g.arboreum_cottongen_reftransV1_0013441, g.arboreum_cottongen_reftransV1_0013441 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0013441 vs. ExPASy TrEMBL
Match: A0A0D2QJN2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G024100 PE=4 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 3.500e-56 Identity = 95/99 (95.96%), Postives = 97/99 (97.98%), Query Frame = -2 Query: 1 NMQQQSSSNLPNEKNGAIPPVTKFQASKDAEQQRCTASSPSERTEKDGTRSTAEGKNTPSLLPTAPANLEGALKPRETDQRARVIRVVPHNPRSATESA 297 NMQQQSSSNLPNEKNGAIPPVTK+QASKDAEQQRC ASSPSERTEKDGTRST+EGKNTPSLLPTAPANLEGALKPRETDQR RVIRVVPHNPRSATESA Sbjct: 481 NMQQQSSSNLPNEKNGAIPPVTKYQASKDAEQQRCNASSPSERTEKDGTRSTSEGKNTPSLLPTAPANLEGALKPRETDQRTRVIRVVPHNPRSATESA 579
BLAST of g.arboreum_cottongen_reftransV1_0013441 vs. ExPASy TrEMBL
Match: A0A0D2PKS9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G024100 PE=4 SV=1) HSP 1 Score: 193.356 bits (490), Expect = 1.432e-55 Identity = 95/99 (95.96%), Postives = 97/99 (97.98%), Query Frame = -2 Query: 1 NMQQQSSSNLPNEKNGAIPPVTKFQASKDAEQQRCTASSPSERTEKDGTRSTAEGKNTPSLLPTAPANLEGALKPRETDQRARVIRVVPHNPRSATESA 297 NMQQQSSSNLPNEKNGAIPPVTK+QASKDAEQQRC ASSPSERTEKDGTRST+EGKNTPSLLPTAPANLEGALKPRETDQR RVIRVVPHNPRSATESA Sbjct: 591 NMQQQSSSNLPNEKNGAIPPVTKYQASKDAEQQRCNASSPSERTEKDGTRSTSEGKNTPSLLPTAPANLEGALKPRETDQRTRVIRVVPHNPRSATESA 689
BLAST of g.arboreum_cottongen_reftransV1_0013441 vs. ExPASy TrEMBL
Match: A0A0D2N4P6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G024000 PE=4 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 7.602e-42 Identity = 81/99 (81.82%), Postives = 87/99 (87.88%), Query Frame = -2 Query: 1 NMQQQSSSNLPNEKNGAIPPVTKFQASKDAEQQRCTASSPSERTEKDGTRSTAEGKNTPSLLPTAPANLEGALKPRETDQRARVIRVVPHNPRSATESA 297 NMQQQSSSNLP++KN AIPPV KFQASKD EQQRCTASSP ER EK+ T +TAEGKNTP +L TAPAN +GALKP ETDQR RVIRVVPHNPRSATESA Sbjct: 593 NMQQQSSSNLPSKKNVAIPPVVKFQASKDTEQQRCTASSPGERAEKNRTCNTAEGKNTPLIL-TAPANPQGALKPNETDQRTRVIRVVPHNPRSATESA 690
BLAST of g.arboreum_cottongen_reftransV1_0013441 vs. ExPASy TrEMBL
Match: A0A061GJX7_THECC (Hydroxyproline-rich glycoprotein family protein, putative OS=Theobroma cacao GN=TCM_037249 PE=4 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 3.317e-33 Identity = 68/99 (68.69%), Postives = 76/99 (76.77%), Query Frame = -2 Query: 1 NMQQQSSSNLPNEKNGAIPPVTKFQASKDAEQQRCTASSPSERTEKDGTRSTAEGKNTPSLLPTAPANLEGALKPRETDQRARVIRVVPHNPRSATESA 297 NMQ Q+S NLP+EKNGAI V KFQASKD E Q TASSP ER ++DGTRS AEGKN L TAP LEGA +P +++Q RVIRVVPHNPRSATESA Sbjct: 599 NMQHQNSCNLPSEKNGAISHVMKFQASKDTELQGSTASSPGERVQRDGTRSAAEGKNALPLFRTAPTILEGAPQPHDSEQTTRVIRVVPHNPRSATESA 697
BLAST of g.arboreum_cottongen_reftransV1_0013441 vs. ExPASy TrEMBL
Match: A0A067KDC6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07703 PE=4 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 6.718e-28 Identity = 60/99 (60.61%), Postives = 73/99 (73.74%), Query Frame = -2 Query: 1 NMQQQSSSNLPNEKNGAIPPVTKFQASKDAEQQRCTASSPSERTEKDGTRSTAEGKNTPSLLPTAPANLEGALKPRETDQRARVIRVVPHNPRSATESA 297 N+Q QSS NLPN+K+G++P V KF+ASKD E + TASSP ER + GT AEG++ L P APA EGA +P+ETD RVI+VVPHNPRSATESA Sbjct: 603 NVQHQSSCNLPNQKSGSVPQVPKFRASKDTELRGSTASSPGERVQGVGTVEAAEGRDALLLFPVAPATPEGASQPQETDMPTRVIKVVPHNPRSATESA 701
BLAST of g.arboreum_cottongen_reftransV1_0013441 vs. ExPASy TrEMBL
Match: V4UIG2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007592mg PE=4 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 2.272e-23 Identity = 54/98 (55.10%), Postives = 65/98 (66.33%), Query Frame = -2 Query: 1 MQQQSSSNLPNEKNGAIPPVTKFQASKDAEQQRCTASSPSERTEKDGTRSTAEGKNTPSLLPTAPANLEGALKPRETDQRARVIRVVPHNPRSATESA 294 M Q+SS N+P +KNGA+PPV +FQASKD E Q TASSP ER DG AEG + L +P E A +P + DQ +VI+VVPHNPRSATES Sbjct: 609 MPQESSCNVPAQKNGAVPPVRQFQASKDTELQGSTASSPGERVRGDGMGHAAEGTDALQLSTVSPVVQEAAPQPHDADQPTKVIKVVPHNPRSATESV 706
BLAST of g.arboreum_cottongen_reftransV1_0013441 vs. ExPASy TrEMBL
Match: A5BVL6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040198 PE=4 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 2.842e-23 Identity = 59/100 (59.00%), Postives = 68/100 (68.00%), Query Frame = -2 Query: 1 NMQQQSSSNLPNEKNGAIPPVTKFQASKDAEQQRCTASSPSERTEKDGTRSTAEGKNTPSLLPTAPANL-EGALKPRETDQRARVIRVVPHNPRSATESA 297 NMQ Q+S N+P K AIP KF SKD+E Q TASSPSER ++ GT TAEG++ L P APA + G +P TDQ RVIRVVPHNPRSATESA Sbjct: 1023 NMQHQNSCNVPTPKR-AIPQGVKFPMSKDSEFQGSTASSPSEREQQVGTGDTAEGRDPLPLFPMAPAAIPAGDPQPNGTDQPTRVIRVVPHNPRSATESA 1121
BLAST of g.arboreum_cottongen_reftransV1_0013441 vs. ExPASy TrEMBL
Match: A0A067GK08_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004928mg PE=4 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 7.264e-23 Identity = 53/98 (54.08%), Postives = 65/98 (66.33%), Query Frame = -2 Query: 1 MQQQSSSNLPNEKNGAIPPVTKFQASKDAEQQRCTASSPSERTEKDGTRSTAEGKNTPSLLPTAPANLEGALKPRETDQRARVIRVVPHNPRSATESA 294 M Q+SS N+P +KNGA+PPV +FQASKD E Q TASSP ER DG AEG + + +P E A +P + DQ +VI+VVPHNPRSATES Sbjct: 609 MPQESSCNVPAQKNGAVPPVRQFQASKDTELQGSTASSPGERVRGDGMGHAAEGTDALQVSTVSPVVQEAAPQPHDADQPTKVIKVVPHNPRSATESV 706
BLAST of g.arboreum_cottongen_reftransV1_0013441 vs. ExPASy TrEMBL
Match: F6H384_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g00660 PE=4 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.026e-21 Identity = 59/100 (59.00%), Postives = 68/100 (68.00%), Query Frame = -2 Query: 1 NMQQQSSSNLPNEKNGAIPPVTKFQASKDAEQQRCTASSPSERTEKDGTRSTAEGKNTPSLLPTAPANL-EGALKPRETDQRARVIRVVPHNPRSATESA 297 NMQ Q+S N+P K AIP KF SKD+E Q TASSPSER ++ GT TAEG++ L P APA + G +P TDQ RVIRVVPHNPRSATESA Sbjct: 610 NMQHQNSCNVPTPKR-AIPQGVKFPMSKDSEFQGSTASSPSEREQQVGTGDTAEGRDPLPLFPMAPAAIPAGDPQPNGTDQPTRVIRVVPHNPRSATESA 708
BLAST of g.arboreum_cottongen_reftransV1_0013441 vs. ExPASy TrEMBL
Match: M5XAQ9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002858mg PE=4 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 1.893e-20 Identity = 51/99 (51.52%), Postives = 65/99 (65.66%), Query Frame = -2 Query: 1 NMQQQSSSNLPNEKNGAIPPVTKFQASKDAEQQRCTASSPSERTEKDGTRSTAEGKNTPSLLPTAPANLEGALKPRETDQRARVIRVVPHNPRSATESA 297 N+Q QSS N+P++K+GAIP FQAS D+E Q TA+SP + T + GT AEG + L P AP EG +P ++ Q R IRVVPHNPR+AT SA Sbjct: 512 NVQHQSSCNMPSQKSGAIPHAMMFQASNDSELQGSTANSPGD-TARLGTDQNAEGSDALQLFPMAPVIPEGVAQPHDSGQPTRAIRVVPHNPRTATASA 609 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013441 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0013441 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0013441 ID=g.arboreum_cottongen_reftransV1_0013441; Name=g.arboreum_cottongen_reftransV1_0013441; organism=Gossypium arboreum; type=contig; length=298bpback to top |