g.arboreum_cottongen_reftransV1_0006317, g.arboreum_cottongen_reftransV1_0006317 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0006317
Unique Nameg.arboreum_cottongen_reftransV1_0006317
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length640
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr8chromosomeg.arboreum_cottongen_reftransV1_0006317:2..640 .
Chr8:3576915..3577553 +		n/a
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006317 vs. ExPASy TrEMBL
Match: A0A0D2SP37_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_010G074100 PE=4 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.807e-52
Identity = 119/125 (95.20%), Postives = 121/125 (96.80%), Query Frame = -3 
Query:  264 ETMIGDLEKMLAVGLIWGATNAAMRRGALLWDRYLKSSPNSGDPPRKFYQKXXXXXXXXXXXXLFWQYSIPFFINLSASATFFAILGQAPISLXXXXXXXXXXXXXXXXAILLGEETRIGHTLLG 638
            ETMIGD+EKMLAVGLIWGATNAAMRRGALLWDRYLKS+PNSGDPPRKF QKLLNSLSNWLTLLLFWQYSIPFFINLSASATFFAILGQAPISLAVPVTNATTFAATAV  ILLGEETRIGH LLG
Sbjct:   32 ETMIGDVEKMLAVGLIWGATNAAMRRGALLWDRYLKSTPNSGDPPRKFDQKLLNSLSNWLTLLLFWQYSIPFFINLSASATFFAILGQAPISLAVPVTNATTFAATAVFGILLGEETRIGHALLG 156
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006317 vs. ExPASy TrEMBL
Match: A0A0D2U7Y5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G074100 PE=4 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 4.849e-51
Identity = 118/128 (92.19%), Postives = 121/128 (94.53%), Query Frame = -3 
Query:  249 MIGDLEKMLAVGLIWGATNAAMRRGALLWDRYLKSSPNSGDPPRKFYQKXXXXXXXXXXXXLFWQYSIPFFINLSASATFFAILGQAPISLXXXXXXXXXXXXXXXXAILLGEETRIGHTLLGTGFIV 632
            MIGD+EKMLAVGLIWGATNAAMRRGALLWDRYLKS+PNSGDPPRKF QKLLNSLSNWLTLLLFWQYSIPFFINLSASATFFAILGQAPISLAVPVTNATTFAATAV  ILLGEETRIGH LL  G +V
Sbjct:    1 MIGDVEKMLAVGLIWGATNAAMRRGALLWDRYLKSTPNSGDPPRKFDQKLLNSLSNWLTLLLFWQYSIPFFINLSASATFFAILGQAPISLAVPVTNATTFAATAVFGILLGEETRIGHALLVYGVVV 128
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006317 vs. ExPASy TrEMBL
Match: A0A0B0PAQ6_GOSAR (Transmembrane protein OS=Gossypium arboreum GN=F383_09445 PE=4 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.317e-49
Identity = 117/122 (95.90%), Postives = 118/122 (96.72%), Query Frame = -3 
Query:  246 MLAVGLIWGATNAAMRRGALLWDRYLKSSPNSGDPPRKFYQKXXXXXXXXXXXXLFWQYSIPFFINLSASATFFAILGQAPISLXXXXXXXXXXXXXXXXAILLGEETRIGHTLLGTGFIVL 611
            MLAVGLIWGATNAAMRRGALLWDRYLKSSPNSGDPPRKFYQKLLNSLSNWLTLLLFWQYSIPFFINLSASATFFAILGQAPISLAVPVTNATTFAATAVSAILLGEETRIGHTLL  G  +L
Sbjct:    1 MLAVGLIWGATNAAMRRGALLWDRYLKSSPNSGDPPRKFYQKLLNSLSNWLTLLLFWQYSIPFFINLSASATFFAILGQAPISLAVPVTNATTFAATAVSAILLGEETRIGHTLLDEGLFIL 122
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006317 vs. ExPASy TrEMBL
Match: A0A061GMI4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_037830 PE=4 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.353e-49
Identity = 114/136 (83.82%), Postives = 121/136 (88.97%), Query Frame = -3 
Query:  225 MIGDLEKMLAVGLIWGATNAAMRRGALLWDRYLKSSPNSGDPPRKFYQKXXXXXXXXXXXXLFWQYSIPFFINLSASATFFAILGQAPISLXXXXXXXXXXXXXXXXAILLGEETRIGHTLLGTGFIVLGVSLCIT 632
            MIG +EKMLAVGLIWGATNAAMRRGALLWD+ LKS+P   DPP K +QKLL+SLSNWLTLL FWQYS+PF INLSASATFF IL QAPISLAVPVTNATTFAATAV  ILLGEETR+GH LLGTGFIVLGV LCIT
Sbjct:    1 MIGGVEKMLAVGLIWGATNAAMRRGALLWDQSLKSTPPPRDPPHKLHQKLLDSLSNWLTLLFFWQYSLPFLINLSASATFFTILSQAPISLAVPVTNATTFAATAVFGILLGEETRVGHALLGTGFIVLGVWLCIT 136
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006317 vs. ExPASy TrEMBL
Match: D7TBJ5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g03470 PE=4 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.344e-37
Identity = 96/135 (71.11%), Postives = 109/135 (80.74%), Query Frame = -3 
Query:  228 MIGDLEKMLAVGLIWGATNAAMRRGALLWDRYLKSSPNSGDPPRKFYQKXXXXXXXXXXXXLFWQYSIPFFINLSASATFFAILGQAPISLXXXXXXXXXXXXXXXXAILLGEETRIGHTLLGTGFIVLGVSLCI 632
            MIGD+EKM+AVGL+WG+TNA MRRGAL+WDR ++SS      P   +Q+LL +  NWL LLL WQYSIPF INLSASATFFAIL   PISLAVPVTNATTFAATAVSA+LLGEETR+   LLGT  IVLGV +CI
Sbjct:    1 MIGDIEKMIAVGLVWGSTNAIMRRGALIWDRKVRSSSAQTTKPSTLHQRLLATYKNWLNLLLTWQYSIPFLINLSASATFFAILSDTPISLAVPVTNATTFAATAVSAMLLGEETRVWLALLGTFLIVLGVWICI 135
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006317 vs. ExPASy TrEMBL
Match: W9SL38_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003658 PE=4 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.825e-35
Identity = 91/137 (66.42%), Postives = 108/137 (78.83%), Query Frame = -3 
Query:  225 IGDLEKMLAVGLIWGATNAAMRRGALLWDRYLKSSPNSG--DPPRKFYQKXXXXXXXXXXXXLFWQYSIPFFINLSASATFFAILGQAPISLXXXXXXXXXXXXXXXXAILLGEETRIGHTLLGTGFIVLGVSLCIT 629
            +GD EKM+AVGL+WGATNA MRRGA+LWDR L+ SP+S   DP R    ++ +S++ WL LL  WQY+IPF INLSASATFFAILG  PIS AVPVTNATTFAATAV  +LLGE T +G+  +GT  IVLGVSLCI+
Sbjct:    5 VGDTEKMIAVGLVWGATNALMRRGAVLWDRALRLSPSSSRPDPTRGPMGRIASSINKWLKLLWIWQYTIPFLINLSASATFFAILGHVPISRAVPVTNATTFAATAVFGVLLGERTHLGYAFVGTLLIVLGVSLCIS 141
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006317 vs. ExPASy TrEMBL
Match: Q94AU5_ARATH (Putative uncharacterized protein At5g19570 OS=Arabidopsis thaliana GN=At5g19570 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.912e-35
Identity = 90/136 (66.18%), Postives = 107/136 (78.68%), Query Frame = -3 
Query:  228 MIGDLEKMLAVGLIWGATNAAMRRGALLWDRYLKSSPN-SGDPPRKFYQKXXXXXXXXXXXXLFWQYSIPFFINLSASATFFAILGQAPISLXXXXXXXXXXXXXXXXAILLGEETRIGHTLLGTGFIVLGVSLCI 632
            M  D++KM+AVGL+WGATNA +RRGAL WD+   SS   S  PP +  +K++ +L +W+ LLLFWQYSIPF INLSASATFFA+L  APISLAVPVTNATTFAATA   ILLGEET+IG  LLGT FIV G+ LC+
Sbjct:    1 MKEDMDKMVAVGLVWGATNALIRRGALAWDKTKSSSTTESHSPPLQIRRKIMIALRDWINLLLFWQYSIPFLINLSASATFFALLSHAPISLAVPVTNATTFAATAAFGILLGEETQIGLALLGTSFIVFGIWLCV 136
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006317 vs. ExPASy TrEMBL
Match: V4WDB9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009852mg PE=4 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 4.186e-34
Identity = 89/136 (65.44%), Postives = 103/136 (75.74%), Query Frame = -3 
Query:  225 MIGDLEKMLAVGLIWGATNAAMRRGALLWDRYLKSSPNSGDPPRKFYQKXXXXXXXXXXXXLFWQYSIPFFINLSASATFFAILGQAPISLXXXXXXXXXXXXXXXXAILLGEETRIGHTLLGTGFIVLGVSLCIT 632
            M GD+EKM+AVGL+WGATNA MRRGALLWD+ ++          K +QKL  SL NWL LL+ WQY++PF +NLSASATFFAIL   PISLAVPVTNATTFAATA   +LLGE TR+G +LLG   IVLGV LCI 
Sbjct:    1 MNGDVEKMIAVGLVWGATNALMRRGALLWDQSVRRLSTPSSSSLKLHQKLFASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCIN 136
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006317 vs. ExPASy TrEMBL
Match: M5VRJ9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013135mg PE=4 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.250e-33
Identity = 93/138 (67.39%), Postives = 108/138 (78.26%), Query Frame = -3 
Query:  225 MIGDLEKMLAVGLIWGATNAAMRRGALLWDRYLK--SSPNSGDPPRKFYQKXXXXXXXXXXXXLFWQYSIPFFINLSASATFFAILGQAPISLXXXXXXXXXXXXXXXXAILLGEETRIGHTLLGTGFIVLGVSLCIT 632
            MIGD+EKM+AVGL+WGATNA MRRGALLWD+ LK  SS  +   P + + KLL S+ +WL LL  WQY++PFF+NLSASATFFAIL   PISLAVPVTNATTFAATAV   LLGE+T +G  L GT  IVLG+ LCIT
Sbjct:    1 MIGDVEKMIAVGLVWGATNALMRRGALLWDQALKSSSSAQAQAQPGRIHHKLLTSIKSWLKLLSIWQYTVPFFVNLSASATFFAILSHTPISLAVPVTNATTFAATAVFGWLLGEQTHLGLALFGTALIVLGIWLCIT 138
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006317 vs. ExPASy TrEMBL
Match: D7LZ95_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_488851 PE=4 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.275e-32
Identity = 88/137 (64.23%), Postives = 106/137 (77.37%), Query Frame = -3 
Query:  228 MIGDLEKMLAVGLIWGATNAAMRRGALLWDRYLKS--SPNSGDPPRKFYQKXXXXXXXXXXXXLFWQYSIPFFINLSASATFFAILGQAPISLXXXXXXXXXXXXXXXXAILLGEETRIGHTLLGTGFIVLGVSLCI 632
            M  D+EKM+AVGL+WGATNA +RRGAL WD    S  + +   PP +  +K++ +L +W+ LLLFWQYSIPF INLSASATFFA+L  APIS+AVPVTNATTFAATA   ILLGEET+IG  LLGT FIV G+ LC+
Sbjct:    1 MKEDMEKMVAVGLLWGATNALIRRGALAWDNRKSSLTTESPPPPPLQIRRKIMIALRDWINLLLFWQYSIPFLINLSASATFFALLSHAPISIAVPVTNATTFAATAAFGILLGEETQIGLALLGTSFIVFGIWLCV 137
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006317 vs. ExPASy Swiss-Prot
Match: TM234_DICDI (Transmembrane protein 234 homolog OS=Dictyostelium discoideum GN=DDB_G0277575 PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 4.971e-7
Identity = 44/136 (32.35%), Postives = 67/136 (49.26%), Query Frame = -3 
Query:  225 DLEKMLAVGLIWGATNAAMRRGALLWDRYLKSSPNSGDPPRKFYQKXXXXXXXXXXXXLFW---QYSIPFFINLSASATFFAILGQAPISLXXXXXXXXXXXXXXXXAILLGEETRIGHTLLGTGFIVLGVSLCIT 623
            ++  +L VG IWG TN  ++RG+             G    K   K           +  W    Y+IP  INLS S  FF  L +  ISL VP++N+ TF  T++  +LLGE+     + LG  F++ GV++C++
Sbjct:    5 NIISLLLVGFIWGGTNPLIKRGS------------EGVSKVK---KDNFLSQIIYEFVYLWTRPSYTIPMLINLSGSVVFFYTLSKVDISLVVPISNSLTFLFTSLMGMLLGEKVLHFKSYLGMIFVLAGVTICVS 125
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006317 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2SP37_GOSRA2.807e-5295.20Uncharacterized protein (Fragment) OS=Gossypium ra... [more]
A0A0D2U7Y5_GOSRA4.849e-5192.19Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0PAQ6_GOSAR1.317e-4995.90Transmembrane protein OS=Gossypium arboreum GN=F38... [more]
A0A061GMI4_THECC2.353e-4983.82Uncharacterized protein OS=Theobroma cacao GN=TCM_... [more]
D7TBJ5_VITVI2.344e-3771.11Putative uncharacterized protein OS=Vitis vinifera... [more]
W9SL38_9ROSA2.825e-3566.42Uncharacterized protein OS=Morus notabilis GN=L484... [more]
Q94AU5_ARATH9.912e-3566.18Putative uncharacterized protein At5g19570 OS=Arab... [more]
V4WDB9_9ROSI4.186e-3465.44Uncharacterized protein OS=Citrus clementina GN=CI... [more]
M5VRJ9_PRUPE1.250e-3367.39Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
D7LZ95_ARALL1.275e-3264.23Putative uncharacterized protein OS=Arabidopsis ly... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0006317 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TM234_DICDI4.971e-732.35Transmembrane protein 234 homolog OS=Dictyostelium... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018908Putative transmembrane family 234PFAMPF10639TMEM234coord: 8..135
e-value: 1.6E-25
score: 89.2
NoneNo IPR availablePANTHERPTHR28668:SF1TRANSMEMBRANE PROTEIN 234coord: 1..136
NoneNo IPR availablePANTHERPTHR28668FAMILY NOT NAMEDcoord: 1..136
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 91..111
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 136..136
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 85..90
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 117..135
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 112..116
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 63..84
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..62
NoneNo IPR availableTMHMMTMhelixcoord: 116..135
NoneNo IPR availableTMHMMTMhelixcoord: 89..111
NoneNo IPR availableTMHMMTMhelixcoord: 62..84

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0006317 ID=g.arboreum_cottongen_reftransV1_0006317; Name=g.arboreum_cottongen_reftransV1_0006317; organism=Gossypium arboreum; type=contig; length=640bp
TTTGAATAAAACTATTCCCAATAGGATTATTGCACATGAAAGCAAAATTG
TATCCATATACAGTTATAATTTAATTTTCAGTATTCTCATTTGCTTTAGC
ATCCAAATGAAAATTTGAGCTCTAGATTTTGCTTCAAAAAGGAAAGGTAA
AATAAATAATGACTTCTAGTGTTCAACCAAATGCAATACCAGAATAGGCC
TAAAAGAAAAGCACATGCAGATCACGTGATACAAAGCGAAACACCCAAAA
CAATAAAACCCGTACCCAACAGAGTATGACCGATCCGGGTCTCCTCACCC
AATAGGATTGCAGAAACGGCGGTGGCAGCAAACGTGGTCGCGTTGGTGAC
GGGGACGGCGAGCGAAATCGGAGCCTGGCCTAAGATAGCGAAAAAGGTGG
CGGAGGCGGAGAGGTTGATGAAGAAAGGGATCGAATATTGCCAAAACAAA
AGGAGGGTTAGCCAATTGGATAAGGAATTGAGGAGCTTTTGGTAGAACTT
GCGAGGTGGGTCGCCTGAGTTTGGAGAGGACTTGAGATATCGGTCCCAAA
GGAGTGCGCCACGGCGCATTGCGGCGTTAGTGGCGCCCCAGATCAGGCCT
ACCGCCAACATTTTCTCTAAGTCTCCGATCATTGTTTCTG
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR018908TMEM234