g.arboreum_cottongen_reftransV1_0009137, g.arboreum_cottongen_reftransV1_0009137 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0009137
Unique Name	g.arboreum_cottongen_reftransV1_0009137
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	413

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A0D2N8G3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G117500 PE=4 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.891e-86
Identity = 129/137 (94.16%), Postives = 132/137 (96.35%), Query Frame = 2

Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412
            NSEISPSQFEAHAGW SRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFH+ECISLPRIP GTWHCRYCQNTFQ EKFV+ NANALAAGRVAGIDPIEQITKR IRII+TPE
Sbjct:  531 NSEISPSQFEAHAGWASRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHIECISLPRIPTGTWHCRYCQNTFQNEKFVQHNANALAAGRVAGIDPIEQITKRCIRIIRTPE 667

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A061GWZ8_THECC (Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain, putative OS=Theobroma cacao GN=TCM_041570 PE=4 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.231e-80
Identity = 123/137 (89.78%), Postives = 127/137 (92.70%), Query Frame = 2

Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412
            NSEISPSQFEAHAGW +RRKPFQ+IYTSNGVSLHELSISL K RKFST ENDDLCSICLDGGNLLCCDTCPRAFH +C+SLP IP GTWHCRYCQN FQKEKFVERN NALAAGRVAGIDPIEQITKR IRIIKTPE
Sbjct:  550 NSEISPSQFEAHAGWATRRKPFQHIYTSNGVSLHELSISLLKTRKFSTNENDDLCSICLDGGNLLCCDTCPRAFHKDCVSLPNIPTGTWHCRYCQNNFQKEKFVERNVNALAAGRVAGIDPIEQITKRCIRIIKTPE 686

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A0D2RTH4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G104200 PE=4 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 7.396e-79
Identity = 121/137 (88.32%), Postives = 128/137 (93.43%), Query Frame = 2

Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412
            NSEISPSQFEAHAGW SRRKPFQ+IYTSNGVSLHELSISL KN+K+ST + DDLCSICL GG+L CC+TCPRAFH EC+SLP IP GTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE
Sbjct:  514 NSEISPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSISLLKNQKYSTNDCDDLCSICLQGGDLFCCNTCPRAFHKECVSLPSIPTGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 650

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A0D2Q749_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G104200 PE=4 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 7.459e-79
Identity = 121/137 (88.32%), Postives = 128/137 (93.43%), Query Frame = 2

Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412
            NSEISPSQFEAHAGW SRRKPFQ+IYTSNGVSLHELSISL KN+K+ST + DDLCSICL GG+L CC+TCPRAFH EC+SLP IP GTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE
Sbjct:  514 NSEISPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSISLLKNQKYSTNDCDDLCSICLQGGDLFCCNTCPRAFHKECVSLPSIPTGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 650

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A067L655_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05418 PE=4 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 3.124e-71
Identity = 106/135 (78.52%), Postives = 124/135 (91.85%), Query Frame = 2

Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKT 406
            N+E+SPSQFE+HAGW SRRKP+ +IYTSNGVSLHEL++SLSKNRKFST+ENDDLC IC DGGNLLCCDTCPR++H EC+SLP IP G W+C++C N FQKEKFVERNANA+AAGRVAG+DPIEQIT+R IRI+KT
Sbjct:  908 NAEVSPSQFESHAGWASRRKPYLHIYTSNGVSLHELALSLSKNRKFSTHENDDLCQICKDGGNLLCCDTCPRSYHKECLSLPEIPKGKWNCKFCFNNFQKEKFVERNANAIAAGRVAGVDPIEQITRRCIRIVKT 1042

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A067FA06_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001383mg PE=4 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 8.448e-71
Identity = 104/137 (75.91%), Postives = 119/137 (86.86%), Query Frame = 2

Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412
            NSE+SPSQFEAHAGW SRRKPFQ+IYTSNGVSLHELSI LS  R FS+ ENDDLC IC+DGG+LLCCD+CPRAFH++C+SLP IP GTWHCRYC NTFQKEKFVE NANA AAGR+ G+DP  Q+  R IRI++TP+
Sbjct:  666 NSEVSPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSIKLSLERPFSSKENDDLCGICMDGGDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTFQKEKFVEYNANARAAGRIEGVDPFAQMVSRCIRIVQTPD 802

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A067EYY8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001383mg PE=4 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 9.371e-71
Identity = 104/137 (75.91%), Postives = 119/137 (86.86%), Query Frame = 2

Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412
            NSE+SPSQFEAHAGW SRRKPFQ+IYTSNGVSLHELSI LS  R FS+ ENDDLC IC+DGG+LLCCD+CPRAFH++C+SLP IP GTWHCRYC NTFQKEKFVE NANA AAGR+ G+DP  Q+  R IRI++TP+
Sbjct:  665 NSEVSPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSIKLSLERPFSSKENDDLCGICMDGGDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTFQKEKFVEYNANARAAGRIEGVDPFAQMVSRCIRIVQTPD 801

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A067FAT4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001383mg PE=4 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 9.469e-71
Identity = 104/137 (75.91%), Postives = 119/137 (86.86%), Query Frame = 2

Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412
            NSE+SPSQFEAHAGW SRRKPFQ+IYTSNGVSLHELSI LS  R FS+ ENDDLC IC+DGG+LLCCD+CPRAFH++C+SLP IP GTWHCRYC NTFQKEKFVE NANA AAGR+ G+DP  Q+  R IRI++TP+
Sbjct:  665 NSEVSPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSIKLSLERPFSSKENDDLCGICMDGGDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTFQKEKFVEYNANARAAGRIEGVDPFAQMVSRCIRIVQTPD 801

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: V4UEE6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030297mg PE=4 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 9.622e-71
Identity = 104/137 (75.91%), Postives = 119/137 (86.86%), Query Frame = 2

Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412
            NSE+SPSQFEAHAGW SRRKPFQ+IYTSNGVSLHELSI LS  R FS+ ENDDLC IC+DGG+LLCCD+CPRAFH++C+SLP IP GTWHCRYC NTFQKEKFVE NANA AAGR+ G+DP  Q+  R IRI++TP+
Sbjct:  636 NSEVSPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSIKLSLERPFSSKENDDLCGICMDGGDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTFQKEKFVEYNANARAAGRIEGVDPFAQMVSRCIRIVQTPD 772

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: U5GH02_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s22720g PE=4 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.216e-70
Identity = 108/137 (78.83%), Postives = 120/137 (87.59%), Query Frame = 2

Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412
            NSE+SPSQFEAHAGW SRRKP+ NIYTSNGVSLHEL+ISLSK R+ S  ENDDLC IC DGG LLCCD CPRAFH EC+SLP IP G W+C+YC NTF+KEKFVERNANA+AAGRVAG+DPIEQIT+R IRI+KT E
Sbjct:  549 NSEVSPSQFEAHAGWASRRKPYLNIYTSNGVSLHELAISLSKGRRHSIKENDDLCQICRDGGKLLCCDVCPRAFHQECLSLPSIPRGKWYCKYCLNTFEKEKFVERNANAIAAGRVAGVDPIEQITRRCIRIVKTFE 685

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: AIRE_HUMAN (Autoimmune regulator OS=Homo sapiens GN=AIRE PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.017e-13
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 2

Query:  149 ENDDLCSICLDGGNLLCCDTCPRAFHLECISLP--RIPIGTWHCRYC-QNTFQK 301
            +N+D C++C DGG L+CCD CPRAFHL C+S P   IP GTW C  C Q T Q+
Sbjct:  294 KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 347

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: IDM1_ARATH (Increased DNA methylation 1 OS=Arabidopsis thaliana GN=IDM1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.866e-12
Identity = 37/106 (34.91%), Postives = 53/106 (50.00%), Query Frame = 2

Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNG-----VSLHELSISLSKNRKFSTYE-------NDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYC 283
            N  +S S+F+ HAG+ ++  P  N++  +G       L   S      R     E       NDD C +C DGG L+CCD CP  FH  C+S+  +P G+W+C  C
Sbjct:  664 NKTVSLSEFKNHAGF-NQNCPCLNLFMGSGKPFASCQLEAWSAEYKARRNGWRLEKASDDDPNDDSCGVCGDGGELICCDNCPSTFHQACLSMQVLPEGSWYCSSC 768

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: AIRE_MOUSE (Autoimmune regulator OS=Mus musculus GN=Aire PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.570e-12
Identity = 31/60 (51.67%), Postives = 37/60 (61.67%), Query Frame = 2

Query:  149 ENDDLCSICLDGGNLLCCDTCPRAFHLECISLP--RIPIGTWHCRYC------QNTFQKE 304
            +N+D C++C DGG L+CCD CPRAFHL C+S P   IP G W C  C      QN  Q E
Sbjct:  296 KNEDECAVCHDGGELICCDGCPRAFHLACLSPPLQEIPSGLWRCSCCLQGRVQQNLSQPE 355

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: TRI66_HUMAN (Tripartite motif-containing protein 66 OS=Homo sapiens GN=TRIM66 PE=2 SV=4)

HSP 1 Score: 64.6994 bits (156), Expect = 3.712e-11
Identity = 27/54 (50.00%), Postives = 35/54 (64.81%), Query Frame = 2

Query:  149 ENDDLCSICLDGGNLLCCDTCPRAFHLEC--ISLPRIPIGTWHCRYCQNTFQKE 304
            EN+D C++CL+GG LLCCD CP+ FHL C   +L   P G W C  C++  Q E
Sbjct:  968 ENEDFCAVCLNGGELLCCDRCPKVFHLSCHVPALLSFPGGEWVCTLCRSLTQPE 1021

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: RCO1_YEAST (Transcriptional regulatory protein RCO1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RCO1 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 3.925e-11
Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 2

Query:  125 KNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLP----RIPIGTWHCRYCQ 286
            KN     +EN+D CS C   G+ LCCDTCP++FH  C+  P     +P G WHC  C+
Sbjct:  250 KNNSTIDFENEDFCSACNQSGSFLCCDTCPKSFHFLCLDPPIDPNNLPKGDWHCNECK 307

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: CHD4_HUMAN (Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 1.154e-10
Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 2

Query:  149 ENDD----LCSICLDGGNLLCCDTCPRAFHLECIS--LPRIPIGTWHCRYC 283
            E DD     C +C DGG LLCCDTCP ++H+ C++  LP IP G W C  C
Sbjct:  443 EEDDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRC 493

HSP 2 Score: 58.151 bits (139), Expect = 4.892e-9
Identity = 22/51 (43.14%), Postives = 32/51 (62.75%), Query Frame = 2

Query:  146 YEND--DLCSICLDGGNLLCCDTCPRAFHLECI--SLPRIPIGTWHCRYCQ 286
            YE D  D C +C  GG ++ CDTCPRA+H+ C+   + + P G W C +C+
Sbjct:  365 YETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCE 415

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: CHD4_MOUSE (Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.154e-10
Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 2

Query:  149 ENDD----LCSICLDGGNLLCCDTCPRAFHLECIS--LPRIPIGTWHCRYC 283
            E DD     C +C DGG LLCCDTCP ++H+ C++  LP IP G W C  C
Sbjct:  436 EEDDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRC 486

HSP 2 Score: 60.077 bits (144), Expect = 1.081e-9
Identity = 28/80 (35.00%), Postives = 42/80 (52.50%), Query Frame = 2

Query:  146 YEND--DLCSICLDGGNLLCCDTCPRAFHLECI--SLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQ 373
            YE D  D C +C  GG ++ CDTCPRA+H+ C+   + + P G W C +C+    + +  E N+         G DP E+
Sbjct:  358 YETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGIQWEAKEDNSEGEEILEEVGGDPEEE 437

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: CHD3_DROME (Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3)

HSP 1 Score: 62.7734 bits (151), Expect = 1.451e-10
Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 2

Query:  128 NRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLP--RIPIGTWHCRYC 283
            N K   + +++ C +C DGG+LLCCD+CP  +H  C+S P   IP G W C  C
Sbjct:   26 NAKKQKFRDEEYCKVCSDGGDLLCCDSCPSVYHRTCLSPPLKSIPKGDWICPRC 79

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: TRI66_MOUSE (Tripartite motif-containing protein 66 OS=Mus musculus GN=Trim66 PE=1 SV=3)

HSP 1 Score: 62.3882 bits (150), Expect = 1.717e-10
Identity = 26/63 (41.27%), Postives = 38/63 (60.32%), Query Frame = 2

Query:  122 SKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLEC--ISLPRIPIGTWHCRYCQNTFQKE 304
            +K    +  EN+D C++C++GG LLCCD CP+ +HL C   +L   P G W C  C++  Q E
Sbjct:  985 AKKNTPAPIENEDFCAVCINGGELLCCDRCPKVYHLSCHVPALLSFPGGEWVCTLCRSLTQPE 1047

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: TRI33_XENLA (E3 ubiquitin-protein ligase TRIM33 OS=Xenopus laevis GN=trim33 PE=1 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.832e-10
Identity = 28/79 (35.44%), Postives = 47/79 (59.49%), Query Frame = 2

Query:  152 NDDLCSICLDGGNLLCCDTCPRAFHLEC--ISLPRIPIGTWHCRYCQ--NTFQKEKFVERNANALAAGRVAGIDPIEQI 376
            N+D C++C +GG+LLCC+ CP+ FHL C   +L   P G W C +C+  N  + E   + + ++     V G+ P++Q+
Sbjct:  849 NEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGEWICTFCRDLNKPEVEYDCDNSQHSKKGKTVQGLSPVDQM 927

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2N8G3_GOSRA	1.891e-86	94.16	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061GWZ8_THECC	1.231e-80	89.78	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type...	[more]
A0A0D2RTH4_GOSRA	7.396e-79	88.32	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2Q749_GOSRA	7.459e-79	88.32	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A067L655_JATCU	3.124e-71	78.52	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
A0A067FA06_CITSI	8.448e-71	75.91	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
A0A067EYY8_CITSI	9.371e-71	75.91	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
A0A067FAT4_CITSI	9.469e-71	75.91	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
V4UEE6_9ROSI	9.622e-71	75.91	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
U5GH02_POPTR	1.216e-70	78.83	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
AIRE_HUMAN	3.017e-13	57.41	Autoimmune regulator OS=Homo sapiens GN=AIRE PE=1 ...	[more]
IDM1_ARATH	1.866e-12	34.91	Increased DNA methylation 1 OS=Arabidopsis thalian...	[more]
AIRE_MOUSE	8.570e-12	51.67	Autoimmune regulator OS=Mus musculus GN=Aire PE=1 ...	[more]
TRI66_HUMAN	3.712e-11	50.00	Tripartite motif-containing protein 66 OS=Homo sap...	[more]
RCO1_YEAST	3.925e-11	44.83	Transcriptional regulatory protein RCO1 OS=Sacchar...	[more]
CHD4_HUMAN	1.154e-10	50.98	Chromodomain-helicase-DNA-binding protein 4 OS=Hom...	[more]
CHD4_MOUSE	1.154e-10	50.98	Chromodomain-helicase-DNA-binding protein 4 OS=Mus...	[more]
CHD3_DROME	1.451e-10	44.44	Chromodomain-helicase-DNA-binding protein 3 OS=Dro...	[more]
TRI66_MOUSE	1.717e-10	41.27	Tripartite motif-containing protein 66 OS=Mus musc...	[more]
TRI33_XENLA	1.832e-10	35.44	E3 ubiquitin-protein ligase TRIM33 OS=Xenopus laev...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001965	Zinc finger, PHD-type	SMART	SM00249	PHD_3	coord: 19..60 e-value: 3.2E-10 score: 50.0
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 6..67 e-value: 2.5E-18 score: 64.9
IPR019787	Zinc finger, PHD-finger	PFAM	PF00628	PHD	coord: 20..61 e-value: 2.1E-8 score: 33.8
IPR019787	Zinc finger, PHD-finger	PROSITE	PS50016	ZF_PHD_2	coord: 17..62 score: 10.033
None	No IPR available	PANTHER	PTHR24098:SF5	ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN	coord: 1..67
None	No IPR available	PANTHER	PTHR24098	FAMILY NOT NAMED	coord: 1..67
IPR019786	Zinc finger, PHD-type, conserved site	PROSITE	PS01359	ZF_PHD_1	coord: 20..59
IPR011011	Zinc finger, FYVE/PHD-type	SUPERFAMILY	57903	FYVE/PHD zinc finger	coord: 8..65

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0009137 ID=g.arboreum_cottongen_reftransV1_0009137; Name=g.arboreum_cottongen_reftransV1_0009137; organism=Gossypium arboreum; type=contig; length=413bp
TAATTCAGAGATAAGCCCCTCACAGTTTGAAGCTCATGCTGGTTGGCCAA
GTCGTCGCAAGCCTTTTCAAAACATTTACACATCAAATGGGGTATCTCTT
CATGAATTGTCAATATCCCTGTCGAAAAATCGGAAGTTCTCTACATATGA
GAATGATGACCTATGCAGCATCTGTTTGGATGGAGGGAATCTATTGTGTT
GTGACACATGTCCAAGGGCTTTTCACTTAGAGTGTATATCTCTTCCACGC
ATTCCAATTGGTACTTGGCACTGTAGATATTGCCAGAATACCTTCCAAAA
GGAAAAGTTTGTGGAACGTAATGCCAATGCTCTAGCTGCTGGAAGAGTTG
CGGGAATTGATCCAATAGAACAGATAACAAAGAGATCCATTCGAATCATC
AAAACTCCTGAGA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR001965	Znf_PHD
IPR013083	Znf_RING/FYVE/PHD
IPR019787	Znf_PHD-finger
IPR019786	Zinc_finger_PHD-type_CS
IPR011011	Znf_FYVE_PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

Search form

g.arboreum_cottongen_reftransV1_0009137, g.arboreum_cottongen_reftransV1_0009137 (contig) Gossypium arboreum

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