g.arboreum_cottongen_reftransV1_0015566, g.arboreum_cottongen_reftransV1_0015566 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0015566
Unique Name	g.arboreum_cottongen_reftransV1_0015566
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	445

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr3	chromosome	g.arboreum_cottongen_reftransV1_0015566:1..445 . Chr3:100488603..100489283 -		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0015566 vs. ExPASy TrEMBL
Match: A0A0D2R2V9_GOSRA (E3 ubiquitin-protein ligase OS=Gossypium raimondii GN=B456_004G114600 PE=3 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 7.393e-107
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1

Query:    1 CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSIR 444
            CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSIR
Sbjct:    3 CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSIR 150

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BLAST of g.arboreum_cottongen_reftransV1_0015566 vs. ExPASy TrEMBL
Match: A0A0D2QVY0_GOSRA (E3 ubiquitin-protein ligase OS=Gossypium raimondii GN=B456_004G114600 PE=3 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 4.651e-106
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1

Query:    1 CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSIR 444
            CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSIR
Sbjct:   52 CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSIR 199

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BLAST of g.arboreum_cottongen_reftransV1_0015566 vs. ExPASy TrEMBL
Match: A0A0B0PCP4_GOSAR (E3 ubiquitin-protein ligase OS=Gossypium arboreum GN=F383_27925 PE=3 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 5.699e-106
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1

Query:    1 CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSIR 444
            CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSIR
Sbjct:  135 CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSIR 282

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015566 vs. ExPASy TrEMBL
Match: A0A0D2RXD8_GOSRA (E3 ubiquitin-protein ligase OS=Gossypium raimondii GN=B456_004G114600 PE=3 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 7.906e-106
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1

Query:    1 CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSIR 444
            CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSIR
Sbjct:   63 CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSIR 210

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015566 vs. ExPASy TrEMBL
Match: A0A0D2MWW3_GOSRA (E3 ubiquitin-protein ligase OS=Gossypium raimondii GN=B456_004G114600 PE=3 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 1.071e-105
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1

Query:    1 CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSIR 444
            CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSIR
Sbjct:  135 CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSIR 282

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015566 vs. ExPASy TrEMBL
Match: B9RSF5_RICCO (E3 ubiquitin-protein ligase OS=Ricinus communis GN=RCOM_1242610 PE=3 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 3.286e-103
Identity = 143/148 (96.62%), Postives = 147/148 (99.32%), Query Frame = 1

Query:    1 CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSIR 444
            CKYYNLGCPEIFPYYSKLKHEA+CN+RPYNCPYAGSECSVVGDIPFLV HLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLI+EGTPRS+R
Sbjct:  142 CKYYNLGCPEIFPYYSKLKHEAVCNFRPYNCPYAGSECSVVGDIPFLVSHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIWEGTPRSVR 289

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015566 vs. ExPASy TrEMBL
Match: A0A061G1U5_THECC (E3 ubiquitin-protein ligase OS=Theobroma cacao GN=TCM_015414 PE=3 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 3.356e-102
Identity = 143/148 (96.62%), Postives = 146/148 (98.65%), Query Frame = 1

Query:    1 CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSIR 444
            CKYYNLGCPEIFPYYSKLKHEA+CNYRPY+CPYAGSECSVVGDIPFLV HLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDE EARNYSYSLEVGANGRKLI+EGTPRSIR
Sbjct:  134 CKYYNLGCPEIFPYYSKLKHEAICNYRPYSCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEIEARNYSYSLEVGANGRKLIWEGTPRSIR 281

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015566 vs. ExPASy TrEMBL
Match: M5X0U2_PRUPE (E3 ubiquitin-protein ligase OS=Prunus persica GN=PRUPE_ppa008410mg PE=3 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 2.335e-101
Identity = 141/148 (95.27%), Postives = 146/148 (98.65%), Query Frame = 1

Query:    1 CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSIR 444
            CKYY+LGCPEIFPYYSKLKHE++CN+RPYNCPYAGSECSVVGDIPFLV HLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDE EARNYSYSLEVGANGRKLI+EGTPRSIR
Sbjct:  129 CKYYSLGCPEIFPYYSKLKHESVCNFRPYNCPYAGSECSVVGDIPFLVSHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSIR 276

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015566 vs. ExPASy TrEMBL
Match: A0A0B2QTF4_GLYSO (E3 ubiquitin-protein ligase OS=Glycine soja GN=glysoja_015666 PE=3 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 3.377e-101
Identity = 139/148 (93.92%), Postives = 145/148 (97.97%), Query Frame = 1

Query:    1 CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSIR 444
            CKYY+LGCPEIFPYYSKLKHE +CN+RPY+CPYAGSECSVVGDIPFLV HLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDE EARNYSYSLEVGANGRKLI+EGTPRS+R
Sbjct:  128 CKYYSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVR 275

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015566 vs. ExPASy TrEMBL
Match: A0A068U9T5_COFCA (E3 ubiquitin-protein ligase OS=Coffea canephora GN=GSCOC_T00019981001 PE=3 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 4.348e-101
Identity = 140/148 (94.59%), Postives = 145/148 (97.97%), Query Frame = 1

Query:    1 CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSIR 444
            CKYY+LGCPEIFPYYSKLKHEA+CN+RPYNCPYAGSECSV GDIP+LV HLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDE EARNYSYSLEVGANGRKLI+EGTPRSIR
Sbjct:  127 CKYYSLGCPEIFPYYSKLKHEALCNFRPYNCPYAGSECSVTGDIPYLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSIR 274

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015566 vs. ExPASy Swiss-Prot
Match: SINA3_ARATH (E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 3.778e-98
Identity = 133/148 (89.86%), Postives = 142/148 (95.95%), Query Frame = 1

Query:    1 CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSIR 444
            CK+ +LGCPEIFPYYSKLKHE +CN+RPY+CPYAGSECSV GDIPFLV HLRDDHKVDMH+GCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNY+YSLEVG  GRKLI+EGTPRS+R
Sbjct:  121 CKHMSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVTGDIPFLVAHLRDDHKVDMHSGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYNYSLEVGGYGRKLIWEGTPRSVR 268

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015566 vs. ExPASy Swiss-Prot
Match: SINA4_ARATH (E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana GN=SINAT4 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.038e-96
Identity = 130/148 (87.84%), Postives = 140/148 (94.59%), Query Frame = 1

Query:    1 CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSIR 444
            CK+YNLGCPEIFPYYSKLKHE++CN+RPY+CPYAGSEC +VGDIPFLV HLRDDHKVDMH G TFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGM PVYMAFLRFMGDE +AR+YSYSLEVG +GRKL +EGTPRSIR
Sbjct:  122 CKFYNLGCPEIFPYYSKLKHESLCNFRPYSCPYAGSECGIVGDIPFLVAHLRDDHKVDMHAGSTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMGPVYMAFLRFMGDEEDARSYSYSLEVGGSGRKLTWEGTPRSIR 269

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015566 vs. ExPASy Swiss-Prot
Match: SINA5_ARATH (E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana GN=SINAT5 PE=1 SV=2)

HSP 1 Score: 281.952 bits (720), Expect = 2.679e-94
Identity = 128/148 (86.49%), Postives = 137/148 (92.57%), Query Frame = 1

Query:    1 CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSIR 444
            CKYYNLGC  IFPYYSKLKHE+ CN+RPY+CPYAGSEC+ VGDI FLV HLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVF CFGQYFCLHFEAFQLGMAPVYMAFLRFMGDE +ARNY+YSLEVG +GRK  +EGTPRS+R
Sbjct:  104 CKYYNLGCLGIFPYYSKLKHESQCNFRPYSCPYAGSECAAVGDITFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFQCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEDDARNYTYSLEVGGSGRKQTWEGTPRSVR 251

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015566 vs. ExPASy Swiss-Prot
Match: SINA2_ARATH (E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=1 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 6.392e-87
Identity = 121/148 (81.76%), Postives = 132/148 (89.19%), Query Frame = 1

Query:    1 CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSIR 444
            C+Y NLGC +IFPYYSKLKHE  C +RPY CPYAGSECSV GDIP LV HL+DDHKVDMH GCTFNHRYVKSNP EVENATWMLTVF+CFG+ FCLHFEAFQLGMAPVYMAFLRFMGDE EA+ +SYSLEVGA+GRKL ++G PRSIR
Sbjct:  118 CRYQNLGCHDIFPYYSKLKHEQHCRFRPYTCPYAGSECSVTGDIPTLVVHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAKKFSYSLEVGAHGRKLTWQGIPRSIR 265

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015566 vs. ExPASy Swiss-Prot
Match: SINA1_ARATH (Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana GN=SINAT1 PE=3 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.722e-86
Identity = 119/148 (80.41%), Postives = 131/148 (88.51%), Query Frame = 1

Query:    1 CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSIR 444
            C+Y NLGC +IFPYYSKLKHE  C +R Y+CPYAGSECSV GDIP LV HL+DDHKVDMH GCTFNHRYVKSNP EVENATWMLTVF+CFG+ FCLHFEAFQLGMAPVYMAFLRFMGDE EA+ +SYSLEVGA+ RKL ++G PRSIR
Sbjct:  115 CRYQNLGCQDIFPYYSKLKHEQHCRFRSYSCPYAGSECSVTGDIPTLVDHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAKKFSYSLEVGAHSRKLTWQGIPRSIR 262

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015566 vs. ExPASy Swiss-Prot
Match: SINA_SCHMA (E3 ubiquitin-protein ligase sina OS=Schistosoma mansoni GN=SINA PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.856e-21
Identity = 49/147 (33.33%), Postives = 78/147 (53.06%), Query Frame = 1

Query:    1 CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSI 441
            CKY   GCPE F Y SK +HEA C YRPY+CP  G+ C  +G++  ++ HL   HK  + T    +  ++ ++        W++ +  CFG  F L  E  +     ++ A ++ +G   +A  + Y LE+  + R+L +E  PRSI
Sbjct:  183 CKYSTSGCPETFHYTSKSEHEAACEYRPYDCPCPGASCKWLGELEQVMPHLVHHHK-SITTLQGEDIVFLATDISLPGAVDWVM-MQSCFGHSFMLVLEKQERVPDQIFFALVQLIGTRKQADQFVYRLELNGHRRRLTWEACPRSI 327

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015566 vs. ExPASy Swiss-Prot
Match: SIAH1_CAEBR (E3 ubiquitin-protein ligase siah-1 OS=Caenorhabditis briggsae GN=siah-1 PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 4.894e-18
Identity = 48/151 (31.79%), Postives = 79/151 (52.32%), Query Frame = 1

Query:    1 CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQ----LGMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSI 441
            CK+ N GCP  F +  K+ HE +C YRPY+CP  G+ C   G +  ++ HL+  HK  + T    +  ++ ++        W++ +  CF   F L  E  +         ++ A ++ +G + EA N+ Y LE+ AN R++ +E TPRSI
Sbjct:  228 CKFSNSGCPLNFHHIDKMDHEELCEYRPYSCPCPGASCKWQGALADVMDHLKKVHK-SITTLQGEDIVFLATDINLPGAVDWVM-MQSCFDYNFMLVLEKQEKYDPAQSTQMFYAVVQLIGSKKEADNFVYRLELSANRRRMSWEATPRSI 376

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015566 vs. ExPASy Swiss-Prot
Match: SIAH1_DANRE (E3 ubiquitin-protein ligase Siah1 OS=Danio rerio GN=siah1 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 2.611e-17
Identity = 45/148 (30.41%), Postives = 77/148 (52.03%), Query Frame = 1

Query:    1 CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQL-GMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSI 441
            CKY + GC    P+  K +HE +C +RPY+CP  G+ C   G +  ++ HL   HK  + T    +  ++ ++        W++ +  CFG +F L  E  +       + A ++ +G   +A N++Y LE+  + R+L +E TPRSI
Sbjct:   98 CKYASSGCEVTLPHTDKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLLHQHK-SITTLQGEDIVFLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSI 243

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015566 vs. ExPASy Swiss-Prot
Match: SIAH1_RAT (E3 ubiquitin-protein ligase SIAH1 OS=Rattus norvegicus GN=Siah1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.848e-17
Identity = 45/148 (30.41%), Postives = 77/148 (52.03%), Query Frame = 1

Query:    1 CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQL-GMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSI 441
            CKY + GC    P+  K +HE +C +RPY+CP  G+ C   G +  ++ HL   HK  + T    +  ++ ++        W++ +  CFG +F L  E  +       + A ++ +G   +A N++Y LE+  + R+L +E TPRSI
Sbjct:   98 CKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHK-SITTLQGEDIVFLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSI 243

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015566 vs. ExPASy Swiss-Prot
Match: SIA1A_MOUSE (E3 ubiquitin-protein ligase SIAH1A OS=Mus musculus GN=Siah1a PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.848e-17
Identity = 45/148 (30.41%), Postives = 77/148 (52.03%), Query Frame = 1

Query:    1 CKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPFLVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQL-GMAPVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSI 441
            CKY + GC    P+  K +HE +C +RPY+CP  G+ C   G +  ++ HL   HK  + T    +  ++ ++        W++ +  CFG +F L  E  +       + A ++ +G   +A N++Y LE+  + R+L +E TPRSI
Sbjct:   98 CKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHK-SITTLQGEDIVFLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSI 243

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0015566 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0015566 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0015566 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2R2V9_GOSRA	7.393e-107	100.00	E3 ubiquitin-protein ligase OS=Gossypium raimondii...	[more]
A0A0D2QVY0_GOSRA	4.651e-106	100.00	E3 ubiquitin-protein ligase OS=Gossypium raimondii...	[more]
A0A0B0PCP4_GOSAR	5.699e-106	100.00	E3 ubiquitin-protein ligase OS=Gossypium arboreum ...	[more]
A0A0D2RXD8_GOSRA	7.906e-106	100.00	E3 ubiquitin-protein ligase OS=Gossypium raimondii...	[more]
A0A0D2MWW3_GOSRA	1.071e-105	100.00	E3 ubiquitin-protein ligase OS=Gossypium raimondii...	[more]
B9RSF5_RICCO	3.286e-103	96.62	E3 ubiquitin-protein ligase OS=Ricinus communis GN...	[more]
A0A061G1U5_THECC	3.356e-102	96.62	E3 ubiquitin-protein ligase OS=Theobroma cacao GN=...	[more]
M5X0U2_PRUPE	2.335e-101	95.27	E3 ubiquitin-protein ligase OS=Prunus persica GN=P...	[more]
A0A0B2QTF4_GLYSO	3.377e-101	93.92	E3 ubiquitin-protein ligase OS=Glycine soja GN=gly...	[more]
A0A068U9T5_COFCA	4.348e-101	94.59	E3 ubiquitin-protein ligase OS=Coffea canephora GN...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0015566 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 24


Match Name	E-value	Identity	Description
SINA3_ARATH	3.778e-98	89.86	E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis ...	[more]
SINA4_ARATH	1.038e-96	87.84	E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis ...	[more]
SINA5_ARATH	2.679e-94	86.49	E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis ...	[more]
SINA2_ARATH	6.392e-87	81.76	E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis ...	[more]
SINA1_ARATH	2.722e-86	80.41	Putative E3 ubiquitin-protein ligase SINAT1 OS=Ara...	[more]
SINA_SCHMA	8.856e-21	33.33	E3 ubiquitin-protein ligase sina OS=Schistosoma ma...	[more]
SIAH1_CAEBR	4.894e-18	31.79	E3 ubiquitin-protein ligase siah-1 OS=Caenorhabdit...	[more]
SIAH1_DANRE	2.611e-17	30.41	E3 ubiquitin-protein ligase Siah1 OS=Danio rerio G...	[more]
SIAH1_RAT	2.848e-17	30.41	E3 ubiquitin-protein ligase SIAH1 OS=Rattus norveg...	[more]
SIA1A_MOUSE	2.848e-17	30.41	E3 ubiquitin-protein ligase SIAH1A OS=Mus musculus...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008974	TRAF-like	GENE3D	2.60.210.10		coord: 56..143 e-value: 3.8E-40 score: 136.3
IPR008974	TRAF-like	SUPERFAMILY	49599	TRAF domain-like	coord: 2..142
IPR013323	SIAH-type domain	GENE3D	3.90.890.10		coord: 2..46 e-value: 5.6E-16 score: 58.0
IPR018121	Seven-in-absentia protein, TRAF-like domain	PFAM	PF03145	Sina	coord: 2..143 e-value: 9.5E-53 score: 179.0
IPR004162	E3 ubiquitin-protein ligase SIN-like	PANTHER	PTHR10315	SEVEN IN ABSENTIA HOMOLOG	coord: 1..143
None	No IPR available	PANTHER	PTHR10315:SF34	E3 UBIQUITIN-PROTEIN LIGASE SINAT3-RELATED	coord: 1..143
IPR013010	Zinc finger, SIAH-type	PROSITE	PS51081	ZF_SIAH	coord: 1..51 score: 12.308

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0015566 ID=g.arboreum_cottongen_reftransV1_0015566; Name=g.arboreum_cottongen_reftransV1_0015566; organism=Gossypium arboreum; type=contig; length=445bp
TGCAAATACTACAACTTGGGATGCCCAGAAATATTTCCCTATTACAGCAA
ACTCAAACATGAGGCAATGTGCAACTACAGACCATACAATTGTCCCTATG
CTGGATCAGAATGTTCTGTTGTCGGGGATATTCCTTTCCTGGTTGGCCAT
CTGCGGGATGACCACAAGGTGGACATGCATACTGGCTGCACATTTAACCA
TCGCTATGTTAAGTCCAACCCTCGGGAAGTAGAGAATGCTACCTGGATGC
TAACAGTCTTCCATTGCTTTGGTCAGTATTTTTGTCTTCACTTTGAAGCT
TTCCAGCTTGGCATGGCCCCTGTCTACATGGCATTTCTCCGTTTCATGGG
TGATGAAACAGAGGCTAGGAACTATAGCTATAGCCTTGAGGTTGGAGCAA
ATGGCCGAAAACTTATATTTGAAGGCACCCCACGTAGCATCCGTG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR008974	TRAF-like
IPR013323	SIAH-type
IPR018121	7-in-absentia-prot_TRAF-dom
IPR004162	SINA-like
IPR013010	Znf_SIAH

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding
GO:0004842	ubiquitin-protein transferase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0016567	protein ubiquitination
GO:0006511	ubiquitin-dependent protein catabolic process
GO:0007275	multicellular organism development

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Search form

g.arboreum_cottongen_reftransV1_0015566, g.arboreum_cottongen_reftransV1_0015566 (contig) Gossypium arboreum

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