771

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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: A0A0D2TCW8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G035300 PE=4 SV=1)

HSP 1 Score: 414.461 bits (1064), Expect = 1.286e-135
Identity = 221/222 (99.55%), Postives = 221/222 (99.55%), Query Frame = -3

Query:  212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877
            CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFL VLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE
Sbjct:  565 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLAVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 786

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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: A0A0D2UFP1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G035300 PE=4 SV=1)

HSP 1 Score: 414.846 bits (1065), Expect = 1.561e-135
Identity = 221/222 (99.55%), Postives = 221/222 (99.55%), Query Frame = -3

Query:  212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877
            CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFL VLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE
Sbjct:  580 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLAVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 801

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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: A0A061GLL0_THECC (DENN domain-containing protein isoform 1 OS=Theobroma cacao GN=TCM_037549 PE=4 SV=1)

HSP 1 Score: 405.601 bits (1041), Expect = 8.930e-132
Identity = 216/222 (97.30%), Postives = 218/222 (98.20%), Query Frame = -3

Query:  212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877
            CGSLRLEHVLTIFA ALLEKQIVVVCSNLGILSA VLSIVPLIRPYQWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIK STIPQLPQHRELFACLSPYHAKLVGESYLGRKRPV+ECTDVQIEAAKGFL VLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLF+VHTDLVLSFIQKE
Sbjct:  601 CGSLRLEHVLTIFAGALLEKQIVVVCSNLGILSATVLSIVPLIRPYQWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKASTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVYECTDVQIEAAKGFLSVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFSVHTDLVLSFIQKE 822

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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: A0A059CLW7_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_C008221 PE=4 SV=1)

HSP 1 Score: 374.785 bits (961), Expect = 2.742e-122
Identity = 192/222 (86.49%), Postives = 215/222 (96.85%), Query Frame = -3

Query:  212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877
            CGSLRLE+VLT+FA ALLEKQI+VVCSNLGILSA+VLS++PLIRPYQWQSLLMPVLP+DML+FLDAPVPY+VG+KNKTSEVQSK+ANVILVDANKNQ+K+ +IPQLP+H+ELF+ LSPYHAKLVGES+LGRKRP++ECTDVQIEAAKGFL VLRSYLDSLCSN+RSHTITNVQSN+DKVSLLLKESFIDSF  RDRPFMKLFVDTQLF+VHTDLVLSF QKE
Sbjct:  390 CGSLRLENVLTLFAGALLEKQILVVCSNLGILSALVLSVIPLIRPYQWQSLLMPVLPNDMLEFLDAPVPYVVGIKNKTSEVQSKIANVILVDANKNQVKSPSIPQLPRHKELFSSLSPYHAKLVGESFLGRKRPMYECTDVQIEAAKGFLAVLRSYLDSLCSNLRSHTITNVQSNDDKVSLLLKESFIDSFNYRDRPFMKLFVDTQLFSVHTDLVLSFFQKE 611

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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: A0A022QF14_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a001758mg PE=4 SV=1)

HSP 1 Score: 375.17 bits (962), Expect = 1.281e-120
Identity = 192/222 (86.49%), Postives = 214/222 (96.40%), Query Frame = -3

Query:  212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877
            CGSLRLEHVLT+FA ALLEKQI+VVCSNLGILSA+VLSI+PLIRPYQWQSLLMPVLP+DMLDFLDAPVPYIVGV+NKT++VQ+KL N ILVDAN+NQ+KT TIPQLPQH+EL++ LSPYHAKLVGESYLG+KRPV+ECTDVQ+EAAKGFL VLRSYLD+LCSN+RSHTITNVQSN+DKVSLLLKESFI+SFPSRDRPFMKLFVDTQLF+VHTD VLSF QKE
Sbjct:  543 CGSLRLEHVLTLFAGALLEKQILVVCSNLGILSALVLSIIPLIRPYQWQSLLMPVLPNDMLDFLDAPVPYIVGVRNKTTDVQAKLTNAILVDANRNQVKTPTIPQLPQHKELYSSLSPYHAKLVGESYLGKKRPVYECTDVQVEAAKGFLGVLRSYLDNLCSNLRSHTITNVQSNDDKVSLLLKESFIESFPSRDRPFMKLFVDTQLFSVHTDFVLSFFQKE 764

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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: D7TCG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g01240 PE=4 SV=1)

HSP 1 Score: 374.785 bits (961), Expect = 2.722e-120
Identity = 198/222 (89.19%), Postives = 211/222 (95.05%), Query Frame = -3

Query:  212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877
            CGSLRLE+VLT+FA ALLEKQIV VCSNLGILSA VLSIVPLIRPYQWQS LMPVLP+DMLDFLDAPVPYIVGVKNKTSEVQSKL NVILVD  KNQ+K+STIPQLP+H+ELF+ LSPYHAKLVGESYLGRKRPV+ECTDVQIEAAKGFL VLRSYLD+LCSN+RSHTITNVQSN+DKVSLLLKESFIDSFPSRDRPFMK FVDTQLF+VHTDLVLSF QKE
Sbjct:  567 CGSLRLENVLTLFAGALLEKQIVFVCSNLGILSASVLSIVPLIRPYQWQSWLMPVLPNDMLDFLDAPVPYIVGVKNKTSEVQSKLTNVILVDVYKNQVKSSTIPQLPKHKELFSSLSPYHAKLVGESYLGRKRPVYECTDVQIEAAKGFLGVLRSYLDTLCSNLRSHTITNVQSNDDKVSLLLKESFIDSFPSRDRPFMKHFVDTQLFSVHTDLVLSFFQKE 788

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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Match: DEN4C_HUMAN (DENN domain-containing protein 4C OS=Homo sapiens GN=DENND4C PE=1 SV=2)

HSP 1 Score: 57.3806 bits (137), Expect = 7.605e-8
Identity = 59/229 (25.76%), Postives = 105/229 (45.85%), Query Frame = -3

Query:  254 EHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQI------KTSTIPQLPQH---------RELFACLSPYHAKLVGESYLGRKRPVH-------ECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKV--SLLLKESFIDSFPSRDRPFMKLFV---DTQLF 859
            E+  T+    LLE +I++      +L+ +  ++V +I P+QWQ   +P+ P  +   L AP+P+IVGV ++  ++     +V+ +D + N +      K     QLP+          ++L+  LS  H K    S +    P+        + T +++E  + FL  + S L    + +R   IT   SN      SL  ++ F+    SRDR + K +     TQ+F
Sbjct:  167 ENCATLLLFVLLESKILLHSLRPAVLTGVAEAVVAMIFPFQWQCPYIPLCPLSLAAVLSAPLPFIVGVDSRYFDLHDPPQDVVCIDLDTNMLYVSDEKKNMNWKQLPKKPCKNLLSTLKKLYPQLSSVHQKTQEGSAIDMT-PIEADFSWQKKMTQLEMEIQEAFLRFMASILKGYRTYLR--PITEAPSNKATAADSLFDRQGFLK---SRDRAYAKFYTLLSKTQIF 389

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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Match: DEN5B_DANRE (DENN domain-containing protein 5B OS=Danio rerio GN=dennd5b PE=2 SV=2)

HSP 1 Score: 56.225 bits (134), Expect = 1.972e-7
Identity = 43/120 (35.83%), Postives = 68/120 (56.67%), Query Frame = -3

Query:  527 LRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKL-----ANVILVDANKNQIK-TSTIPQLPQHRELFACLS 868
            L +E+++ +F   LLE QI++   +   L  +   I  L+ P+QWQ + +P+LP  +L FLDAPVPY++G+++K    +SKL     AN+  VD + + I+     PQ P   E    LS
Sbjct:  304 LGVENLVQLFTCVLLEMQILLYSQDYQRLMVVAEGITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSKEGTDRSKLELPQEANLCFVDIDNHCIELPEDFPQFPNRSEFIQELS 423

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Match: DEN5B_HUMAN (DENN domain-containing protein 5B OS=Homo sapiens GN=DENND5B PE=1 SV=2)

HSP 1 Score: 55.8398 bits (133), Expect = 2.394e-7
Identity = 43/120 (35.83%), Postives = 68/120 (56.67%), Query Frame = -3

Query:  527 LRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKL-----ANVILVDANKNQIK-TSTIPQLPQHRELFACLS 868
            L LE+++ +F   LLE QI++   +   L  +   I  L+ P+QWQ + +P+LP  +L FLDAPVPY++G+++K    +SKL     AN+  VD + + I+     PQ P   +    LS
Sbjct:  278 LGLENLVQVFTCVLLEMQILLYSQDYQRLMTVAEGITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSKEGTDRSKLELPQEANLCFVDIDNHFIELPEEFPQFPNKVDFIQELS 397

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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Match: DEN5B_MOUSE (DENN domain-containing protein 5B OS=Mus musculus GN=Dennd5b PE=1 SV=2)

HSP 1 Score: 55.4546 bits (132), Expect = 2.866e-7
Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = -3

Query:  527 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKL-----ANVILVDANKNQIK-TSTIPQLPQHRELFACLS 877
            C  L LE+++ +F   LLE Q ++   +   L  +   I  L+ P+QWQ + +P+LP  +L FLDAPVPY++G+++K    +SKL     AN+  VD + + I+     PQ P   +    LS
Sbjct:  275 CELLGLENLVQVFTCVLLEMQTLLYSQDYQRLMTVAEGITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSKEGTDRSKLELPQEANLCFVDIDNHFIELPEEFPQFPNKVDFIQELS 397

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Match: SCD1_ARATH (DENN domain and WD repeat-containing protein SCD1 OS=Arabidopsis thaliana GN=SCD1 PE=1 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 3.454e-7
Identity = 33/106 (31.13%), Postives = 67/106 (63.21%), Query Frame = -3

Query:  554 LRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTS-TIPQLPQ 868
            L +++++ +F + L+E++I++  +   +L+ +  SI  LI P++W  + +P+L    +D++DAP PY++G+ +        +  V++VD + NQI TS  IPQ+P+
Sbjct:  214 LDVDNLIKLFTSVLVERRILIRSNKYSLLTLVSESICHLIYPFRWLQVYIPLLFFSGVDYIDAPTPYMMGLHSDVDTSNLAMDGVVVVDLDINQITTSEEIPQIPE 319

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Match: DEN5A_MOUSE (DENN domain-containing protein 5A OS=Mus musculus GN=Dennd5a PE=1 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 4.075e-7
Identity = 42/115 (36.52%), Postives = 67/115 (58.26%), Query Frame = -3

Query:  542 LRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKL-----ANVILVDANKNQIK-TSTIPQLPQHREL 868
            L +E+V  +F  ALLE QI++   +   L  +  +I  L+ P+QWQ + +P+LP  +L FLDAPVPY++G+ +   + +SKL     AN+  VD + + I+    +PQ P   E 
Sbjct:  293 LGVENVFQLFTCALLEFQILLYSQHYQRLMTVAETITALMFPFQWQHVYVPILPASLLHFLDAPVPYLMGLHSNGLDDRSKLELPQEANLCFVDVDNHFIELPEDLPQFPNKLEF 407

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Match: DEN5A_HUMAN (DENN domain-containing protein 5A OS=Homo sapiens GN=DENND5A PE=1 SV=2)

HSP 1 Score: 54.6842 bits (130), Expect = 6.103e-7
Identity = 42/115 (36.52%), Postives = 67/115 (58.26%), Query Frame = -3

Query:  542 LRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKL-----ANVILVDANKNQIK-TSTIPQLPQHREL 868
            L +E+V  +F  ALLE QI++   +   L  +  +I  L+ P+QWQ + +P+LP  +L FLDAPVPY++G+ +   + +SKL     AN+  VD + + I+    +PQ P   E 
Sbjct:  293 LGVENVFQLFTCALLEFQILLYSQHYQRLMTVAETITALMFPFQWQHVYVPILPASLLHFLDAPVPYLMGLHSNGLDDRSKLELPQEANLCFVDIDNHFIELPEDLPQFPNKLEF 407

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2RTG8_GOSRA	2.198e-137	99.55	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2TIR1_GOSRA	4.287e-137	99.55	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0P6U7_GOSAR	5.932e-136	100.00	DENN domain-containing 4C OS=Gossypium arboreum GN...	[more]
A0A0D2Q8G7_GOSRA	8.153e-136	99.55	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2TCW8_GOSRA	1.286e-135	99.55	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2UFP1_GOSRA	1.561e-135	99.55	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061GLL0_THECC	8.930e-132	97.30	DENN domain-containing protein isoform 1 OS=Theobr...	[more]
A0A059CLW7_EUCGR	2.742e-122	86.49	Uncharacterized protein (Fragment) OS=Eucalyptus g...	[more]
A0A022QF14_ERYGU	1.281e-120	86.49	Uncharacterized protein OS=Erythranthe guttata GN=...	[more]
D7TCG1_VITVI	2.722e-120	89.19	Putative uncharacterized protein OS=Vitis vinifera...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 7


Match Name	E-value	Identity	Description
DEN4C_HUMAN	7.605e-8	25.76	DENN domain-containing protein 4C OS=Homo sapiens ...	[more]
DEN5B_DANRE	1.972e-7	35.83	DENN domain-containing protein 5B OS=Danio rerio G...	[more]
DEN5B_HUMAN	2.394e-7	35.83	DENN domain-containing protein 5B OS=Homo sapiens ...	[more]
DEN5B_MOUSE	2.866e-7	34.96	DENN domain-containing protein 5B OS=Mus musculus ...	[more]
SCD1_ARATH	3.454e-7	31.13	DENN domain and WD repeat-containing protein SCD1 ...	[more]
DEN5A_MOUSE	4.075e-7	36.52	DENN domain-containing protein 5A OS=Mus musculus ...	[more]
DEN5A_HUMAN	6.103e-7	36.52	DENN domain-containing protein 5A OS=Homo sapiens ...	[more]

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001194	DENN domain	SMART	SM00799	DENN_cls	coord: 1..93 e-value: 1.8E-4 score: 3.9
IPR001194	DENN domain	PFAM	PF02141	DENN	coord: 2..92 e-value: 1.4E-24 score: 86.9
IPR001194	DENN domain	PROSITE	PS50211	DENN	coord: 1..93 score: 23.283
None	No IPR available	PANTHER	PTHR15288	SUPPRESSION OF TUMORIGENICITY 5 ST5	coord: 1..219
None	No IPR available	PANTHER	PTHR15288:SF4	DENN (AEX-3) DOMAIN-CONTAINING PROTEIN	coord: 1..219
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 41..219
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 19..40
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..18
None	No IPR available	TMHMM	TMhelix		coord: 21..40
IPR005112	dDENN domain	PROSITE	PS50947	DDENN	coord: 138..219 score: 10.701

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0018937 ID=g.arboreum_cottongen_reftransV1_0018937; Name=g.arboreum_cottongen_reftransV1_0018937; organism=Gossypium arboreum; type=contig; length=879bp
GCAATTTTCAGGTTGCCAAATGGCACGGGGAGAATTGGGTTGAAGGAAAA
ATAAATATATAAATACACTTTTACAAACCCTATAAAATCCTTTTTCTTTT
TCCTTTTTTTCTGCTGATTTTGATAAAATAATTTGACATTATATATTGCT
TAACTTATGTTCAAGTTACAACACTACAATAGCACACCATCTTTGGATGA
TTGTTGTCCTATTCCTTCTGGATAAATGAGAGAACAAGATCTGTATGTAC
AGTAAAGAGTTGTGTGTCCACAAACAGCTTCATAAATGGTCGATCACGAC
TAGGGAATGAATCAATGAAACTCTCTTTTAAAAGCAACGATACCTTATCA
TTATTGGACTGTACATTTGTAATTGTGTGTGACCGCATGTTAGAGCAAAG
AGAATCCAAGTATGATCTTAACACCACTAAAAAACCTTTGGCAGCTTCAA
TCTGCACATCTGTGCACTCATGTACTGGTCTTTTCCTCCCCAAATAACTT
TCACCGACAAGCTTTGCATGATAAGGACTCAAGCATGCAAAGAGCTCCCT
ATGTTGTGGCAGCTGTGGTATTGTGGACGTCTTTATCTGGTTCTTATTAG
CATCGACCAGAATTACATTGGCTAACTTTGACTGCACTTCACTCGTTTTG
TTCTTTACACCAACTATGTAAGGAACAGGCGCATCTAAGAAGTCTAGCAT
ATCATCTGGCAAAACCGGCATCAAGAGGCTTTGCCATTGGTATGGCCGGA
TCAGAGGGACAATTGACAAAACTATAGCAGATAAAATTCCCAAATTTGAA
CAAACAACCACAATCTGTTTCTCCAGCAATGCTGCTGCAAAGATTGTTAG
AACATGTTCAAGCCGCAGAGATCCACACA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR001194	cDENN_dom
IPR005112	dDENN_dom

Search form

g.arboreum_cottongen_reftransV1_0018937, g.arboreum_cottongen_reftransV1_0018937 (contig) Gossypium arboreum

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