g.arboreum_cottongen_reftransV1_0013441, g.arboreum_cottongen_reftransV1_0013441 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0013441
Unique Nameg.arboreum_cottongen_reftransV1_0013441
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length298
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr1chromosomeg.arboreum_cottongen_reftransV1_0013441:1..298 .
Chr1:3022719..3023016 -
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0013441 vs. ExPASy TrEMBL
Match: A0A0D2QJN2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G024100 PE=4 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 3.500e-56
Identity = 95/99 (95.96%), Postives = 97/99 (97.98%), Query Frame = -2
Query:    1 NMQQQSSSNLPNEKNGAIPPVTKFQASKDAEQQRCTASSPSERTEKDGTRSTAEGKNTPSLLPTAPANLEGALKPRETDQRARVIRVVPHNPRSATESA 297
            NMQQQSSSNLPNEKNGAIPPVTK+QASKDAEQQRC ASSPSERTEKDGTRST+EGKNTPSLLPTAPANLEGALKPRETDQR RVIRVVPHNPRSATESA
Sbjct:  481 NMQQQSSSNLPNEKNGAIPPVTKYQASKDAEQQRCNASSPSERTEKDGTRSTSEGKNTPSLLPTAPANLEGALKPRETDQRTRVIRVVPHNPRSATESA 579          
BLAST of g.arboreum_cottongen_reftransV1_0013441 vs. ExPASy TrEMBL
Match: A0A0D2PKS9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G024100 PE=4 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.432e-55
Identity = 95/99 (95.96%), Postives = 97/99 (97.98%), Query Frame = -2
Query:    1 NMQQQSSSNLPNEKNGAIPPVTKFQASKDAEQQRCTASSPSERTEKDGTRSTAEGKNTPSLLPTAPANLEGALKPRETDQRARVIRVVPHNPRSATESA 297
            NMQQQSSSNLPNEKNGAIPPVTK+QASKDAEQQRC ASSPSERTEKDGTRST+EGKNTPSLLPTAPANLEGALKPRETDQR RVIRVVPHNPRSATESA
Sbjct:  591 NMQQQSSSNLPNEKNGAIPPVTKYQASKDAEQQRCNASSPSERTEKDGTRSTSEGKNTPSLLPTAPANLEGALKPRETDQRTRVIRVVPHNPRSATESA 689          
BLAST of g.arboreum_cottongen_reftransV1_0013441 vs. ExPASy TrEMBL
Match: A0A0D2N4P6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G024000 PE=4 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 7.602e-42
Identity = 81/99 (81.82%), Postives = 87/99 (87.88%), Query Frame = -2
Query:    1 NMQQQSSSNLPNEKNGAIPPVTKFQASKDAEQQRCTASSPSERTEKDGTRSTAEGKNTPSLLPTAPANLEGALKPRETDQRARVIRVVPHNPRSATESA 297
            NMQQQSSSNLP++KN AIPPV KFQASKD EQQRCTASSP ER EK+ T +TAEGKNTP +L TAPAN +GALKP ETDQR RVIRVVPHNPRSATESA
Sbjct:  593 NMQQQSSSNLPSKKNVAIPPVVKFQASKDTEQQRCTASSPGERAEKNRTCNTAEGKNTPLIL-TAPANPQGALKPNETDQRTRVIRVVPHNPRSATESA 690          
BLAST of g.arboreum_cottongen_reftransV1_0013441 vs. ExPASy TrEMBL
Match: A0A061GJX7_THECC (Hydroxyproline-rich glycoprotein family protein, putative OS=Theobroma cacao GN=TCM_037249 PE=4 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.317e-33
Identity = 68/99 (68.69%), Postives = 76/99 (76.77%), Query Frame = -2
Query:    1 NMQQQSSSNLPNEKNGAIPPVTKFQASKDAEQQRCTASSPSERTEKDGTRSTAEGKNTPSLLPTAPANLEGALKPRETDQRARVIRVVPHNPRSATESA 297
            NMQ Q+S NLP+EKNGAI  V KFQASKD E Q  TASSP ER ++DGTRS AEGKN   L  TAP  LEGA +P +++Q  RVIRVVPHNPRSATESA
Sbjct:  599 NMQHQNSCNLPSEKNGAISHVMKFQASKDTELQGSTASSPGERVQRDGTRSAAEGKNALPLFRTAPTILEGAPQPHDSEQTTRVIRVVPHNPRSATESA 697          
BLAST of g.arboreum_cottongen_reftransV1_0013441 vs. ExPASy TrEMBL
Match: A0A067KDC6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07703 PE=4 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.718e-28
Identity = 60/99 (60.61%), Postives = 73/99 (73.74%), Query Frame = -2
Query:    1 NMQQQSSSNLPNEKNGAIPPVTKFQASKDAEQQRCTASSPSERTEKDGTRSTAEGKNTPSLLPTAPANLEGALKPRETDQRARVIRVVPHNPRSATESA 297
            N+Q QSS NLPN+K+G++P V KF+ASKD E +  TASSP ER +  GT   AEG++   L P APA  EGA +P+ETD   RVI+VVPHNPRSATESA
Sbjct:  603 NVQHQSSCNLPNQKSGSVPQVPKFRASKDTELRGSTASSPGERVQGVGTVEAAEGRDALLLFPVAPATPEGASQPQETDMPTRVIKVVPHNPRSATESA 701          
BLAST of g.arboreum_cottongen_reftransV1_0013441 vs. ExPASy TrEMBL
Match: V4UIG2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007592mg PE=4 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.272e-23
Identity = 54/98 (55.10%), Postives = 65/98 (66.33%), Query Frame = -2
Query:    1 MQQQSSSNLPNEKNGAIPPVTKFQASKDAEQQRCTASSPSERTEKDGTRSTAEGKNTPSLLPTAPANLEGALKPRETDQRARVIRVVPHNPRSATESA 294
            M Q+SS N+P +KNGA+PPV +FQASKD E Q  TASSP ER   DG    AEG +   L   +P   E A +P + DQ  +VI+VVPHNPRSATES 
Sbjct:  609 MPQESSCNVPAQKNGAVPPVRQFQASKDTELQGSTASSPGERVRGDGMGHAAEGTDALQLSTVSPVVQEAAPQPHDADQPTKVIKVVPHNPRSATESV 706          
BLAST of g.arboreum_cottongen_reftransV1_0013441 vs. ExPASy TrEMBL
Match: A5BVL6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040198 PE=4 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.842e-23
Identity = 59/100 (59.00%), Postives = 68/100 (68.00%), Query Frame = -2
Query:    1 NMQQQSSSNLPNEKNGAIPPVTKFQASKDAEQQRCTASSPSERTEKDGTRSTAEGKNTPSLLPTAPANL-EGALKPRETDQRARVIRVVPHNPRSATESA 297
            NMQ Q+S N+P  K  AIP   KF  SKD+E Q  TASSPSER ++ GT  TAEG++   L P APA +  G  +P  TDQ  RVIRVVPHNPRSATESA
Sbjct: 1023 NMQHQNSCNVPTPKR-AIPQGVKFPMSKDSEFQGSTASSPSEREQQVGTGDTAEGRDPLPLFPMAPAAIPAGDPQPNGTDQPTRVIRVVPHNPRSATESA 1121          
BLAST of g.arboreum_cottongen_reftransV1_0013441 vs. ExPASy TrEMBL
Match: A0A067GK08_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004928mg PE=4 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.264e-23
Identity = 53/98 (54.08%), Postives = 65/98 (66.33%), Query Frame = -2
Query:    1 MQQQSSSNLPNEKNGAIPPVTKFQASKDAEQQRCTASSPSERTEKDGTRSTAEGKNTPSLLPTAPANLEGALKPRETDQRARVIRVVPHNPRSATESA 294
            M Q+SS N+P +KNGA+PPV +FQASKD E Q  TASSP ER   DG    AEG +   +   +P   E A +P + DQ  +VI+VVPHNPRSATES 
Sbjct:  609 MPQESSCNVPAQKNGAVPPVRQFQASKDTELQGSTASSPGERVRGDGMGHAAEGTDALQVSTVSPVVQEAAPQPHDADQPTKVIKVVPHNPRSATESV 706          
BLAST of g.arboreum_cottongen_reftransV1_0013441 vs. ExPASy TrEMBL
Match: F6H384_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g00660 PE=4 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.026e-21
Identity = 59/100 (59.00%), Postives = 68/100 (68.00%), Query Frame = -2
Query:    1 NMQQQSSSNLPNEKNGAIPPVTKFQASKDAEQQRCTASSPSERTEKDGTRSTAEGKNTPSLLPTAPANL-EGALKPRETDQRARVIRVVPHNPRSATESA 297
            NMQ Q+S N+P  K  AIP   KF  SKD+E Q  TASSPSER ++ GT  TAEG++   L P APA +  G  +P  TDQ  RVIRVVPHNPRSATESA
Sbjct:  610 NMQHQNSCNVPTPKR-AIPQGVKFPMSKDSEFQGSTASSPSEREQQVGTGDTAEGRDPLPLFPMAPAAIPAGDPQPNGTDQPTRVIRVVPHNPRSATESA 708          
BLAST of g.arboreum_cottongen_reftransV1_0013441 vs. ExPASy TrEMBL
Match: M5XAQ9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002858mg PE=4 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.893e-20
Identity = 51/99 (51.52%), Postives = 65/99 (65.66%), Query Frame = -2
Query:    1 NMQQQSSSNLPNEKNGAIPPVTKFQASKDAEQQRCTASSPSERTEKDGTRSTAEGKNTPSLLPTAPANLEGALKPRETDQRARVIRVVPHNPRSATESA 297
            N+Q QSS N+P++K+GAIP    FQAS D+E Q  TA+SP + T + GT   AEG +   L P AP   EG  +P ++ Q  R IRVVPHNPR+AT SA
Sbjct:  512 NVQHQSSCNMPSQKSGAIPHAMMFQASNDSELQGSTANSPGD-TARLGTDQNAEGSDALQLFPMAPVIPEGVAQPHDSGQPTRAIRVVPHNPRTATASA 609          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013441 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2QJN2_GOSRA3.500e-5695.96Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2PKS9_GOSRA1.432e-5595.96Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2N4P6_GOSRA7.602e-4281.82Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061GJX7_THECC3.317e-3368.69Hydroxyproline-rich glycoprotein family protein, p... [more]
A0A067KDC6_JATCU6.718e-2860.61Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
V4UIG2_9ROSI2.272e-2355.10Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A5BVL6_VITVI2.842e-2359.00Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A067GK08_CITSI7.264e-2354.08Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
F6H384_VITVI1.026e-2159.00Putative uncharacterized protein OS=Vitis vinifera... [more]
M5XAQ9_PRUPE1.893e-2051.52Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0013441 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34281FAMILY NOT NAMEDcoord: 4..98

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0013441 ID=g.arboreum_cottongen_reftransV1_0013441; Name=g.arboreum_cottongen_reftransV1_0013441; organism=Gossypium arboreum; type=contig; length=298bp
CGCCGATTCAGTGGCTGACCTTGGATTATGAGGCACAACTCGTATCACTC
TCGCCCTCTGGTCAGTTTCGCGAGGCTTCAAGGCTCCCTCCAGATTGGCT
GGAGCTGTAGGCAGAAGTGAAGGTGTATTTTTCCCTTCAGCGGTGCTACG
GGTCCCATCTTTCTCTGTTCTCTCACTGGGACTGCTTGCAGTACATCGTT
GTTGCTCAGCATCTTTAGATGCTTGAAACTTCGTGACAGGAGGAATAGCA
CCATTCTTCTCGTTCGGCAGATTAGATGAACTTTGTTGCTGCATGTTG
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