g.arboreum_cottongen_reftransV1_0002348, g.arboreum_cottongen_reftransV1_0002348 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0002348
Unique Nameg.arboreum_cottongen_reftransV1_0002348
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1055
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr11chromosomeg.arboreum_cottongen_reftransV1_0002348:1..1054 .
Chr11:26940035..26943174 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: A0A0B0NN27_GOSAR (Deneddylase ORF24 OS=Gossypium arboreum GN=F383_19254 PE=4 SV=1)

HSP 1 Score: 518.079 bits (1333), Expect = 4.335e-177
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 3
Query:    3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRSPSSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPIQ 821
            EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVISSIIASGILLITISSISLFSFPYLGRGGKYLGKSRSPSSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPIQ
Sbjct:  349 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVISSIIASGILLITISSISLFSFPYLGRGGKYLGKSRSPSSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPIQ 621          
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: A0A0D2R8J0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G157000 PE=4 SV=1)

HSP 1 Score: 502.286 bits (1292), Expect = 6.846e-171
Identity = 264/273 (96.70%), Postives = 269/273 (98.53%), Query Frame = 3
Query:    3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRSPSSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPIQ 821
            EGWRESN SRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVISSIIASGILLITIS+ISLFSFPYLGRGGKYLGKSRSPSSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADV+K+DADIKSSVQDIA YQVVLSTEGKIVGFQPTSRVGVN WA+NPLTKELYGGKKLSPGLIEPRL+IQLPN IVVLELLMSVNPDSCFALARPIQ
Sbjct:  348 EGWRESNESRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVISSIIASGILLITISTISLFSFPYLGRGGKYLGKSRSPSSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVKKIDADIKSSVQDIASYQVVLSTEGKIVGFQPTSRVGVNHWAVNPLTKELYGGKKLSPGLIEPRLKIQLPNEIVVLELLMSVNPDSCFALARPIQ 620          
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: A0A061GM10_THECC (F1K23.23, putative isoform 1 OS=Theobroma cacao GN=TCM_029783 PE=4 SV=1)

HSP 1 Score: 406.757 bits (1044), Expect = 1.370e-133
Identity = 212/274 (77.37%), Postives = 247/274 (90.15%), Query Frame = 3
Query:    3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRSP-SSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPIQ 821
            EGW +S+ +RW+VLLTHSQMVGLADILD+YYEDVY+LP KQL  G+VANYNSL+KAKR+SSF +++S+ +ASGILLITIS++S FSFP+L +GGKY G SRSP SSIIESTTIQSV AEKLE FC+LVIQKIKDAFGWPG+IATET++ AWIGE+P+ LK PHQANS++ED+S S ADV K+D DIKSSVQD+A YQV+LSTEGKIVGFQPTSRVGVN WA+NPL KELYGG+KLSPGLIE  L+I+LPN IVV+ELLMSVNPDSCFALARPIQ
Sbjct:  351 EGWIKSDENRWEVLLTHSQMVGLADILDLYYEDVYSLPNKQLRCGVVANYNSLSKAKRSSSFSRMVSATVASGILLITISTLSQFSFPHLHKGGKYPGGSRSPPSSIIESTTIQSVHAEKLEAFCILVIQKIKDAFGWPGDIATETDLSAWIGEMPNYLKVPHQANSSNEDDSASSADVGKIDDDIKSSVQDVASYQVILSTEGKIVGFQPTSRVGVNHWAVNPLAKELYGGRKLSPGLIERGLKIRLPNEIVVIELLMSVNPDSCFALARPIQ 624          
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: V4U9P2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10014636mg PE=4 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 9.994e-108
Identity = 177/274 (64.60%), Postives = 218/274 (79.56%), Query Frame = 3
Query:    3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRS-PSSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPIQ 821
            EGWR+S  +RW++LLTHSQMVGLADILDMYYED+++LP KQL  G+V NY +L   KR+SSFLK++S  +ASGI L+ IS++   S P+L +G K+ G+ RS  SS I +   Q VDA KLE  CV ++++IKD F WPG+I TE +IGAWIG+IP+ LK  H+ +S SE N T  A +EK+D DIKSS+QDIA YQVVLSTEGKIVGFQPTSRVGVN WA +PL KE+YGG+KLSPGLIEP L+I LPN +V++ELLMSVNPDSCFALARPIQ
Sbjct:  340 EGWRKSAENRWEILLTHSQMVGLADILDMYYEDIFSLPNKQLSCGVVTNYTNLPSKKRDSSFLKILSVTLASGIFLVAISALGQRSSPHLHKGEKFSGELRSLASSEIWNALRQPVDAVKLEEMCVSIVKRIKDTFDWPGDIMTEMSIGAWIGKIPNYLKLSHEDDSTSEGNLT--AALEKIDPDIKSSMQDIASYQVVLSTEGKIVGFQPTSRVGVNHWAASPLAKEMYGGRKLSPGLIEPSLKIHLPNEVVLIELLMSVNPDSCFALARPIQ 611          
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: A0A067GR11_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007246mg PE=4 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 1.010e-107
Identity = 178/274 (64.96%), Postives = 217/274 (79.20%), Query Frame = 3
Query:    3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRS-PSSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPIQ 821
            EGWR+S  +RW++LLTHSQMVGLADILDMYYED+++LP KQL   +V NY +L   KR+SSFLK++S  +ASGI L+ IS++   S P+L +G K+ G+ RS  SS I +   Q VDA KLE  CV +I++IKD F WPG+I TE +IGAWIGEIP+ LK  H+ +S SE N T  A +EK+D DIKSS+QDIA YQVVLSTEGKIVGFQPTSRVGVN WA +PL KE+YGG+KLSPGLIEP L+I LPN +V++ELLMSVNPDSCFALARPIQ
Sbjct:  340 EGWRKSAENRWEILLTHSQMVGLADILDMYYEDIFSLPNKQLSCSVVTNYTNLPSKKRDSSFLKILSVTLASGIFLVAISALGQRSSPHLHKGEKFSGELRSLASSEIWNALRQPVDAVKLEEMCVSIIKRIKDTFDWPGDIMTEMSIGAWIGEIPNYLKLSHEDDSTSEGNLT--AALEKIDPDIKSSMQDIASYQVVLSTEGKIVGFQPTSRVGVNHWAASPLAKEMYGGRKLSPGLIEPSLKIHLPNEVVLIELLMSVNPDSCFALARPIQ 611          
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: B9H2N7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s05040g PE=4 SV=2)

HSP 1 Score: 326.635 bits (836), Expect = 2.281e-102
Identity = 162/274 (59.12%), Postives = 219/274 (79.93%), Query Frame = 3
Query:    3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRS-PSSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPIQ 821
            EGWRES+G+RW+VLLTHSQMVGLA+I DMYYED+YT+PK++L  G+V+N+ +LT+ KR+SS + V+S  + SGI L++IS++S F  P+L +G  Y  ++ S PSS I+    +S+DA KL+ FC+L+ +K+KD+FGWPG+I T+  IGAWIGEIP+  K+  +A++ SE+NST    ++K+DAD+KSS QDIA YQVVLST+GKIVGFQPTS VGVN WA NPL KELYGG+ LSPG IEP L+I  PN ++++ELL+SVN D+ FALARP++
Sbjct:  358 EGWRESSGNRWEVLLTHSQMVGLAEIFDMYYEDIYTMPKEELSCGVVSNFTNLTRKKRSSSLMNVLSVTLVSGIFLVSISALSQFCLPHLRKGRMYAQENSSLPSSEIQFAVNESLDAAKLQEFCILICKKMKDSFGWPGDIVTDKKIGAWIGEIPAYFKSMDEADAASEENSTDSTPIQKIDADLKSSAQDIASYQVVLSTDGKIVGFQPTSGVGVNHWAANPLAKELYGGRNLSPGFIEPGLKIHFPNEVILIELLVSVNSDANFALARPVR 631          
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: M5WTF7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003266mg PE=4 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 3.420e-97
Identity = 163/274 (59.49%), Postives = 206/274 (75.18%), Query Frame = 3
Query:    3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRS-PSSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPIQ 821
            EGWR+S  +  +V LTHSQMVGLADI+DMYYED+YT+P KQL  G+VAN  +L+  K  S  L+++S  +ASGI LITIS++    FPY  +G KYL + RS PSS ++    QSVDA KLE FCV +++KIKDA GWPGEI  ET++GAW G++P+ L+   + +SN ED ST  +  EK+D D+K+S QDIA YQVVLST+GKIVGFQP S V VN WA NPL KELY G+KLSPGL EP L++Q PN + V+ELLMSV PD+CFALARP++
Sbjct:  315 EGWRKSAENWCEVFLTHSQMVGLADIIDMYYEDLYTMPDKQLSCGVVANSTNLSNKKMGSFLLRMLSVTLASGIFLITISALGQLGFPYPHKGAKYLREDRSFPSSEVDGALYQSVDAVKLEAFCVSLVKKIKDALGWPGEIKMETDVGAWTGKVPNYLRMVVEDSSNREDMSTFSSSSEKIDEDLKASAQDIASYQVVLSTDGKIVGFQPLSSVAVNHWAANPLAKELYRGRKLSPGLTEPGLKVQRPNEVAVIELLMSVKPDACFALARPVR 588          
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: A0A067JE38_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21499 PE=4 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 1.469e-91
Identity = 159/272 (58.46%), Postives = 200/272 (73.53%), Query Frame = 3
Query:    3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRSP-SSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARP 815
            EGWR S  +RW+VLLTHSQM GLA+ LDMYYED+Y+LP K+L       + + +  K  SS LK++S  +A+GI L+ IS++    FP L +G  Y  +  SP SS IE    +S+D EKL+ FCVLV++KIKD  GWPG++ TE N GAWIGE+P  LK   +++SN E+NSTS A  EK+D DIKS+ QDIA YQVVLST+GKI+GFQPTSR+GVN WA NPL KELYGG+KLSPG+ EP  +I+LP  IVV+ELLMS N D+CF LARP
Sbjct:  556 EGWRRSADNRWEVLLTHSQMAGLAETLDMYYEDIYSLPDKELSCHSTTKFTNFSSKKVRSSLLKILSVGLATGIFLVAISALGHIFFPLLRKGEIYTQQLGSPPSSEIEYAINESLDNEKLQEFCVLVVKKIKDGCGWPGDVITEENNGAWIGEVPKYLKMMDKSDSNIEENSTS-ASSEKIDEDIKSAAQDIASYQVVLSTDGKIIGFQPTSRIGVNHWASNPLAKELYGGRKLSPGIFEPGHKIRLPKEIVVIELLMSANFDACFVLARP 826          

HSP 2 Score: 78.5666 bits (192), Expect = 1.110e-12
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 3
Query:    3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFL 191
            EGWR S  +RW+VLLTHSQM GLA+ LDMYYED+Y+LP K+L       + + +  K  +SF 
Sbjct:  355 EGWRRSADNRWEVLLTHSQMAGLAETLDMYYEDIYSLPDKELSCHSTTKFTNFSSKKVPASFF 417          
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: B9S938_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1012200 PE=4 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 2.462e-91
Identity = 159/264 (60.23%), Postives = 204/264 (77.27%), Query Frame = 3
Query:    3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRSP-SSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPD 791
            EGWR    +RW+VLLTHSQM GLA+ILDMY+EDVY+LP K+L     AN+ +L   K++SS+LK +S  + SGI LI IS+ S F FP+L +   Y  + RSP SS IE +  +S+ AEKL+ FC+L+++KIKDAFGWPG+I TET+ GAWIGEIP+ LKA  + +S+ ED+STS   +EK+D D+KSS QDIA YQVVLST+GKIVGFQPTSR+GVN WA NPL +ELY G+KLSPGL+EP L+I+ P+ IVV+ELLMS+  D
Sbjct:  340 EGWRRFGDNRWEVLLTHSQMAGLAEILDMYFEDVYSLPHKELSCRATANFTNLANTKKSSSWLKFLSVSLISGIFLIAISAFSRFYFPHLHKQQTYNQEHRSPPSSEIEHSVNESLHAEKLQEFCILIVKKIKDAFGWPGDIITETSNGAWIGEIPNYLKAMGEYDSSKEDSSTS-DPIEKLDEDMKSSAQDIASYQVVLSTDGKIVGFQPTSRIGVNHWAANPLARELYAGRKLSPGLVEPGLKIRPPSEIVVIELLMSLWAD 602          
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: F6HM53_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g00520 PE=4 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.632e-85
Identity = 153/277 (55.23%), Postives = 196/277 (70.76%), Query Frame = 3
Query:    3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGM-VANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRSPS---SIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPIQ 821
            EGW+ S  +RW+VLLTHSQMV LA+ILDMYYED+YTLP KQL  G   AN+ +L+K KR SS LK+++  IASGI L+ I+ +    FP +   GK  G    PS   S I      S++  K+E FC+ +++KIKDAFGW GEI  E+++GAW G++P  L+   +AN + ED S   A +++ D + K+S QDIA YQVVLS +G IVGFQPTSRV VN WA+NPL KELY GKKLSPGL E  L+I  PN +V++ELLMSVN D+CFALARP+Q
Sbjct:  351 EGWKRSAENRWEVLLTHSQMVALANILDMYYEDLYTLPDKQLLCGAGFANFTNLSKNKRISSLLKILTISIASGIFLVAINVLGRLYFPRVNEVGK--GPGNQPSLLPSEINCVQHNSLETTKMEAFCISIVKKIKDAFGWSGEIMAESSVGAWTGDLPIYLRV-DKANHSGEDISNGTALLQRSDEEKKTSTQDIASYQVVLSVDGDIVGFQPTSRVAVNNWAVNPLAKELYKGKKLSPGLFETGLKIPRPNEVVIIELLMSVNSDACFALARPVQ 624          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0NN27_GOSAR4.335e-177100.00Deneddylase ORF24 OS=Gossypium arboreum GN=F383_19... [more]
A0A0D2R8J0_GOSRA6.846e-17196.70Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061GM10_THECC1.370e-13377.37F1K23.23, putative isoform 1 OS=Theobroma cacao GN... [more]
V4U9P2_9ROSI9.994e-10864.60Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A067GR11_CITSI1.010e-10764.96Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
B9H2N7_POPTR2.281e-10259.12Uncharacterized protein OS=Populus trichocarpa GN=... [more]
M5WTF7_PRUPE3.420e-9759.49Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A067JE38_JATCU1.469e-9158.46Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
B9S938_RICCO2.462e-9160.23Putative uncharacterized protein OS=Ricinus commun... [more]
F6HM53_VITVI1.632e-8555.23Putative uncharacterized protein OS=Vitis vinifera... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35694:SF1SUBFAMILY NOT NAMEDcoord: 1..259
NoneNo IPR availablePANTHERPTHR35694FAMILY NOT NAMEDcoord: 1..259
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..50
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 78..259
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 51..77
NoneNo IPR availableTMHMMTMhelixcoord: 51..73

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0002348 ID=g.arboreum_cottongen_reftransV1_0002348; Name=g.arboreum_cottongen_reftransV1_0002348; organism=Gossypium arboreum; type=contig; length=1055bp
TTGAAGGATGGAGAGAATCTAACGGGAGTAGGTGGCAAGTTCTTTTGACA
CACTCCCAAATGGTTGGATTGGCTGATATATTAGATATGTACTATGAAGA
TGTTTACACACTGCCCAAGAAACAACTACACAGTGGCATGGTTGCCAATT
ACAACAGCTTGACCAAAGCAAAGAGGAACTCTTCTTTCTTGAAAGTAATA
TCTTCCATCATTGCAAGTGGAATTCTTCTCATTACCATCAGTAGTATCAG
TCTATTTAGTTTTCCTTATCTAGGCAGAGGAGGGAAGTACCTTGGAAAAT
CTCGGTCTCCATCATCAATTATTGAGTCTACAACAATTCAATCTGTAGAT
GCTGAAAAGTTGGAGACATTTTGTGTACTGGTAATCCAAAAGATTAAGGA
TGCTTTTGGCTGGCCTGGTGAAATAGCAACAGAAACCAATATTGGTGCCT
GGATTGGTGAAATACCAAGCTGTCTAAAAGCACCTCATCAAGCTAATTCT
AATAGTGAGGACAATTCAACTAGTTTTGCTGATGTGGAGAAAATGGATGC
TGATATAAAATCATCTGTCCAGGATATTGCTGGTTATCAGGTGGTTTTAT
CAACTGAAGGAAAAATAGTTGGGTTCCAACCTACAAGTCGGGTGGGTGTC
AATCAGTGGGCTTTGAATCCCTTAACAAAAGAGCTATATGGTGGGAAAAA
ACTTTCCCCTGGTTTAATTGAACCTCGTCTCGAAATCCAACTTCCTAATG
GGATTGTTGTACTTGAGCTGTTGATGTCAGTTAACCCAGATTCCTGCTTT
GCATTGGCTAGGCCAATCCAATGATCATTGCTTGGTTTGATTTTAAAGAG
TTAATTGTAATAAAGTCAATGGCATCAATAATCCAGGTCCTTTTCTTTTC
CTTTCATTTTTTTTATTAGCTATTTTGGTTGAAGTTGGAAAACGTGTAAA
GGTACATCTCCAATGAGATTTCATTGGGTGCAGTCTCATTCATATACGTT
TATAATATGTAGAATGTTCTAGCCTTTAGCCATGTTTACAAATGTATGAG
AATGA
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