g.arboreum_cottongen_reftransV1_0020198, g.arboreum_cottongen_reftransV1_0020198 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: A0A0B0P482_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_10584 PE=4 SV=1) HSP 1 Score: 338.191 bits (866), Expect = 2.421e-110 Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1 Query: 1 VVLASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGISDQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDXXXXXXXXXXXXXDYDEEGSSSRFRLFNL 519 VVLASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGISDQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDSSEESVGSKSNSSDYDEEGSSSRFRLFNL Sbjct: 322 VVLASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGISDQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDSSEESVGSKSNSSDYDEEGSSSRFRLFNL 494
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: A0A0D2SR45_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G256200 PE=4 SV=1) HSP 1 Score: 330.102 bits (845), Expect = 3.814e-107 Identity = 168/173 (97.11%), Postives = 170/173 (98.27%), Query Frame = 1 Query: 1 VVLASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGISDQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDXXXXXXXXXXXXXDYDEEGSSSRFRLFNL 519 VV+ +SSAICSLITSTRRNTHMNQPRSWDEGPWV RSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGI DQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDSSEESVGSKSNSSDYDEEGSSSRFRLFNL Sbjct: 321 VVVLASSAICSLITSTRRNTHMNQPRSWDEGPWVQRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGICDQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDSSEESVGSKSNSSDYDEEGSSSRFRLFNL 493
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: A0A0D2PET2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G256200 PE=4 SV=1) HSP 1 Score: 303.138 bits (775), Expect = 8.404e-97 Identity = 139/144 (96.53%), Postives = 141/144 (97.92%), Query Frame = 1 Query: 1 VVLASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGISDQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCD 432 VV+ +SSAICSLITSTRRNTHMNQPRSWDEGPWV RSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGI DQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCD Sbjct: 321 VVVLASSAICSLITSTRRNTHMNQPRSWDEGPWVQRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGICDQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCD 464
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: A0A061EZG4_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_025845 PE=4 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 1.215e-62 Identity = 117/181 (64.64%), Postives = 139/181 (76.80%), Query Frame = 1 Query: 1 VVLASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGISD---------QNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDXXXXXXXXXXXXXDYDEEGSSSRFRLFN 516 V +AS SAIC LITS +RN HM+QPRS PW+H+SR G I GRAEFF RSPRM NR +WN +P TS W+ P +G +S Q+YYS+FHKTR RKKFTKQEW+DF+RESTRHA+A LAA+PEFTDWM EHA RIKLLPCDSS+ESVGSK++S+D D EGS+SRFRLF+ Sbjct: 324 VAVASCSAICYLITSAKRNDHMHQPRSGYGSPWLHQSRQGTIKHGRAEFFSRSPRMDSNRKVWN--SPKTSPVWSNSPVKGVVSSPLGEAAIDHQDYYSTFHKTRYRKKFTKQEWEDFSRESTRHALAQLAASPEFTDWMTEHAGRIKLLPCDSSDESVGSKTSSTDEDNEGSNSRFRLFS 502
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: A0A061F7K8_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_025845 PE=4 SV=1) HSP 1 Score: 214.927 bits (546), Expect = 1.216e-62 Identity = 117/181 (64.64%), Postives = 139/181 (76.80%), Query Frame = 1 Query: 1 VVLASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARGGISD---------QNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDXXXXXXXXXXXXXDYDEEGSSSRFRLFN 516 V +AS SAIC LITS +RN HM+QPRS PW+H+SR G I GRAEFF RSPRM NR +WN +P TS W+ P +G +S Q+YYS+FHKTR RKKFTKQEW+DF+RESTRHA+A LAA+PEFTDWM EHA RIKLLPCDSS+ESVGSK++S+D D EGS+SRFRLF+ Sbjct: 323 VAVASCSAICYLITSAKRNDHMHQPRSGYGSPWLHQSRQGTIKHGRAEFFSRSPRMDSNRKVWN--SPKTSPVWSNSPVKGVVSSPLGEAAIDHQDYYSTFHKTRYRKKFTKQEWEDFSRESTRHALAQLAASPEFTDWMTEHAGRIKLLPCDSSDESVGSKTSSTDEDNEGSNSRFRLFS 501
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: A0A0D2VG08_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G195700 PE=4 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 1.715e-43 Identity = 84/152 (55.26%), Postives = 105/152 (69.08%), Query Frame = 1 Query: 1 VVLASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKF--------PARGGISDQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCD 432 V LAS SAICSLITS R +M P S D+ PW+H+SR GRAEF RSPR+ + +W+ +P T+ W P G I Q+YYS+FHKT ++KKFT+QEW+DF++ESTR A+A+LAA+PEFTDWMIEHADRIKLLP D Sbjct: 356 VALASCSAICSLITSKIRKGYMQPPYSGDQSPWLHQSRQRTPMLGRAEFLSRSPRVDSKQKMWS--SPKTAPAWTNSLVKGYYAKPGEGAIDHQDYYSTFHKTNHQKKFTEQEWEDFSQESTRKAMAELAASPEFTDWMIEHADRIKLLPRD 505
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: A0A0B0NYJ1_GOSAR (Putative guanosine-3',5'-bis (Diphosphate) 3'-pyrophosphohydrolase OS=Gossypium arboreum GN=F383_23394 PE=4 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 8.909e-42 Identity = 83/152 (54.61%), Postives = 104/152 (68.42%), Query Frame = 1 Query: 1 VVLASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARG--------GISDQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCD 432 V LAS SAICSLITS R +M S D+ PW+H SR + GRAEF RSPR+ N+ + N +P T+ W +G I Q+YYS+FHKT ++KKFT+QEW+DF++ESTR A+A+LAA+PEFTDWMIEHADRIKLLP D Sbjct: 324 VALASCSAICSLITSKIRKGYMQPQYSRDQSPWLHHSRQRTLMPGRAEFLSRSPRVDSNQKMQN--SPKTAPEWTNSLVKGYYAKLGEGAIDHQDYYSTFHKTNHQKKFTEQEWEDFSQESTRQAMAELAASPEFTDWMIEHADRIKLLPRD 473
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: A0A0D2MVV5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G099300 PE=4 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 4.066e-40 Identity = 76/152 (50.00%), Postives = 99/152 (65.13%), Query Frame = 1 Query: 1 VVLASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARG--------GISDQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCD 432 + LAS S ICS+ITS R +M S D+ PW+H+SR + G AEF +SPR+ +WN +P T+ W +G I Q+YYS+FHKT +KKFT+QEW+DF++ESTR A+ +LAA+ EFTDWMIEHADRIKLLP D Sbjct: 1 MALASCSTICSIITSKTRKGYMQPLYSGDQSPWLHQSRQRTLMPGCAEFVSQSPRVDSKEKMWN--SPETAPAWTNSLVKGYYAKLGEGAIDHQDYYSTFHKTNLQKKFTEQEWEDFSQESTRKAMVELAASSEFTDWMIEHADRIKLLPRD 150
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: A0A0D2P988_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G099300 PE=4 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 4.581e-40 Identity = 76/152 (50.00%), Postives = 99/152 (65.13%), Query Frame = 1 Query: 1 VVLASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLTWNKFPARG--------GISDQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCD 432 + LAS S ICS+ITS R +M S D+ PW+H+SR + G AEF +SPR+ +WN +P T+ W +G I Q+YYS+FHKT +KKFT+QEW+DF++ESTR A+ +LAA+ EFTDWMIEHADRIKLLP D Sbjct: 29 MALASCSTICSIITSKTRKGYMQPLYSGDQSPWLHQSRQRTLMPGCAEFVSQSPRVDSKEKMWN--SPETAPAWTNSLVKGYYAKLGEGAIDHQDYYSTFHKTNLQKKFTEQEWEDFSQESTRKAMVELAASSEFTDWMIEHADRIKLLPRD 178
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Match: A0A067FRI2_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0112002mg PE=4 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.723e-31 Identity = 82/182 (45.05%), Postives = 111/182 (60.99%), Query Frame = 1 Query: 7 LASSSAICSLITSTRRNTHMNQPRSWDEGPWVHRSRPGIINQGRAEFFDRSPRMYPNRTLWNGHTPLTSLT---WNKFPARGGIS---------DQNYYSSFHKTRNRKKFTKQEWKDFTRESTRHAIADLAATPEFTDWMIEHADRIKLLPCDXXXXXXXXXXXXXDYDEEGSSSRFRLFN 516 L S +CSLITS + W W+ S GRAEF RSP + LW+ TP ++ + W+ P RG +S ++YYS+FH T RK+FT+QEW+D TR+STR A+A+LAA+PEF DW+IEHADRIKLLP +SSEE++GS+S+S+D ++ S S FR F Sbjct: 66 LISCCIVCSLITSPK----------W-VASWLQCSSQTTNKHGRAEFLSRSPVVGSRGKLWS--TPKSTKSPPLWSNSPVRGVVSPYSGERVINQRDYYSTFHDTGKRKRFTEQEWEDLTRDSTRQAVAELAASPEFADWIIEHADRIKLLPSESSEEALGSESDSTDENDAASCSGFRFFG 234 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0020198 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0020198 ID=g.arboreum_cottongen_reftransV1_0020198; Name=g.arboreum_cottongen_reftransV1_0020198; organism=Gossypium arboreum; type=contig; length=724bpback to top |