g.arboreum_cottongen_reftransV1_0008835, g.arboreum_cottongen_reftransV1_0008835 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0008835
Unique Name	g.arboreum_cottongen_reftransV1_0008835
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	1672

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr10	chromosome	g.arboreum_cottongen_reftransV1_0008835:1..1672 . Chr10:55188767..55193317 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: A0A0B0P4H5_GOSAR (Ribosomal RNA large subunit methyltransferase N OS=Gossypium arboreum GN=F383_01665 PE=3 SV=1)

HSP 1 Score: 861.677 bits (2225), Expect = 0.000e+0
Identity = 426/426 (100.00%), Postives = 426/426 (100.00%), Query Frame = -3

Query:  333 MNAMFATKISMLQHVCVVPLARATRHRXXXXXXXXXXXXTPSRNLTVSSPTSSARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREESQSDVAVAC 1610
            MNAMFATKISMLQHVCVVPLARATRHRSFTVSASASTTVTPSRNLTVSSPTSSARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREESQSDVAVAC
Sbjct:    1 MNAMFATKISMLQHVCVVPLARATRHRSFTVSASASTTVTPSRNLTVSSPTSSARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREESQSDVAVAC 426

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BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: A0A0D2TYF5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G319500 PE=3 SV=1)

HSP 1 Score: 848.195 bits (2190), Expect = 0.000e+0
Identity = 417/426 (97.89%), Postives = 422/426 (99.06%), Query Frame = -3

Query:  333 MNAMFATKISMLQHVCVVPLARATRHRXXXXXXXXXXXXTPSRNLTVSSPTSSARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREESQSDVAVAC 1610
            M AMFATKISMLQHVCVVPLARATRHRSFT+SASASTT TPSRNLTVSSPTSS+RAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLI+AGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAH+CLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHA NQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDS EQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPL+IESDREESQSDVAVAC
Sbjct:    1 MKAMFATKISMLQHVCVVPLARATRHRSFTISASASTTGTPSRNLTVSSPTSSSRAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIEAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHRCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSAEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLLIESDREESQSDVAVAC 426

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BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: A0A061FM31_THECC (Radical SAM superfamily protein OS=Theobroma cacao GN=TCM_042752 PE=3 SV=1)

HSP 1 Score: 761.911 bits (1966), Expect = 0.000e+0
Identity = 384/455 (84.40%), Postives = 406/455 (89.23%), Query Frame = -3

Query:  333 IQRGLLLF------NSKTMNAMFATKISMLQHVCVVPLARATRHRXXXXXXXXXXXXTPSRNLTVSSPTSSA--RAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQV---------LAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREESQSDVAVAC 1646
            +++G  LF      +S   +AM  TK+SMLQHVC VPL RA R R FTVS +A+    PSRNLTVS P+SS+  R PHVDPRVLLGMSE DLQQLAV+FGQQ YRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDL++AGW IGRSPIYHTVTAADGTVKLL+KLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNL+RHEIIEQV         LAIEDIFK RVTNVVFMGMGEPMLNLKSVLDAH+CLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHA NQ+LREMIVPSAKSYPLDAIMKDCRDYF ETSRRVSFEYALLAGVNDSVEQA ELAELLHEWGR YHVNLIPFNPIEGSEYRRP KK V AFAGALESRK+TVSIRQTRGLDASAACGQLRNNFQK+PL+ ESD E+SQS+VAVAC
Sbjct:    3 LKQGFRLFGHQRTKSSGEASAMITTKMSMLQHVCSVPLTRAIRPRPFTVSGAATAVT-PSRNLTVSFPSSSSSLRTPHVDPRVLLGMSEQDLQQLAVDFGQQRYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLMEAGWTIGRSPIYHTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLRRHEIIEQVYDPRLCEQVLAIEDIFKRRVTNVVFMGMGEPMLNLKSVLDAHRCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQELREMIVPSAKSYPLDAIMKDCRDYFVETSRRVSFEYALLAGVNDSVEQAVELAELLHEWGRNYHVNLIPFNPIEGSEYRRPYKKAVLAFAGALESRKVTVSIRQTRGLDASAACGQLRNNFQKNPLLTESDSEQSQSNVAVAC 456

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BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: A0A067L960_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01452 PE=3 SV=1)

HSP 1 Score: 697.582 bits (1799), Expect = 0.000e+0
Identity = 342/419 (81.62%), Postives = 365/419 (87.11%), Query Frame = -3

Query:  333 ISMLQHVCVVPLARATRHRXXXXXXXXXXXXTPSRNL-TVSSPTSSARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREESQSDVAVAC 1586
            ++MLQHVC VPLARA R        S       SR L T SS  S  R  HVDPRVLLGMSE +LQQLA +FGQQSYRGKQLHHLIY+RK KEIQDFS LPQAFR++L +AGWKIGRSPIY TVTAADGTVKLL+KLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNL+RHEI+EQVLAIED+F HRVTNVVFMGMGEPMLNLKSVL+AH+CLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLA+SLHA NQKLRE IVPSAK+YPLDAIMKDCR YF ETSRRVSFEYALLAGVNDS E A ELAELL +WGRG HVNLIPFNPIEGS+Y+RP KK V AF  ALESRKITVSIRQTRGLDASAACGQLRN FQKSPL+ +SD    Q+D+AV C
Sbjct:    1 MAMLQHVCSVPLARAVRQPHSFTIVS-------SRKLRTTSSAVSPPRTSHVDPRVLLGMSEPELQQLANDFGQQSYRGKQLHHLIYERKVKEIQDFSQLPQAFRHELEEAGWKIGRSPIYRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLKRHEIVEQVLAIEDVFNHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLALSLHAPNQKLRETIVPSAKAYPLDAIMKDCRGYFLETSRRVSFEYALLAGVNDSTEHAIELAELLQKWGRGSHVNLIPFNPIEGSDYQRPQKKAVRAFTAALESRKITVSIRQTRGLDASAACGQLRNEFQKSPLLADSDSLPLQTDIAVLC 412

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BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: B9T4I0_RICCO (Catalytic, putative OS=Ricinus communis GN=RCOM_0000920 PE=3 SV=1)

HSP 1 Score: 688.723 bits (1776), Expect = 0.000e+0
Identity = 333/427 (77.99%), Postives = 379/427 (88.76%), Query Frame = -3

Query:  333 MFATKISMLQHVCVVPLARATRHRXXXXXXXXXXXXTPSRNLTVSSPTSSARAP----HVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREESQSDVAVAC 1601
            M  T ++ML HVC +P+ARA  HR  +++A +      SR+L+ ++  ++A +P     VDP VLLGMSE +LQQLA +FGQQSYRGKQLHHLIY+RK KEIQDFS LPQAFRN+L +AGW++GRSPIY TVTAADGTVKLL+KLEDNRLIETVGIP++DEKG +RLTAC+SSQVGCPLRCSFCATGKGGYSRNL+RHEI+EQVLAIE+IFK+RVTNVVFMGMGEPMLNLKSVL+AH+CLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLA+SLHA NQKLRE IVPSAKSYPLDAIMKDCRDYF ETSRRVSFEYALLAGVND  E A+ELAELLHEWGRG HVNLIPFNPIEGS+Y+RP+KK V AFA ALESRKITVS+RQTRG+DASAACGQLRN FQKSPL+ +SD  +S+ ++AVAC
Sbjct:    1 MITTSMAMLSHVCSLPIARAI-HRPLSLTAIS------SRSLSTATSATAAASPPRGSQVDPHVLLGMSEPELQQLAADFGQQSYRGKQLHHLIYQRKVKEIQDFSQLPQAFRNELQEAGWRVGRSPIYRTVTAADGTVKLLIKLEDNRLIETVGIPIQDEKGPVRLTACISSQVGCPLRCSFCATGKGGYSRNLKRHEIVEQVLAIEEIFKNRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLALSLHAPNQKLRETIVPSAKSYPLDAIMKDCRDYFLETSRRVSFEYALLAGVNDRAEHAKELAELLHEWGRGSHVNLIPFNPIEGSDYQRPSKKAVQAFAAALESRKITVSVRQTRGMDASAACGQLRNEFQKSPLLADSDSLQSEPEIAVAC 420

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BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: B9HMI5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s05660g PE=3 SV=2)

HSP 1 Score: 678.322 bits (1749), Expect = 0.000e+0
Identity = 340/452 (75.22%), Postives = 381/452 (84.29%), Query Frame = -3

Query:  333 KTMNAMFATKISMLQHVCVVPLARATRHRXXXXXXXXXXXXTPSRNLTVSSPTSSARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQ-----------------------VLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREESQ-SDVAVAC 1616
            + +  M AT +S+LQHVC VP+ARA R RS T+ +S       S + T SS ++++RA  VDP VLLGMSE +LQQLA + GQQSYRGKQLHHLIY+RK KEIQDFS LP  FRNDL +AGWK+GRSPI+ TVTAADGTVKLL++LEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGG+SRNLQRHEI+EQ                       VLA+E+IFKHRVTNVVFMGMGEPMLNLKSVL+AH+CLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLA+SLHA NQKLRE IVPSAKSYPLDAIMKDC++YF ETSRRVSFEYALLAGVND VE A+ELAELLH+WGRG+HVNLIPFNPI+GS+Y+RP+KK + AFA  LESRK+TVS+RQTRGLDASAACGQLRN FQKSPL+I SD  ESQ  +VAVAC
Sbjct:   64 RQLTTMIATSMSLLQHVCSVPIARAMRPRSVTIISSR------SLSTTTSSSSTTSRASQVDPHVLLGMSEPELQQLATDLGQQSYRGKQLHHLIYQRKVKEIQDFSQLPLVFRNDLQEAGWKVGRSPIFQTVTAADGTVKLLIRLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGFSRNLQRHEIVEQHRLGSSGTTSTCSKLYLHVLYAQVLAVEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLALSLHAPNQKLRETIVPSAKSYPLDAIMKDCKEYFLETSRRVSFEYALLAGVNDRVEHAKELAELLHQWGRGHHVNLIPFNPIQGSDYKRPHKKAIQAFAAVLESRKVTVSVRQTRGLDASAACGQLRNEFQKSPLVINSDSLESQPENVAVAC 509

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BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: M5X040_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006433mg PE=3 SV=1)

HSP 1 Score: 677.937 bits (1748), Expect = 0.000e+0
Identity = 325/423 (76.83%), Postives = 363/423 (85.82%), Query Frame = -3

Query:  333 MFATKISMLQHVCVVPLARATRHRXXXXXXXXXXXXTPSRNLTVSSPTSSARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREESQSDVAVAC 1601
            M AT  S++Q VC VPLARA R R+  V            ++ +S+  + ++A   D RVLLG+SE +LQQLA++  QQSYRGKQLHHLIYKRK K+IQDFS +P AFRN+L +AGWK+GRSPIY +VTAADGTVKLL+KLEDNRLIETVGIPV+DEKG MRLTACVSSQVGCPLRCSFCATGKGG+SRNL+ HEI+EQVLA+E+IF HRVTNVVFMGMGEPM+NLKSVL AHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHA NQKLRE IVPSAK+YPL A+MKDCRDYF ETSRRVSFEYALLAGVND+VE A ELAELLHEWGRGYHVNLIPFNPIEGSEY+RP+KK V AFA ALES ++TVS RQTRGLDA AACGQLRN FQKSPL  +SD  + + DVAVAC
Sbjct:    1 MTATSTSLIQRVCSVPLARAVRTRAMAVV-----------SMNLSTTPARSQALRADSRVLLGLSEPELQQLALDLKQQSYRGKQLHHLIYKRKIKDIQDFSQVPLAFRNELEEAGWKVGRSPIYQSVTAADGTVKLLIKLEDNRLIETVGIPVKDEKGVMRLTACVSSQVGCPLRCSFCATGKGGFSRNLKMHEIVEQVLAVEEIFNHRVTNVVFMGMGEPMMNLKSVLAAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQKLRETIVPSAKAYPLSALMKDCRDYFVETSRRVSFEYALLAGVNDAVEHAVELAELLHEWGRGYHVNLIPFNPIEGSEYQRPSKKAVQAFAAALESNRVTVSTRQTRGLDADAACGQLRNKFQKSPLPTDSDNLQPEEDVAVAC 412

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BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: D7TLU9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g01070 PE=3 SV=1)

HSP 1 Score: 670.618 bits (1729), Expect = 0.000e+0
Identity = 325/418 (77.75%), Postives = 360/418 (86.12%), Query Frame = -3

Query:  333 ISMLQHVCVVPLARATRHRXXXXXXXXXXXXTPSRNLTVSSPTSSARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREESQSDVAVAC 1586
            +++LQH+C  PL RA R RS  +S         SR  T+S+  S  R  HVD  VLLGMSE +LQQL+++ GQQSYRGKQLHHLIYKRK KEIQ FS LPQAFRNDL + GW++GRS IY +VTAADGTVKLL+KL DNRL+ETVGIPVE +KGS RLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEI+EQVLAIE+IFK RVTNVVFMGMGEPMLNLKSV++AH+CLNKDVQIGQRMITIS+VGVPNTIKKLAS+KLQSTLA+SLHA NQKLRE IVPSAKSYPLDAIMKDCRDYF ETSRRVSFEY LLAGVND+VE A ELAELLHEWG GYHVNLIPFNPIEGSE++RP  K V AFAGALESRK+TVS+RQTRGLDASAACGQLRN FQK PL  +S+  +SQ DV +AC
Sbjct:    1 MALLQHLCSAPLTRAIRSRSLALS---------SR--TMSTTLSPTRVAHVDSHVLLGMSEQELQQLSLDLGQQSYRGKQLHHLIYKRKVKEIQHFSQLPQAFRNDLQEGGWRVGRSSIYQSVTAADGTVKLLIKLADNRLVETVGIPVEHDKGSFRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIVEQVLAIEEIFKQRVTNVVFMGMGEPMLNLKSVIEAHRCLNKDVQIGQRMITISSVGVPNTIKKLASYKLQSTLAISLHAPNQKLRETIVPSAKSYPLDAIMKDCRDYFLETSRRVSFEYTLLAGVNDAVEHAIELAELLHEWGPGYHVNLIPFNPIEGSEFQRPYNKAVQAFAGALESRKVTVSVRQTRGLDASAACGQLRNEFQKIPLQSDSNNLQSQLDVPIAC 407

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BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: W9SVM6_9ROSA (Ribosomal RNA large subunit methyltransferase N OS=Morus notabilis GN=L484_010740 PE=3 SV=1)

HSP 1 Score: 665.996 bits (1717), Expect = 0.000e+0
Identity = 322/445 (72.36%), Postives = 369/445 (82.92%), Query Frame = -3

Query:  333 FATKISMLQHVCVVPLARATRHRXXXXXXXXXXXXTPS---RNLTVSSPTSSARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNK--------------------DVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREESQSDVAVAC 1598
              T ++ +QHVC    ARA R RS   +        PS   RNL+ +  T+ +RA + D RVLLG+SE +LQQLAV+ GQQSYRGKQLHH IY+RK + ++DFS LP+AFRN+L  AGW +GRSPIY +VTA DGT+KLL+KL+DNRLIETVGIPV+D+KGSMRLTACVSSQVGCPLRCSFCATGKGG+SRNLQ HEI+EQVLAIE+ FKHRVTNVVFMGMGEPMLN+K+VL+AH+CLNK                    DVQIGQRMITISTVGVPNTIK+LASHKLQSTLA+SLHA NQKLRE IVPSAK+YPLDAIMKDC++YF ETSRRVSFEYALLAGVND+VE A ELAELLH+WGRGYHVNLIPFNPIEGSEY+RP+KK   AFA  LESRKITVSIRQTRGL+A+AACGQLRN FQKSPL+++SD E+SQSDVAVAC
Sbjct:    1 MGTPMAFIQHVCSASFARAVRTRSVAANTII-----PSHKRRNLSTTLTTTPSRAQNADSRVLLGLSETELQQLAVDLGQQSYRGKQLHHFIYQRKVRNVEDFSQLPKAFRNELRDAGWGVGRSPIYQSVTAPDGTIKLLIKLDDNRLIETVGIPVKDDKGSMRLTACVSSQVGCPLRCSFCATGKGGFSRNLQAHEIVEQVLAIEETFKHRVTNVVFMGMGEPMLNMKAVLEAHRCLNKTVKSPLKRKPVCDGTTVFLKDVQIGQRMITISTVGVPNTIKRLASHKLQSTLAISLHAPNQKLREAIVPSAKAYPLDAIMKDCKNYFLETSRRVSFEYALLAGVNDAVEHATELAELLHQWGRGYHVNLIPFNPIEGSEYKRPSKKVALAFAATLESRKITVSIRQTRGLEANAACGQLRNKFQKSPLVLDSDNEQSQSDVAVAC 440

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BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: A0A068TXM0_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_4 OS=Coffea canephora GN=GSCOC_T00029892001 PE=3 SV=1)

HSP 1 Score: 660.988 bits (1704), Expect = 0.000e+0
Identity = 311/418 (74.40%), Postives = 362/418 (86.60%), Query Frame = -3

Query:  333 ISMLQHVCVVPLARATRHRXXXXXXXXXXXXTPSRNLTVSSPTSSARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREESQSDVAVAC 1586
            +++ QHV   P ARA R R+ TV+ S  T  +  +    SS         +  +VLLGMSE +LQQLAV+FGQ+ YRGKQLHHL+YKRK K+IQDFS +P AFRN+L +AGW++GRSP+Y  VTA+DGT+KLL+KLEDNRL+ETVGIPVED+KGS+RLTACVSSQVGCPLRCSFCATGKGG++RNL+RHEI+EQVLAIED+FKHRVTNVVFMGMGEPMLNLK VL+AH+CLNKD+QIGQRMITISTVGVPNTIKKLASHKLQSTLA+SLHA NQKLRE IVPSAKSYPL+ IMKDCRDYF ETSRRVSFEY LLAGVND++E A ELAELLHEWGR YHVNLIPFNP+EGS+Y+RP KK+  AFA ALESRKITVS+RQTRGLDASAACGQLRN FQKSPL+  ++ ++S S++AV+C
Sbjct:    1 MAIFQHVVTAPFARAVRFRTLTVACSTVTLPSLKKKAEASSKVD------LQSQVLLGMSEQELQQLAVDFGQERYRGKQLHHLLYKRKVKQIQDFSQVPLAFRNELQEAGWRVGRSPVYKNVTASDGTIKLLIKLEDNRLVETVGIPVEDDKGSVRLTACVSSQVGCPLRCSFCATGKGGFARNLKRHEIVEQVLAIEDVFKHRVTNVVFMGMGEPMLNLKEVLEAHRCLNKDIQIGQRMITISTVGVPNTIKKLASHKLQSTLAISLHAPNQKLRESIVPSAKSYPLEVIMKDCRDYFLETSRRVSFEYTLLAGVNDTIEHALELAELLHEWGRSYHVNLIPFNPVEGSDYQRPYKKSTLAFAAALESRKITVSVRQTRGLDASAACGQLRNQFQKSPLLTGAEDQQSNSEIAVSC 412

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BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy Swiss-Prot
Match: RLMN_ACAM1 (Probable dual-specificity RNA methyltransferase RlmN OS=Acaryochloris marina (strain MBIC 11017) GN=rlmN PE=3 SV=1)

HSP 1 Score: 381.333 bits (978), Expect = 3.047e-126
Identity = 189/340 (55.59%), Postives = 243/340 (71.47%), Query Frame = -3

Query:  408 LLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGY--HVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLR 1421
            LLG S+  L   A  + Q +YRG+Q+H  IY++    + D + LP+ +R ++  A   +GRS I+H   A DGTVK LLKL D ++IETVGIP +      RLT CVSSQVGCP+ C FCATGKG Y RNL  HEI++QVL +++ F+ RV NVVFMGMGEP+LNL+ VL A + LN+DV IGQR +T+STVG+P  I KLA H+LQ TLAVSLHASNQ++R  +VPSAK YPL+ ++KDCR Y  +T RRV+FEY +L+GVND  E A ELA  L    RG+  HVNLIP+NPI   +Y+RP +K +  F  +L+S+ IT SIR++RGLD  AACGQLR
Sbjct:   13 LLGASKAQLTHWAQTYQQPAYRGQQVHQWIYQKGVHSLSDITVLPKQWRTEI--ADIPVGRSQIHHRSAAQDGTVKYLLKLADGQIIETVGIPTQK-----RLTVCVSSQVGCPMGCDFCATGKGEYQRNLACHEIVDQVLTVQEDFQQRVGNVVFMGMGEPLLNLEQVLAAVRSLNQDVGIGQRSLTVSTVGIPKQILKLAQHQLQITLAVSLHASNQRIRTQLVPSAKHYPLEKLLKDCRAYVTQTGRRVTFEYIVLSGVNDQTEHALELAHHL----RGFQSHVNLIPYNPISEVDYQRPTQKQLQQFLNSLQSQHITASIRRSRGLDKDAACGQLR 341

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BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy Swiss-Prot
Match: RLMN_THEEB (Probable dual-specificity RNA methyltransferase RlmN OS=Thermosynechococcus elongatus (strain BP-1) GN=rlmN PE=3 SV=1)

HSP 1 Score: 374.785 bits (961), Expect = 5.693e-124
Identity = 189/342 (55.26%), Postives = 239/342 (69.88%), Query Frame = -3

Query:  405 VLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGY--HVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRN 1424
            VLLG S  +L+      GQ  YRG+QLH  +Y++ A+ +Q+ +  P+ +R  L  A  +IGRS I +   A DGTVKLLL L D   IETVGIP  D     RLT CVSSQVGCP+ C FCATGKGGY RNL  HEI++QVL I+     RV++VVFMGMGEP+LNL +VL A  CLN+D+ IGQR ITISTVG+P  I++LA H+LQ+TLAVSLHA NQ LRE ++PSAK YPL  ++ DCR Y  +T RR++FEY +LAGVND  + A ELA+LL    RG+  HVNLIP+NPI  + Y+RP  + +  F   L++  +T SIR++RGLD  AACGQLR 
Sbjct:    2 VLLGRSAAELKAWVEAQGQPGYRGQQLHQWLYRKGARSLQEITVFPKQWRAAL--ADVEIGRSEIRYRHDAQDGTVKLLLALADGETIETVGIPSSD-----RLTVCVSSQVGCPMACDFCATGKGGYRRNLACHEILDQVLTIQSEMGRRVSHVVFMGMGEPLLNLPAVLQAITCLNRDIGIGQRHITISTVGIPQQIQRLAQHQLQTTLAVSLHAPNQALREQLIPSAKHYPLSQLIADCRAYVQQTGRRITFEYTVLAGVNDRPQHAEELAQLL----RGFQSHVNLIPYNPIAEAAYQRPTDQHLRQFLSQLQALGVTASIRRSRGLDRQAACGQLRQ 332

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BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy Swiss-Prot
Match: RLMN_TRIEI (Probable dual-specificity RNA methyltransferase RlmN OS=Trichodesmium erythraeum (strain IMS101) GN=rlmN PE=3 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 1.158e-123
Identity = 190/353 (53.82%), Postives = 251/353 (71.10%), Query Frame = -3

Query:  408 TSSARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGY--HVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLR 1460
            T S + P   P  LLG+S   L +   + GQ +YRGKQL+  IY++ AK + D +   + +R ++  + + IGRS I+H   A D TVK LLKL D  +IETVGIP        RLT CVSSQVGCP+ C FCATGKGG+SRNL+ HEII+QVL +++ F+ RV+++VFMGMGEP+LN K+VL A + LN+D+ IGQR+ITIST G+ + I++LA HKLQ TLAVSLHASNQ+LRE ++PSAK YPL  ++ +CR+Y   T RR+SFEY LLA  ND  + ARELA+ +    RG+  HVNLIP+NPI   +Y+RP ++ +  FA AL  + I VSIR +RGL+A+AACGQLR
Sbjct:    2 TQSFKTPTQTP--LLGLSLAKLTEWVQQQGQPAYRGKQLYQWIYQKGAKSLADITVFSKQWREEI--SNFPIGRSVIHHRSVAPDATVKYLLKLSDGNIIETVGIPTYK-----RLTVCVSSQVGCPMACDFCATGKGGFSRNLEAHEIIDQVLTVQEDFERRVSHIVFMGMGEPLLNTKNVLAAVRSLNQDLGIGQRLITISTSGIRDRIRQLAQHKLQVTLAVSLHASNQRLREHLIPSAKFYPLADLISECREYVKITKRRISFEYILLASFNDLPDHARELAKNM----RGFQCHVNLIPYNPISEVDYQRPTQEMIKTFANALAEQNIAVSIRYSRGLEANAACGQLR 341

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BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy Swiss-Prot
Match: RLMN_SYNJA (Probable dual-specificity RNA methyltransferase RlmN OS=Synechococcus sp. (strain JA-3-3Ab) GN=rlmN PE=3 SV=1)

HSP 1 Score: 373.244 bits (957), Expect = 5.655e-123
Identity = 187/350 (53.43%), Postives = 247/350 (70.57%), Query Frame = -3

Query:  390 PRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLH---EWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKS 1430
            P  LLG S   L+  AVE GQ +YRG+QLH  +Y +  + +Q+ +  P+A+R  L +  + +GRS +   + + DGTVK LL+L D  LIETVGIP      + RLT CVSSQVGCP+ C+FCATGK GY RNL+ HEI++QVL +++ F  RV++VVFMGMGEP+LN  +V+ A + LN+D+ IGQR IT+STVGVP  I  LA   LQ TLAVSLHA NQ+LR+ ++PSA  YPLDA+++DCRDY   + RR+SFEY LLAGVND    AR+LA LL    + G   HVNLIP+NPI  ++Y+RP+   V+ F   LE   + VS+RQTRGLD++AACGQLR +F ++
Sbjct:    5 PLPLLGQSLAALKDWAVEQGQPAYRGQQLHTWLYHKGIRSLQEVTVFPKAWREALQE--YPVGRSQVVQRIESRDGTVKFLLQLADGELIETVGIPT-----ARRLTVCVSSQVGCPMACNFCATGKMGYRRNLKLHEILDQVLTVQEDFGRRVSHVVFMGMGEPLLNRDTVVQAIRSLNQDIGIGQRHITLSTVGVPRQIPWLAQQDLQITLAVSLHAPNQELRQQLIPSAAHYPLDALIQDCRDYMLCSGRRISFEYTLLAGVNDLPIHARQLAHLLRQASQAGARLHVNLIPYNPIAEADYQRPHPTRVAEFVRLLEEHHVQVSVRQTRGLDSNAACGQLRGSFLRA 347

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BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy Swiss-Prot
Match: RLMN_CYAA5 (Probable dual-specificity RNA methyltransferase RlmN OS=Cyanothece sp. (strain ATCC 51142) GN=rlmN PE=3 SV=1)

HSP 1 Score: 369.777 bits (948), Expect = 7.280e-122
Identity = 187/338 (55.33%), Postives = 238/338 (70.41%), Query Frame = -3

Query:  408 LLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLR 1421
            LLG S   L     + GQ +YRGKQLH  +Y++  + + + S  P+A+R +L    + IGRS I H   A D T K LL L D  +IETVGIP      S RLT CVSSQVGCP+ C FCATGKGGY+RNL   EI++QVL +++ F+ RV++VVFMGMGEP+LNLK V+ A + LN+DV IGQR +TISTVGVP  I +LA H+LQ T AVSLHA+NQ LRE ++PSAKSYPL  ++ DCR Y   T RRV+FEY LL GVND  EQ  +LA+ L   G   HVNLIP+NPIE ++Y+RP+ ++++ F   LE  KI VS+R +RGL+A+AACGQLR
Sbjct:    8 LLGKSVGQLTDWVKQQGQPAYRGKQLHQWLYQKGVRSLTEISVFPKAWREEL--KDYPIGRSNIVHCTIAPDQTRKYLLSLGDGLIIETVGIPT-----SKRLTVCVSSQVGCPMNCDFCATGKGGYTRNLTCAEIVDQVLTVQEDFQRRVSHVVFMGMGEPLLNLKEVIKAVKILNQDVGIGQRSLTISTVGVPKKILELAHHQLQVTFAVSLHAANQTLREQLIPSAKSYPLPKLLADCRKYVEITGRRVTFEYILLGGVNDLPEQGIQLAKCLT--GFQSHVNLIPYNPIEEADYQRPDGESINRFKSILEEHKIAVSVRYSRGLEANAACGQLR 336

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy Swiss-Prot
Match: RLMN_SYNJB (Probable dual-specificity RNA methyltransferase RlmN OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=rlmN PE=3 SV=1)

HSP 1 Score: 369.777 bits (948), Expect = 9.107e-122
Identity = 186/350 (53.14%), Postives = 240/350 (68.57%), Query Frame = -3

Query:  390 PRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRG---YHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKS 1430
            P  LLG S   L+  AV  GQ +YRG+QLH  IY++  + ++  +  P+A+R  +    + +GRS I     A DGTVK LL L D +LIETVGIP      + RLT CVSSQVGCP+ C FCATGK GY RNL+ HEI++QVL +++ F  RV++VVFMGMGEP+LN  +V+ A + LN+D+ IGQR IT+STVGVP  I  LA   LQ TLAVSLHA NQ LR+ ++PSA  YPLD +++DCRDY   T RRVSFEY LL+GVND    AR+LA+LL +  R     HVNLIP+NPI  ++Y+RP+   V  F   LE  ++  ++RQTRGLD +AACGQLR +F +S
Sbjct:    5 PIPLLGQSLSALKDWAVAQGQPAYRGQQLHAWIYQKGIRSLEQVTVFPRAWREAV--QSYPVGRSRIVQRTEARDGTVKFLLGLADGQLIETVGIPT-----AKRLTVCVSSQVGCPMACDFCATGKMGYRRNLELHEILDQVLTVQEDFGRRVSHVVFMGMGEPLLNRDTVVQAIRSLNQDIGIGQRHITLSTVGVPRQIAWLAQQDLQVTLAVSLHAPNQDLRQRLIPSASHYPLDTLIQDCRDYMLRTGRRVSFEYTLLSGVNDLPIHARQLAQLLQQASRSGVQLHVNLIPYNPISEADYQRPHPTRVREFVRQLEQHQVRATVRQTRGLDGNAACGQLRGSFLRS 347

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy Swiss-Prot
Match: RLMN_CYAP8 (Probable dual-specificity RNA methyltransferase RlmN OS=Cyanothece sp. (strain PCC 8801) GN=rlmN PE=3 SV=1)

HSP 1 Score: 369.007 bits (946), Expect = 1.129e-121
Identity = 186/343 (54.23%), Postives = 240/343 (69.97%), Query Frame = -3

Query:  408 VDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLR 1436
            V    LLG S  +L Q   + GQ +YRGKQLH  +Y++ A+ + + S  P+ +R  LI   + IGRS I +   A D T K LL L D  +IETVGIP      + RLT CVSSQVGCP+ C FCATGKGGY R+L+ HEI++QVL +++ F+ RV++VVFMGMGEP+LNL+ V+ + + LN+D+ IGQR +TISTVG+P  I +LA H LQ TLAVSLHASNQ LRE ++PSA+ Y L  ++ DCR+Y   T RR+SFEY LL GVND  EQA ELA LL   G   HVNLIP+NPI+ ++Y+RPN+  +  F   LE  KI VS+R +RGL+A+AACGQLR
Sbjct:    3 VTEETLLGKSLDELTQWVEKQGQPTYRGKQLHQWLYEKGARSLDEISVFPKTWREKLIN--YPIGRSTIDYRTVAPDATRKYLLCLGDGLIIETVGIPT-----AKRLTVCVSSQVGCPMACDFCATGKGGYQRHLRAHEIVDQVLTVQEDFQRRVSHVVFMGMGEPLLNLEEVVKSVKILNQDIGIGQRSLTISTVGLPQKIIQLAHHHLQVTLAVSLHASNQPLRETLIPSAQHYTLKNLLADCREYVNITGRRISFEYVLLGGVNDLPEQAIELANLLK--GFQSHVNLIPYNPIDEADYQRPNQTQIQTFVQVLEQHKIAVSVRYSRGLEANAACGQLR 336

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy Swiss-Prot
Match: RLMN_NOSP7 (Probable dual-specificity RNA methyltransferase RlmN OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rlmN PE=3 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 8.742e-121
Identity = 180/343 (52.48%), Postives = 244/343 (71.14%), Query Frame = -3

Query:  408 LLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGS---MRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGY--HVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLR 1421
            LLG S  +L     + GQ +YRGKQLH  IY +  + + D S   + +R ++  A   IGRS +++   A DGTVK LL+L D ++IETVGIP   E+G     RLT CVS+QVGCP+ C FCATGKGGY RNL RHEII+QVL +++ F+ RV+NVVFMG+GEP+LN ++VL A + LN+D+ IGQR +T+STVG+ + I++ A + LQ TLAVSLHA NQ LRE ++PSA++YPL+ ++ +CR+Y   T RRV+FEY LLAGVND  E A EL++ +    RG+  HVNLIP+NPI+  +Y+RPN+  + AF   L+ +   VS+R +RGL+A AACGQLR
Sbjct:   24 LLGASVAELSAWVQQQGQPAYRGKQLHEWIYDKGVRSLADISVFSKQWRAEV--AEIPIGRSTLHYRSVAPDGTVKYLLRLTDGQIIETVGIPTFAERGEGPKARLTVCVSTQVGCPMACDFCATGKGGYKRNLARHEIIDQVLTVQEDFQQRVSNVVFMGLGEPLLNTENVLAALKSLNQDIGIGQRSLTVSTVGIRDRIRQFAQNNLQITLAVSLHAPNQALREKLIPSARAYPLEELLAECREYVEITGRRVTFEYVLLAGVNDLPEHALELSKCM----RGFQSHVNLIPYNPIQEVDYKRPNRDRIEAFVNVLKQQNTAVSVRYSRGLEADAACGQLR 360

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy Swiss-Prot
Match: RLMN_MICAN (Probable dual-specificity RNA methyltransferase RlmN OS=Microcystis aeruginosa (strain NIES-843) GN=rlmN PE=3 SV=1)

HSP 1 Score: 365.925 bits (938), Expect = 1.565e-120
Identity = 182/340 (53.53%), Postives = 240/340 (70.59%), Query Frame = -3

Query:  402 LLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNN 1421
            LL  S  +L     + GQ +YRGKQLH  +Y++    + D S  PQ +R+ +  A + IGRS I++   A D T K LLKL D  +IE VGIP E      RLT CVSSQVGCP+ C FCATGKGG++RNL+ HEI++QVL +++ F+ RV++VVFMGMGEP+LN+  V+ A  CLNKDV IGQR +TISTVG+P+ IK+LA H LQ T AVSLHASNQ++R  ++PSA  Y L  +++DC++Y   T RRV+FEY LLAGVND  E ARELA+L+   G   HVNLIP+NPI+  +Y+RP++K + AF   LE  K+ V++R +RGL   AACGQLR++
Sbjct:    3 LLAKSLEELTDWVKDQGQPAYRGKQLHQWLYEKGVHSLADISVFPQEWRSKM--ADYPIGRSLIHYRSVAPDRTRKYLLKLADGLIIEAVGIPSEK-----RLTVCVSSQVGCPMACDFCATGKGGFTRNLKAHEIVDQVLTVQEDFQQRVSHVVFMGMGEPLLNIPEVVTAIHCLNKDVGIGQRCLTISTVGLPHKIKQLAEHNLQITFAVSLHASNQQVRAKLIPSADHYLLSNLIQDCQEYVQITGRRVTFEYILLAGVNDLPEHARELAKLVK--GFQSHVNLIPYNPIQEVDYQRPDEKRIKAFKTILEQEKVAVTVRYSRGLATDAACGQLRSS 333

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BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy Swiss-Prot
Match: RLMN_ANAVT (Probable dual-specificity RNA methyltransferase RlmN OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rlmN PE=3 SV=1)

HSP 1 Score: 363.999 bits (933), Expect = 1.630e-119
Identity = 186/360 (51.67%), Postives = 250/360 (69.44%), Query Frame = -3

Query:  405 LTVSSPTSSARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGY--HVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRN 1478
            +T  +P+S  + P +    LLG S  +L     + GQ +YRGKQLH  IY +  + + D S   + +R  +  A   IGRS I+H   A+DGTVK LL+L D  ++ETVGIP +      RLT CVS+QVGCP+ C FCATGKGGY RNL+RHEI++QVL +++ F+ RV++VVFMGMGEP+LN ++VL A + LN+DV IGQR +T+STVG+ + I +LA H LQ TLAVSLHA NQ LRE ++PSA+SY ++ ++ +CR+Y A T RR+SFEY LLAGVND  E A EL++ L    RG+  HVNLIP+NPI   +Y+RP+   + AF   L+ + I VS+R +RGL+A AACGQLR 
Sbjct:    6 VTQLTPSSQPQQPCLP---LLGASVTELTSWVQQQGQPAYRGKQLHDWIYHKGVRSLTDISVFSKQWRAAV--ADVPIGRSTIHHRSVASDGTVKYLLQLSDGEIVETVGIPTDK-----RLTVCVSTQVGCPMACDFCATGKGGYKRNLERHEIVDQVLTVQEDFQQRVSHVVFMGMGEPLLNTENVLAALRSLNQDVGIGQRSLTLSTVGIRDRISQLAEHHLQVTLAVSLHAPNQALREQLIPSARSYHIEDLLAECREYVAITGRRISFEYILLAGVNDLPEHALELSKHL----RGFQNHVNLIPYNPISEVDYKRPSGDRIQAFLTVLQQQHIAVSVRYSRGLEADAACGQLRT 351

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0P4H5_GOSAR	0.000e+0	100.00	Ribosomal RNA large subunit methyltransferase N OS...	[more]
A0A0D2TYF5_GOSRA	0.000e+0	97.89	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061FM31_THECC	0.000e+0	84.40	Radical SAM superfamily protein OS=Theobroma cacao...	[more]
A0A067L960_JATCU	0.000e+0	81.62	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
B9T4I0_RICCO	0.000e+0	77.99	Catalytic, putative OS=Ricinus communis GN=RCOM_00...	[more]
B9HMI5_POPTR	0.000e+0	75.22	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
M5X040_PRUPE	0.000e+0	76.83	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
D7TLU9_VITVI	0.000e+0	77.75	Putative uncharacterized protein OS=Vitis vinifera...	[more]
W9SVM6_9ROSA	0.000e+0	72.36	Ribosomal RNA large subunit methyltransferase N OS...	[more]
A0A068TXM0_COFCA	0.000e+0	74.40	Coffea canephora DH200=94 genomic scaffold, scaffo...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
RLMN_ACAM1	3.047e-126	55.59	Probable dual-specificity RNA methyltransferase Rl...	[more]
RLMN_THEEB	5.693e-124	55.26	Probable dual-specificity RNA methyltransferase Rl...	[more]
RLMN_TRIEI	1.158e-123	53.82	Probable dual-specificity RNA methyltransferase Rl...	[more]
RLMN_SYNJA	5.655e-123	53.43	Probable dual-specificity RNA methyltransferase Rl...	[more]
RLMN_CYAA5	7.280e-122	55.33	Probable dual-specificity RNA methyltransferase Rl...	[more]
RLMN_SYNJB	9.107e-122	53.14	Probable dual-specificity RNA methyltransferase Rl...	[more]
RLMN_CYAP8	1.129e-121	54.23	Probable dual-specificity RNA methyltransferase Rl...	[more]
RLMN_NOSP7	8.742e-121	52.48	Probable dual-specificity RNA methyltransferase Rl...	[more]
RLMN_MICAN	1.565e-120	53.53	Probable dual-specificity RNA methyltransferase Rl...	[more]
RLMN_ANAVT	1.630e-119	51.67	Probable dual-specificity RNA methyltransferase Rl...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006638	Elongator protein 3/MiaB/NifB	SMART	SM00729	MiaB	coord: 173..382 e-value: 0.0031 score: 11.2
IPR013785	Aldolase-type TIM barrel	GENE3D	3.20.20.70		coord: 174..387 e-value: 5.5E-16 score: 58.1
IPR004383	Ribosomal RNA large subunit methyltransferase RlmN/Cfr	TIGRFAM	TIGR00048	TIGR00048	coord: 71..410 e-value: 1.7E-118 score: 393.6
IPR004383	Ribosomal RNA large subunit methyltransferase RlmN/Cfr	PANTHER	PTHR30544	23S RRNA METHYLTRANSFERASE	coord: 6..433
IPR007197	Radical SAM	PFAM	PF04055	Radical_SAM	coord: 178..341 e-value: 3.7E-16 score: 59.8
None	No IPR available	PANTHER	PTHR30544:SF6	RADICAL SAM DOMAIN-CONTAINING PROTEIN	coord: 6..433
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 31..433
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 26..30
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 16..25
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..30
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..15
None	No IPR available	SIGNALP_GRAM_POSITIVE	SignalP-TM	SignalP-TM	coord: 1..42 score: 0.52
None	No IPR available	SUPERFAMILY	102114	Radical SAM enzymes	coord: 172..369
IPR027492	Dual-specificity RNA methyltransferase RlmN	HAMAP	MF_01849	RNA_methyltr_RlmN	coord: 68..413 score: 61.949

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0008835 ID=g.arboreum_cottongen_reftransV1_0008835; Name=g.arboreum_cottongen_reftransV1_0008835; organism=Gossypium arboreum; type=contig; length=1672bp
AAAATTTAAAACTATTCATTATTTTGCGTGTGATTATTACACATAGAGAG
ATGGTATAGGACCCTCCAGTCTACTTGAATTAACCTTTGCCATCAACCGC
GTTGAAGAGTTAATTGTGTACACATAGAACCAGGGTTGCGCATGGTTTGG
TGAAGGGTATTAACACCTGAATCACGAATCATCCATGCCAAGATTGGACT
GTGAATTTACTCATGACTCATGAACCTTTAACGCCGATTTTAAGATCCCA
AACTGTTGATCCCCCTCCCCCCTCCATATAACAACATTGACGGCTAAAAT
GCACCAGCCCCAAATCATGGCATCAATATTCAACATGCAACCGCAACATC
TGATTGCGATTCCTCGCGGTCAGATTCAATAATCAGAGGACTTTTCTGGA
AGTTATTTCTTAGCTGACCGCAGGCAGCGCTTGCATCCAGACCCCTTGTC
TGACGAATACTAACAGTTATTTTACGAGACTCCAGTGCACCTGCAAATGC
TGACACTGTTTTTTTGTTCGGCCGTCGATACTCAGAGCCCTCTATCGGAT
TGAAAGGTATCAGATTGACATGATAACCACGTCCCCATTCATGCAGTAGC
TCAGCTAGTTCTCGTGCTTGTTCTACTGAATCATTCACCCCAGCTAGCAG
TGCATATTCAAAGGAGACTCGCCGACTGGTTTCAGCGAAGTAATCCCGGC
AGTCCTTCATGATTGCATCAAGGGGGTAAGATTTTGCACTGGGCACAATC
ATTTCCCTGAGTTTCTGGTTTGAAGCATGTAAGCTGACGGCCAATGTTGA
TTGAAGCTTGTGAGAAGCTAGTTTTTTTATGGTGTTTGGAACTCCCACAG
TGGAAATTGTAATCATTCTTTGCCCTATTTGAACATCCTTATTCAAGCAT
TGATGAGCATCAAGTACTGACTTCAAATTCAACATGGGCTCCCCCATTCC
CATGAACACTACATTTGTCACTCTGTGCTTGAAAATATCCTCGATAGCCA
ATACCTGCTCAATAATTTCATGCCTTTGAAGATTCCTAGAATACCCTCCC
TTTCCAGTGGCACAAAATGAACAACGCAAGGGGCAGCCTACCTGTGATGA
TACGCATGCAGTAAGACGCATCGAACCCTTTTCATCTTCAACTGGAATGC
CAACTGTTTCGATCAATCTGTTATCCTCCAACTTTAACAATAACTTAACG
GTGCCATCAGCAGCAGTAACGGTGTGGTAAATTGGAGACCTTCCTATTTT
CCATCCAGCTTTTATAAGATCATTTCTAAATGCTTGAGGCAAGTGACTGA
AATCCTGAATTTCTTTTGCCTTTCTCTTGTAAATTAAATGGTGTAGTTGC
TTCCCTCTGTAACTTTGCTGGCCGAACTCGACGGCGAGTTGTTGAAGGTC
ATGTTCAGACATGCCGAGGAGGACGCGAGGGTCCACGTGAGGGGCACGAG
CGGATGAGGTAGGGGAGGAGACGGTGAGATTGCGCGACGGCGTGACGGTG
GTGGAGGCGGAAGCGGAGACGGTGAAGGAACGGTGACGGGTGGCACGTGC
GAGAGGAACGACGCAAACGTGCTGAAGCATGGAAATTTTGGTTGCAAACA
TGGCGTTCATCGTCTTTGAATTGAAGAGCAATAACCCTCTCTGTATAATA
TCAACAGTTTCAGCCTCATGAA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR006638	Elp3/MiaB/NifB
IPR013785	Aldolase_TIM
IPR004383	rRNA_lsu_MTrfase_RlmN/Cfr
IPR007197	rSAM
IPR027492	RNA_MTrfase_RlmN

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity
GO:0051536	iron-sulfur cluster binding
GO:0008173	RNA methyltransferase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **Biological Process**
Term	Definition
GO:0006364	rRNA processing
GO:0030488	tRNA methylation
GO:0070475	rRNA base methylation

Search form

g.arboreum_cottongen_reftransV1_0008835, g.arboreum_cottongen_reftransV1_0008835 (contig) Gossypium arboreum

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