g.arboreum_cottongen_reftransV1_0020198, g.arboreum_cottongen_reftransV1_0020198 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0020198
Unique Nameg.arboreum_cottongen_reftransV1_0020198
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length724
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr4chromosomeg.arboreum_cottongen_reftransV1_0020198:1..724 .
Chr4:30048118..30049299 -
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: A0A0B0P482_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_10584 PE=4 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 2.421e-110
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1
Query:    1 VVLASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGISDQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDXXXXXXXXXXXXXDYDEEGSSSRFRLFNL 519
            VVLASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGISDQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDSSEESVGSKSNSSDYDEEGSSSRFRLFNL
Sbjct:  322 VVLASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGISDQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDSSEESVGSKSNSSDYDEEGSSSRFRLFNL 494          
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: A0A0D2SR45_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G256200 PE=4 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 3.814e-107
Identity = 168/173 (97.11%), Postives = 170/173 (98.27%), Query Frame = 1
Query:    1 VVLASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGISDQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDXXXXXXXXXXXXXDYDEEGSSSRFRLFNL 519
            VV+ +SSAICSLITSTRRNTHMNQPRSWDEGPWV RSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGI DQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDSSEESVGSKSNSSDYDEEGSSSRFRLFNL
Sbjct:  321 VVVLASSAICSLITSTRRNTHMNQPRSWDEGPWVQRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGICDQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDSSEESVGSKSNSSDYDEEGSSSRFRLFNL 493          
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: A0A0D2PET2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G256200 PE=4 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 8.404e-97
Identity = 139/144 (96.53%), Postives = 141/144 (97.92%), Query Frame = 1
Query:    1 VVLASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGISDQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCD 432
            VV+ +SSAICSLITSTRRNTHMNQPRSWDEGPWV RSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGI DQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCD
Sbjct:  321 VVVLASSAICSLITSTRRNTHMNQPRSWDEGPWVQRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGICDQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCD 464          
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: A0A061EZG4_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_025845 PE=4 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.215e-62
Identity = 117/181 (64.64%), Postives = 139/181 (76.80%), Query Frame = 1
Query:    1 VVLASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGISD---------QNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDXXXXXXXXXXXXXDYDEEGSSSRFRLFN 516
            V +AS SAIC LITS +RN HM+QPRS    PW+H+SR G I  GRAEFF RSPRM  NR +WN  +P TS  W+  P +G +S          Q+YYS+FHKTR RKKFTKQEW+DF+RESTRHA+A LAA+PEFTDWM EHA RIKLLPCDSS+ESVGSK++S+D D EGS+SRFRLF+
Sbjct:  324 VAVASCSAICYLITSAKRNDHMHQPRSGYGSPWLHQSRQGTIKHGRAEFFSRSPRMDSNRKVWN--SPKTSPVWSNSPVKGVVSSPLGEAAIDHQDYYSTFHKTRYRKKFTKQEWEDFSRESTRHALAQLAASPEFTDWMTEHAGRIKLLPCDSSDESVGSKTSSTDEDNEGSNSRFRLFS 502          
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: A0A061F7K8_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_025845 PE=4 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 1.216e-62
Identity = 117/181 (64.64%), Postives = 139/181 (76.80%), Query Frame = 1
Query:    1 VVLASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGISD---------QNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDXXXXXXXXXXXXXDYDEEGSSSRFRLFN 516
            V +AS SAIC LITS +RN HM+QPRS    PW+H+SR G I  GRAEFF RSPRM  NR +WN  +P TS  W+  P +G +S          Q+YYS+FHKTR RKKFTKQEW+DF+RESTRHA+A LAA+PEFTDWM EHA RIKLLPCDSS+ESVGSK++S+D D EGS+SRFRLF+
Sbjct:  323 VAVASCSAICYLITSAKRNDHMHQPRSGYGSPWLHQSRQGTIKHGRAEFFSRSPRMDSNRKVWN--SPKTSPVWSNSPVKGVVSSPLGEAAIDHQDYYSTFHKTRYRKKFTKQEWEDFSRESTRHALAQLAASPEFTDWMTEHAGRIKLLPCDSSDESVGSKTSSTDEDNEGSNSRFRLFS 501          
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: A0A0D2VG08_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G195700 PE=4 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.715e-43
Identity = 84/152 (55.26%), Postives = 105/152 (69.08%), Query Frame = 1
Query:    1 VVLASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKF--------PARGGISDQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCD 432
            V LAS SAICSLITS  R  +M  P S D+ PW+H+SR      GRAEF  RSPR+   + +W+  +P T+  W           P  G I  Q+YYS+FHKT ++KKFT+QEW+DF++ESTR A+A+LAA+PEFTDWMIEHADRIKLLP D
Sbjct:  356 VALASCSAICSLITSKIRKGYMQPPYSGDQSPWLHQSRQRTPMLGRAEFLSRSPRVDSKQKMWS--SPKTAPAWTNSLVKGYYAKPGEGAIDHQDYYSTFHKTNHQKKFTEQEWEDFSQESTRKAMAELAASPEFTDWMIEHADRIKLLPRD 505          
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: A0A0B0NYJ1_GOSAR (Putative guanosine-3',5'-bis (Diphosphate) 3'-pyrophosphohydrolase OS=Gossypium arboreum GN=F383_23394 PE=4 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 8.909e-42
Identity = 83/152 (54.61%), Postives = 104/152 (68.42%), Query Frame = 1
Query:    1 VVLASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARG--------GISDQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCD 432
            V LAS SAICSLITS  R  +M    S D+ PW+H SR   +  GRAEF  RSPR+  N+ + N  +P T+  W     +G         I  Q+YYS+FHKT ++KKFT+QEW+DF++ESTR A+A+LAA+PEFTDWMIEHADRIKLLP D
Sbjct:  324 VALASCSAICSLITSKIRKGYMQPQYSRDQSPWLHHSRQRTLMPGRAEFLSRSPRVDSNQKMQN--SPKTAPEWTNSLVKGYYAKLGEGAIDHQDYYSTFHKTNHQKKFTEQEWEDFSQESTRQAMAELAASPEFTDWMIEHADRIKLLPRD 473          
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: A0A0D2MVV5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G099300 PE=4 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.066e-40
Identity = 76/152 (50.00%), Postives = 99/152 (65.13%), Query Frame = 1
Query:    1 VVLASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARG--------GISDQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCD 432
            + LAS S ICS+ITS  R  +M    S D+ PW+H+SR   +  G AEF  +SPR+     +WN  +P T+  W     +G         I  Q+YYS+FHKT  +KKFT+QEW+DF++ESTR A+ +LAA+ EFTDWMIEHADRIKLLP D
Sbjct:    1 MALASCSTICSIITSKTRKGYMQPLYSGDQSPWLHQSRQRTLMPGCAEFVSQSPRVDSKEKMWN--SPETAPAWTNSLVKGYYAKLGEGAIDHQDYYSTFHKTNLQKKFTEQEWEDFSQESTRKAMVELAASSEFTDWMIEHADRIKLLPRD 150          
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: A0A0D2P988_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G099300 PE=4 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.581e-40
Identity = 76/152 (50.00%), Postives = 99/152 (65.13%), Query Frame = 1
Query:    1 VVLASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARG--------GISDQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCD 432
            + LAS S ICS+ITS  R  +M    S D+ PW+H+SR   +  G AEF  +SPR+     +WN  +P T+  W     +G         I  Q+YYS+FHKT  +KKFT+QEW+DF++ESTR A+ +LAA+ EFTDWMIEHADRIKLLP D
Sbjct:   29 MALASCSTICSIITSKTRKGYMQPLYSGDQSPWLHQSRQRTLMPGCAEFVSQSPRVDSKEKMWN--SPETAPAWTNSLVKGYYAKLGEGAIDHQDYYSTFHKTNLQKKFTEQEWEDFSQESTRKAMVELAASSEFTDWMIEHADRIKLLPRD 178          
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: A0A067FRI2_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0112002mg PE=4 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.723e-31
Identity = 82/182 (45.05%), Postives = 111/182 (60.99%), Query Frame = 1
Query:    7 LASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLT---WNKFPARGGIS---------DQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDXXXXXXXXXXXXXDYDEEGSSSRFRLFN 516
            L S   +CSLITS +          W    W+  S       GRAEF  RSP +     LW+  TP ++ +   W+  P RG +S          ++YYS+FH T  RK+FT+QEW+D TR+STR A+A+LAA+PEF DW+IEHADRIKLLP +SSEE++GS+S+S+D ++  S S FR F 
Sbjct:   66 LISCCIVCSLITSPK----------W-VASWLQCSSQTTNKHGRAEFLSRSPVVGSRGKLWS--TPKSTKSPPLWSNSPVRGVVSPYSGERVINQRDYYSTFHDTGKRKRFTEQEWEDLTRDSTRQAVAELAASPEFADWIIEHADRIKLLPSESSEEALGSESDSTDENDAASCSGFRFFG 234          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0P482_GOSAR2.421e-110100.00Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0D2SR45_GOSRA3.814e-10797.11Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2PET2_GOSRA8.404e-9796.53Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061EZG4_THECC1.215e-6264.64Uncharacterized protein isoform 2 OS=Theobroma cac... [more]
A0A061F7K8_THECC1.216e-6264.64Uncharacterized protein isoform 1 OS=Theobroma cac... [more]
A0A0D2VG08_GOSRA1.715e-4355.26Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0NYJ1_GOSAR8.909e-4254.61Putative guanosine-3',5'-bis (Diphosphate) 3'-pyro... [more]
A0A0D2MVV5_GOSRA4.066e-4050.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2P988_GOSRA4.581e-4050.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A067FRI2_CITSI2.723e-3145.05Uncharacterized protein (Fragment) OS=Citrus sinen... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31587FAMILY NOT NAMEDcoord: 1..170
NoneNo IPR availablePANTHERPTHR31587:SF3F1K23.6coord: 1..170

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0020198 ID=g.arboreum_cottongen_reftransV1_0020198; Name=g.arboreum_cottongen_reftransV1_0020198; organism=Gossypium arboreum; type=contig; length=724bp
GTGGTATTGGCTTCTTCTTCTGCTATCTGTTCTCTCATCACATCAACTAG
AAGGAATACTCACATGAACCAACCACGGTCTTGGGACGAGGGTCCTTGGG
TGCACCGGTCAAGGCCGGGAATAATAAACCAAGGCCGTGCTGAATTTTTT
GATAGGTCTCCAAGAATGTATCCTAATAGGACATTGTGGAATGGACATAC
TCCACTGACTTCACTAACATGGAATAAATTTCCTGCAAGAGGCGGCATAA
GTGATCAAAATTACTATTCTAGCTTTCACAAGACACGTAACCGAAAGAAA
TTTACGAAACAAGAATGGAAAGATTTCACTCGCGAGTCTACCCGGCACGC
CATTGCAGATTTGGCGGCAACCCCAGAGTTCACTGATTGGATGATTGAAC
ATGCTGACAGGATTAAACTCCTTCCGTGTGATAGTTCAGAAGAATCAGTT
GGAAGCAAATCAAATTCGTCCGATTATGATGAAGAAGGAAGCTCCAGCCG
ATTTAGATTATTTAACTTGTAGCCTCCTATACGAAAATGGTTATCTTTGA
AAATTTAGCCCCAGATATAGGAATCATGTTACTCAAATTCAAGTGTGAAT
GTTGGATACAGATATTTGTTGTCGGAGAGTCAGGTCCTGATAATTAAGTC
CAGATATGCGTTGAACACAGATAATTGAAGAGTCGGAGTAATTCCAGATA
ACATGTTTATTTTACAAGTAAATT
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