g.arboreum_cottongen_reftransV1_0007121, g.arboreum_cottongen_reftransV1_0007121 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0007121
Unique Name	g.arboreum_cottongen_reftransV1_0007121
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	1735

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr6	chromosome	g.arboreum_cottongen_reftransV1_0007121:1..1735 . Chr6:55807445..55810228 -		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0007121 vs. ExPASy TrEMBL
Match: A0A0B0P3Q4_GOSAR (COMPASS component SWD1 OS=Gossypium arboreum GN=F383_05614 PE=4 SV=1)

HSP 1 Score: 893.264 bits (2307), Expect = 0.000e+0
Identity = 440/440 (100.00%), Postives = 440/440 (100.00%), Query Frame = -3

Query:  414 TKRLGDGLGLPIARTKSWTGQDLGQSQQQPYPATGASVTNPTVSAPGDLFGTDSWVQPALVSQSAPATKGVGTAAGPIPEDFFQNTIPSLQVAAALPPPGSYLSKLDQTPQKVEVGGKVPPDQVNAPAADIGLPGGGVPPQSAEQPIPPESLALPGGVIPPQYSAPAVGLPQPQVQPAQMPLSTQPLDLSALGVPNSAESEKPTSSGPTPTSVRPGQVPRGAAAPICFKTGLAHLEQNQLPDSLSCFDEAFLALAKDNSRGADIKAQATICAQYKIAVTLLQEITRLQKVQGPRALSAKDEMARLSRHLGSLPLQAKHRINCIRTAIKRNMDVQNYAYAKQMLELLLSKAPPGKQEELRSLIDICVQRGLTNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRSDALGGAGPVPSPFG 1733
            TKRLGDGLGLPIARTKSWTGQDLGQSQQQPYPATGASVTNPTVSAPGDLFGTDSWVQPALVSQSAPATKGVGTAAGPIPEDFFQNTIPSLQVAAALPPPGSYLSKLDQTPQKVEVGGKVPPDQVNAPAADIGLPGGGVPPQSAEQPIPPESLALPGGVIPPQYSAPAVGLPQPQVQPAQMPLSTQPLDLSALGVPNSAESEKPTSSGPTPTSVRPGQVPRGAAAPICFKTGLAHLEQNQLPDSLSCFDEAFLALAKDNSRGADIKAQATICAQYKIAVTLLQEITRLQKVQGPRALSAKDEMARLSRHLGSLPLQAKHRINCIRTAIKRNMDVQNYAYAKQMLELLLSKAPPGKQEELRSLIDICVQRGLTNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRSDALGGAGPVPSPFG
Sbjct: 1157 TKRLGDGLGLPIARTKSWTGQDLGQSQQQPYPATGASVTNPTVSAPGDLFGTDSWVQPALVSQSAPATKGVGTAAGPIPEDFFQNTIPSLQVAAALPPPGSYLSKLDQTPQKVEVGGKVPPDQVNAPAADIGLPGGGVPPQSAEQPIPPESLALPGGVIPPQYSAPAVGLPQPQVQPAQMPLSTQPLDLSALGVPNSAESEKPTSSGPTPTSVRPGQVPRGAAAPICFKTGLAHLEQNQLPDSLSCFDEAFLALAKDNSRGADIKAQATICAQYKIAVTLLQEITRLQKVQGPRALSAKDEMARLSRHLGSLPLQAKHRINCIRTAIKRNMDVQNYAYAKQMLELLLSKAPPGKQEELRSLIDICVQRGLTNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRSDALGGAGPVPSPFG 1596

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BLAST of g.arboreum_cottongen_reftransV1_0007121 vs. ExPASy TrEMBL
Match: A0A0D2RBE2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G074500 PE=4 SV=1)

HSP 1 Score: 879.782 bits (2272), Expect = 0.000e+0
Identity = 433/440 (98.41%), Postives = 435/440 (98.86%), Query Frame = -3

Query:  414 TKRLGDGLGLPIARTKSWTGQDLGQSQQQPYPATGASVTNPTVSAPGDLFGTDSWVQPALVSQSAPATKGVGTAAGPIPEDFFQNTIPSLQVAAALPPPGSYLSKLDQTPQKVEVGGKVPPDQVNAPAADIGLPGGGVPPQSAEQPIPPESLALPGGVIPPQYSAPAVGLPQPQVQPAQMPLSTQPLDLSALGVPNSAESEKPTSSGPTPTSVRPGQVPRGAAAPICFKTGLAHLEQNQLPDSLSCFDEAFLALAKDNSRGADIKAQATICAQYKIAVTLLQEITRLQKVQGPRALSAKDEMARLSRHLGSLPLQAKHRINCIRTAIKRNMDVQNYAYAKQMLELLLSKAPPGKQEELRSLIDICVQRGLTNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRSDALGGAGPVPSPFG 1733
            TKRLGDGLGLPIARTKSWTGQDLGQSQQQPYPAT AS+TNPTVSAPGDLFGTDSWVQPALVS+SAPATKGVGTAAGPIPEDFFQNTIPSLQVAAALPPPGSYLSKLDQTPQKVEVGGKVPPD VNAPAADIGLPGGGVPPQSAEQPIPPESLALPGG IPPQYSAPA GLPQPQVQPAQMPLSTQPLDLSALGVPNSAESEKPTSS PTPTSVRPGQVPRGAAAPICFKTGLAHLEQNQLPDSLSCFDEAFLALAKDNSRGADIKAQATICAQYKIAVTLLQEITRLQKVQGPRALSAKDEMARLSRHLGSLPLQAKHRINCIRTAIKRNMDVQNYAYAKQMLELLLSKAPPGKQEELRSLIDICVQRGLTNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRSDALGGAGPVPSPFG
Sbjct: 1171 TKRLGDGLGLPIARTKSWTGQDLGQSQQQPYPATSASLTNPTVSAPGDLFGTDSWVQPALVSESAPATKGVGTAAGPIPEDFFQNTIPSLQVAAALPPPGSYLSKLDQTPQKVEVGGKVPPDHVNAPAADIGLPGGGVPPQSAEQPIPPESLALPGGGIPPQYSAPAAGLPQPQVQPAQMPLSTQPLDLSALGVPNSAESEKPTSSAPTPTSVRPGQVPRGAAAPICFKTGLAHLEQNQLPDSLSCFDEAFLALAKDNSRGADIKAQATICAQYKIAVTLLQEITRLQKVQGPRALSAKDEMARLSRHLGSLPLQAKHRINCIRTAIKRNMDVQNYAYAKQMLELLLSKAPPGKQEELRSLIDICVQRGLTNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRSDALGGAGPVPSPFG 1610

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BLAST of g.arboreum_cottongen_reftransV1_0007121 vs. ExPASy TrEMBL
Match: A0A0D2PQJ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G074500 PE=4 SV=1)

HSP 1 Score: 879.782 bits (2272), Expect = 0.000e+0
Identity = 433/440 (98.41%), Postives = 435/440 (98.86%), Query Frame = -3

Query:  414 TKRLGDGLGLPIARTKSWTGQDLGQSQQQPYPATGASVTNPTVSAPGDLFGTDSWVQPALVSQSAPATKGVGTAAGPIPEDFFQNTIPSLQVAAALPPPGSYLSKLDQTPQKVEVGGKVPPDQVNAPAADIGLPGGGVPPQSAEQPIPPESLALPGGVIPPQYSAPAVGLPQPQVQPAQMPLSTQPLDLSALGVPNSAESEKPTSSGPTPTSVRPGQVPRGAAAPICFKTGLAHLEQNQLPDSLSCFDEAFLALAKDNSRGADIKAQATICAQYKIAVTLLQEITRLQKVQGPRALSAKDEMARLSRHLGSLPLQAKHRINCIRTAIKRNMDVQNYAYAKQMLELLLSKAPPGKQEELRSLIDICVQRGLTNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRSDALGGAGPVPSPFG 1733
            TKRLGDGLGLPIARTKSWTGQDLGQSQQQPYPAT AS+TNPTVSAPGDLFGTDSWVQPALVS+SAPATKGVGTAAGPIPEDFFQNTIPSLQVAAALPPPGSYLSKLDQTPQKVEVGGKVPPD VNAPAADIGLPGGGVPPQSAEQPIPPESLALPGG IPPQYSAPA GLPQPQVQPAQMPLSTQPLDLSALGVPNSAESEKPTSS PTPTSVRPGQVPRGAAAPICFKTGLAHLEQNQLPDSLSCFDEAFLALAKDNSRGADIKAQATICAQYKIAVTLLQEITRLQKVQGPRALSAKDEMARLSRHLGSLPLQAKHRINCIRTAIKRNMDVQNYAYAKQMLELLLSKAPPGKQEELRSLIDICVQRGLTNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRSDALGGAGPVPSPFG
Sbjct: 1185 TKRLGDGLGLPIARTKSWTGQDLGQSQQQPYPATSASLTNPTVSAPGDLFGTDSWVQPALVSESAPATKGVGTAAGPIPEDFFQNTIPSLQVAAALPPPGSYLSKLDQTPQKVEVGGKVPPDHVNAPAADIGLPGGGVPPQSAEQPIPPESLALPGGGIPPQYSAPAAGLPQPQVQPAQMPLSTQPLDLSALGVPNSAESEKPTSSAPTPTSVRPGQVPRGAAAPICFKTGLAHLEQNQLPDSLSCFDEAFLALAKDNSRGADIKAQATICAQYKIAVTLLQEITRLQKVQGPRALSAKDEMARLSRHLGSLPLQAKHRINCIRTAIKRNMDVQNYAYAKQMLELLLSKAPPGKQEELRSLIDICVQRGLTNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRSDALGGAGPVPSPFG 1624

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BLAST of g.arboreum_cottongen_reftransV1_0007121 vs. ExPASy TrEMBL
Match: A0A0D2SWP2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G074500 PE=4 SV=1)

HSP 1 Score: 879.396 bits (2271), Expect = 0.000e+0
Identity = 433/440 (98.41%), Postives = 435/440 (98.86%), Query Frame = -3

Query:  414 TKRLGDGLGLPIARTKSWTGQDLGQSQQQPYPATGASVTNPTVSAPGDLFGTDSWVQPALVSQSAPATKGVGTAAGPIPEDFFQNTIPSLQVAAALPPPGSYLSKLDQTPQKVEVGGKVPPDQVNAPAADIGLPGGGVPPQSAEQPIPPESLALPGGVIPPQYSAPAVGLPQPQVQPAQMPLSTQPLDLSALGVPNSAESEKPTSSGPTPTSVRPGQVPRGAAAPICFKTGLAHLEQNQLPDSLSCFDEAFLALAKDNSRGADIKAQATICAQYKIAVTLLQEITRLQKVQGPRALSAKDEMARLSRHLGSLPLQAKHRINCIRTAIKRNMDVQNYAYAKQMLELLLSKAPPGKQEELRSLIDICVQRGLTNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRSDALGGAGPVPSPFG 1733
            TKRLGDGLGLPIARTKSWTGQDLGQSQQQPYPAT AS+TNPTVSAPGDLFGTDSWVQPALVS+SAPATKGVGTAAGPIPEDFFQNTIPSLQVAAALPPPGSYLSKLDQTPQKVEVGGKVPPD VNAPAADIGLPGGGVPPQSAEQPIPPESLALPGG IPPQYSAPA GLPQPQVQPAQMPLSTQPLDLSALGVPNSAESEKPTSS PTPTSVRPGQVPRGAAAPICFKTGLAHLEQNQLPDSLSCFDEAFLALAKDNSRGADIKAQATICAQYKIAVTLLQEITRLQKVQGPRALSAKDEMARLSRHLGSLPLQAKHRINCIRTAIKRNMDVQNYAYAKQMLELLLSKAPPGKQEELRSLIDICVQRGLTNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRSDALGGAGPVPSPFG
Sbjct: 1134 TKRLGDGLGLPIARTKSWTGQDLGQSQQQPYPATSASLTNPTVSAPGDLFGTDSWVQPALVSESAPATKGVGTAAGPIPEDFFQNTIPSLQVAAALPPPGSYLSKLDQTPQKVEVGGKVPPDHVNAPAADIGLPGGGVPPQSAEQPIPPESLALPGGGIPPQYSAPAAGLPQPQVQPAQMPLSTQPLDLSALGVPNSAESEKPTSSAPTPTSVRPGQVPRGAAAPICFKTGLAHLEQNQLPDSLSCFDEAFLALAKDNSRGADIKAQATICAQYKIAVTLLQEITRLQKVQGPRALSAKDEMARLSRHLGSLPLQAKHRINCIRTAIKRNMDVQNYAYAKQMLELLLSKAPPGKQEELRSLIDICVQRGLTNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRSDALGGAGPVPSPFG 1573

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BLAST of g.arboreum_cottongen_reftransV1_0007121 vs. ExPASy TrEMBL
Match: A0A0D2TZ22_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G074500 PE=4 SV=1)

HSP 1 Score: 879.396 bits (2271), Expect = 0.000e+0
Identity = 433/440 (98.41%), Postives = 435/440 (98.86%), Query Frame = -3

Query:  414 TKRLGDGLGLPIARTKSWTGQDLGQSQQQPYPATGASVTNPTVSAPGDLFGTDSWVQPALVSQSAPATKGVGTAAGPIPEDFFQNTIPSLQVAAALPPPGSYLSKLDQTPQKVEVGGKVPPDQVNAPAADIGLPGGGVPPQSAEQPIPPESLALPGGVIPPQYSAPAVGLPQPQVQPAQMPLSTQPLDLSALGVPNSAESEKPTSSGPTPTSVRPGQVPRGAAAPICFKTGLAHLEQNQLPDSLSCFDEAFLALAKDNSRGADIKAQATICAQYKIAVTLLQEITRLQKVQGPRALSAKDEMARLSRHLGSLPLQAKHRINCIRTAIKRNMDVQNYAYAKQMLELLLSKAPPGKQEELRSLIDICVQRGLTNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRSDALGGAGPVPSPFG 1733
            TKRLGDGLGLPIARTKSWTGQDLGQSQQQPYPAT AS+TNPTVSAPGDLFGTDSWVQPALVS+SAPATKGVGTAAGPIPEDFFQNTIPSLQVAAALPPPGSYLSKLDQTPQKVEVGGKVPPD VNAPAADIGLPGGGVPPQSAEQPIPPESLALPGG IPPQYSAPA GLPQPQVQPAQMPLSTQPLDLSALGVPNSAESEKPTSS PTPTSVRPGQVPRGAAAPICFKTGLAHLEQNQLPDSLSCFDEAFLALAKDNSRGADIKAQATICAQYKIAVTLLQEITRLQKVQGPRALSAKDEMARLSRHLGSLPLQAKHRINCIRTAIKRNMDVQNYAYAKQMLELLLSKAPPGKQEELRSLIDICVQRGLTNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRSDALGGAGPVPSPFG
Sbjct: 1195 TKRLGDGLGLPIARTKSWTGQDLGQSQQQPYPATSASLTNPTVSAPGDLFGTDSWVQPALVSESAPATKGVGTAAGPIPEDFFQNTIPSLQVAAALPPPGSYLSKLDQTPQKVEVGGKVPPDHVNAPAADIGLPGGGVPPQSAEQPIPPESLALPGGGIPPQYSAPAAGLPQPQVQPAQMPLSTQPLDLSALGVPNSAESEKPTSSAPTPTSVRPGQVPRGAAAPICFKTGLAHLEQNQLPDSLSCFDEAFLALAKDNSRGADIKAQATICAQYKIAVTLLQEITRLQKVQGPRALSAKDEMARLSRHLGSLPLQAKHRINCIRTAIKRNMDVQNYAYAKQMLELLLSKAPPGKQEELRSLIDICVQRGLTNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRSDALGGAGPVPSPFG 1634

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BLAST of g.arboreum_cottongen_reftransV1_0007121 vs. ExPASy TrEMBL
Match: A0A061DG68_THECC (Transducin/WD40 repeat-like superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_000575 PE=4 SV=1)

HSP 1 Score: 796.193 bits (2055), Expect = 0.000e+0
Identity = 391/442 (88.46%), Postives = 407/442 (92.08%), Query Frame = -3

Query:  414 TKRLGDGLGLPIARTKSWTG--QDLGQSQQQPYPATGASVTNPTVSAPGDLFGTDSWVQPALVSQSAPATKGVGTAAGPIPEDFFQNTIPSLQVAAALPPPGSYLSKLDQTPQKVEVGGKVPPDQVNAPAADIGLPGGGVPPQSAEQPIPPESLALPGGVIPPQYSAPAVGLPQPQVQPAQMPLSTQPLDLSALGVPNSAESEKPTSSGPTPTSVRPGQVPRGAAAPICFKTGLAHLEQNQLPDSLSCFDEAFLALAKDNSRGADIKAQATICAQYKIAVTLLQEITRLQKVQGPRALSAKDEMARLSRHLGSLPLQAKHRINCIRTAIKRNMDVQNYAYAKQMLELLLSKAPPGKQEELRSLIDICVQRGLTNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRSDALGGAGPVPSPFG 1733
            TKRLGDGLGLPI+RTKS TG  QDLGQSQQQPYPAT  SVTNPTVSAPGDLFGTDSW+QPA VSQ+AP TKGVG AAGPIPEDFFQNTIPSLQVAAALPPPG+YLSKLDQT ++VEVGGKVPPDQV APA+DIGLP GGVPPQ+ E+PIP +S+ LP G +PPQYS PA G+PQPQVQPAQ PLS QPLDLSALGVPNSAESEKP  S   PTSVRPGQVPRGAAA ICF+TGLAHLEQNQLPD+LSCFDEAFLALAKDNSRGADIKAQATICAQYKIAV LLQEITRLQKVQGP ALSAKDEMARLSRHLGSLPLQA HRINCIRTAIKRNMDVQNYAYAKQMLELL SKAPPGKQEELRSLIDICVQRGLTNKSIDPLEDPSQFC ATL RLSTIGYDVCDLCGAKFSALS PGC+ICGMGSIKRSDALGGA PV SPFG
Sbjct: 1189 TKRLGDGLGLPISRTKSLTGVSQDLGQSQQQPYPATSGSVTNPTVSAPGDLFGTDSWIQPASVSQTAPTTKGVGIAAGPIPEDFFQNTIPSLQVAAALPPPGTYLSKLDQTSRQVEVGGKVPPDQVIAPASDIGLPDGGVPPQAHERPIPSDSIGLPDGGVPPQYSVPAAGMPQPQVQPAQTPLSIQPLDLSALGVPNSAESEKPAPSASAPTSVRPGQVPRGAAASICFRTGLAHLEQNQLPDALSCFDEAFLALAKDNSRGADIKAQATICAQYKIAVRLLQEITRLQKVQGPSALSAKDEMARLSRHLGSLPLQANHRINCIRTAIKRNMDVQNYAYAKQMLELLFSKAPPGKQEELRSLIDICVQRGLTNKSIDPLEDPSQFCGATLGRLSTIGYDVCDLCGAKFSALSMPGCVICGMGSIKRSDALGGAAPVASPFG 1630

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BLAST of g.arboreum_cottongen_reftransV1_0007121 vs. ExPASy TrEMBL
Match: A0A061DMZ9_THECC (Transducin/WD40 repeat-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_000575 PE=4 SV=1)

HSP 1 Score: 796.193 bits (2055), Expect = 0.000e+0
Identity = 391/442 (88.46%), Postives = 407/442 (92.08%), Query Frame = -3

Query:  414 TKRLGDGLGLPIARTKSWTG--QDLGQSQQQPYPATGASVTNPTVSAPGDLFGTDSWVQPALVSQSAPATKGVGTAAGPIPEDFFQNTIPSLQVAAALPPPGSYLSKLDQTPQKVEVGGKVPPDQVNAPAADIGLPGGGVPPQSAEQPIPPESLALPGGVIPPQYSAPAVGLPQPQVQPAQMPLSTQPLDLSALGVPNSAESEKPTSSGPTPTSVRPGQVPRGAAAPICFKTGLAHLEQNQLPDSLSCFDEAFLALAKDNSRGADIKAQATICAQYKIAVTLLQEITRLQKVQGPRALSAKDEMARLSRHLGSLPLQAKHRINCIRTAIKRNMDVQNYAYAKQMLELLLSKAPPGKQEELRSLIDICVQRGLTNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRSDALGGAGPVPSPFG 1733
            TKRLGDGLGLPI+RTKS TG  QDLGQSQQQPYPAT  SVTNPTVSAPGDLFGTDSW+QPA VSQ+AP TKGVG AAGPIPEDFFQNTIPSLQVAAALPPPG+YLSKLDQT ++VEVGGKVPPDQV APA+DIGLP GGVPPQ+ E+PIP +S+ LP G +PPQYS PA G+PQPQVQPAQ PLS QPLDLSALGVPNSAESEKP  S   PTSVRPGQVPRGAAA ICF+TGLAHLEQNQLPD+LSCFDEAFLALAKDNSRGADIKAQATICAQYKIAV LLQEITRLQKVQGP ALSAKDEMARLSRHLGSLPLQA HRINCIRTAIKRNMDVQNYAYAKQMLELL SKAPPGKQEELRSLIDICVQRGLTNKSIDPLEDPSQFC ATL RLSTIGYDVCDLCGAKFSALS PGC+ICGMGSIKRSDALGGA PV SPFG
Sbjct: 1180 TKRLGDGLGLPISRTKSLTGVSQDLGQSQQQPYPATSGSVTNPTVSAPGDLFGTDSWIQPASVSQTAPTTKGVGIAAGPIPEDFFQNTIPSLQVAAALPPPGTYLSKLDQTSRQVEVGGKVPPDQVIAPASDIGLPDGGVPPQAHERPIPSDSIGLPDGGVPPQYSVPAAGMPQPQVQPAQTPLSIQPLDLSALGVPNSAESEKPAPSASAPTSVRPGQVPRGAAASICFRTGLAHLEQNQLPDALSCFDEAFLALAKDNSRGADIKAQATICAQYKIAVRLLQEITRLQKVQGPSALSAKDEMARLSRHLGSLPLQANHRINCIRTAIKRNMDVQNYAYAKQMLELLFSKAPPGKQEELRSLIDICVQRGLTNKSIDPLEDPSQFCGATLGRLSTIGYDVCDLCGAKFSALSMPGCVICGMGSIKRSDALGGAAPVASPFG 1621

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0007121 vs. ExPASy TrEMBL
Match: A0A061DGB1_THECC (Transducin/WD40 repeat-like superfamily protein isoform 3 OS=Theobroma cacao GN=TCM_000575 PE=4 SV=1)

HSP 1 Score: 796.193 bits (2055), Expect = 0.000e+0
Identity = 391/442 (88.46%), Postives = 407/442 (92.08%), Query Frame = -3

Query:  414 TKRLGDGLGLPIARTKSWTG--QDLGQSQQQPYPATGASVTNPTVSAPGDLFGTDSWVQPALVSQSAPATKGVGTAAGPIPEDFFQNTIPSLQVAAALPPPGSYLSKLDQTPQKVEVGGKVPPDQVNAPAADIGLPGGGVPPQSAEQPIPPESLALPGGVIPPQYSAPAVGLPQPQVQPAQMPLSTQPLDLSALGVPNSAESEKPTSSGPTPTSVRPGQVPRGAAAPICFKTGLAHLEQNQLPDSLSCFDEAFLALAKDNSRGADIKAQATICAQYKIAVTLLQEITRLQKVQGPRALSAKDEMARLSRHLGSLPLQAKHRINCIRTAIKRNMDVQNYAYAKQMLELLLSKAPPGKQEELRSLIDICVQRGLTNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRSDALGGAGPVPSPFG 1733
            TKRLGDGLGLPI+RTKS TG  QDLGQSQQQPYPAT  SVTNPTVSAPGDLFGTDSW+QPA VSQ+AP TKGVG AAGPIPEDFFQNTIPSLQVAAALPPPG+YLSKLDQT ++VEVGGKVPPDQV APA+DIGLP GGVPPQ+ E+PIP +S+ LP G +PPQYS PA G+PQPQVQPAQ PLS QPLDLSALGVPNSAESEKP  S   PTSVRPGQVPRGAAA ICF+TGLAHLEQNQLPD+LSCFDEAFLALAKDNSRGADIKAQATICAQYKIAV LLQEITRLQKVQGP ALSAKDEMARLSRHLGSLPLQA HRINCIRTAIKRNMDVQNYAYAKQMLELL SKAPPGKQEELRSLIDICVQRGLTNKSIDPLEDPSQFC ATL RLSTIGYDVCDLCGAKFSALS PGC+ICGMGSIKRSDALGGA PV SPFG
Sbjct: 1190 TKRLGDGLGLPISRTKSLTGVSQDLGQSQQQPYPATSGSVTNPTVSAPGDLFGTDSWIQPASVSQTAPTTKGVGIAAGPIPEDFFQNTIPSLQVAAALPPPGTYLSKLDQTSRQVEVGGKVPPDQVIAPASDIGLPDGGVPPQAHERPIPSDSIGLPDGGVPPQYSVPAAGMPQPQVQPAQTPLSIQPLDLSALGVPNSAESEKPAPSASAPTSVRPGQVPRGAAASICFRTGLAHLEQNQLPDALSCFDEAFLALAKDNSRGADIKAQATICAQYKIAVRLLQEITRLQKVQGPSALSAKDEMARLSRHLGSLPLQANHRINCIRTAIKRNMDVQNYAYAKQMLELLFSKAPPGKQEELRSLIDICVQRGLTNKSIDPLEDPSQFCGATLGRLSTIGYDVCDLCGAKFSALSMPGCVICGMGSIKRSDALGGAAPVASPFG 1631

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0007121 vs. ExPASy TrEMBL
Match: A0A061DHS4_THECC (Transducin/WD40 repeat-like superfamily protein isoform 4 OS=Theobroma cacao GN=TCM_000575 PE=4 SV=1)

HSP 1 Score: 782.711 bits (2020), Expect = 0.000e+0
Identity = 387/442 (87.56%), Postives = 403/442 (91.18%), Query Frame = -3

Query:  414 TKRLGDGLGLPIARTKSWTG--QDLGQSQQQPYPATGASVTNPTVSAPGDLFGTDSWVQPALVSQSAPATKGVGTAAGPIPEDFFQNTIPSLQVAAALPPPGSYLSKLDQTPQKVEVGGKVPPDQVNAPAADIGLPGGGVPPQSAEQPIPPESLALPGGVIPPQYSAPAVGLPQPQVQPAQMPLSTQPLDLSALGVPNSAESEKPTSSGPTPTSVRPGQVPRGAAAPICFKTGLAHLEQNQLPDSLSCFDEAFLALAKDNSRGADIKAQATICAQYKIAVTLLQEITRLQKVQGPRALSAKDEMARLSRHLGSLPLQAKHRINCIRTAIKRNMDVQNYAYAKQMLELLLSKAPPGKQEELRSLIDICVQRGLTNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRSDALGGAGPVPSPFG 1733
            TKRLGDGLGLPI+RTKS TG  QDLGQSQQQPYPAT  SVTNPTVSAPGDLFGTDSW+QPA VSQ+AP TKGVG AAGPIPEDFFQNTIPSLQVAAALPPPG+YLSKLDQT ++VEVGGKVPPDQV APA+DIGLP GGVPPQ+ E+PIP +S+ LP G +PPQYS PA G+PQPQVQPAQ PLS QPLDLSALGVPNSAESEKP  S   PTSVRPGQVPRGAAA ICF+TGLAHLEQNQLPD+LSCFDEAFLALAKDNSRGADIKAQATICAQYKIA     EITRLQKVQGP ALSAKDEMARLSRHLGSLPLQA HRINCIRTAIKRNMDVQNYAYAKQMLELL SKAPPGKQEELRSLIDICVQRGLTNKSIDPLEDPSQFC ATL RLSTIGYDVCDLCGAKFSALS PGC+ICGMGSIKRSDALGGA PV SPFG
Sbjct:  952 TKRLGDGLGLPISRTKSLTGVSQDLGQSQQQPYPATSGSVTNPTVSAPGDLFGTDSWIQPASVSQTAPTTKGVGIAAGPIPEDFFQNTIPSLQVAAALPPPGTYLSKLDQTSRQVEVGGKVPPDQVIAPASDIGLPDGGVPPQAHERPIPSDSIGLPDGGVPPQYSVPAAGMPQPQVQPAQTPLSIQPLDLSALGVPNSAESEKPAPSASAPTSVRPGQVPRGAAASICFRTGLAHLEQNQLPDALSCFDEAFLALAKDNSRGADIKAQATICAQYKIA-----EITRLQKVQGPSALSAKDEMARLSRHLGSLPLQANHRINCIRTAIKRNMDVQNYAYAKQMLELLFSKAPPGKQEELRSLIDICVQRGLTNKSIDPLEDPSQFCGATLGRLSTIGYDVCDLCGAKFSALSMPGCVICGMGSIKRSDALGGAAPVASPFG 1388

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BLAST of g.arboreum_cottongen_reftransV1_0007121 vs. ExPASy TrEMBL
Match: A0A0D2SHF9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G211000 PE=4 SV=1)

HSP 1 Score: 752.666 bits (1942), Expect = 0.000e+0
Identity = 379/443 (85.55%), Postives = 393/443 (88.71%), Query Frame = -3

Query:  414 TKRLGDGLGLPIARTKSWTG--QDLGQSQQQPYPATGASVTNPTVSAPGDLFGTDSWVQPALVSQSAPA-TKGVGTAAGPIPEDFFQNTIPSLQVAAALPPPGSYLSKLDQTPQKVEVGGKVPPDQVNAPAADIGLPGGGVPPQSAEQPIPPESLALPGGVIPPQYSAPAVGLPQPQVQPAQMPLSTQPLDLSALGVPNSAESEKPTSSGPTPTSVRPGQVPRGAAAPICFKTGLAHLEQNQLPDSLSCFDEAFLALAKDNSRGADIKAQATICAQYKIAVTLLQEITRLQKVQGPRALSAKDEMARLSRHLGSLPLQAKHRINCIRTAIKRNMDVQNYAYAKQMLELLLSKAPPGKQEELRSLIDICVQRGLTNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRSDALGGAGPVPSPFG 1733
            TKRLGDGLGLP  R KS +G  QDLGQSQQQPYPAT  +VTNPTVSAPGDLFGT+ W QP  +S+  PA TKGVG AAGPIPEDFFQNTIPSLQVAAALPPPG+ +SKLD T Q  EVG KVPPDQVNAP A  GLP GGVPPQ+ EQ IPPES ALP G +PPQYSAPA G+P+PQVQPAQ  LSTQPLDLSALGVP + ES KPT    TP SVRPGQVPRGA A ICFKTGLAHLE NQLPDSLSCF+EAFLALAKDNSRGADIKAQATICAQYKIAVTLLQEI+RLQKVQGPRALSAKDEMARLSRHLGSLPLQAKHRINCIRTAIKRNMDVQNY YAKQMLELLLSKAP GKQEELRSLIDICVQRGLTNKSIDPLEDPSQFC ATLSRLSTIGYDVCDLCGAKFSALS  GCIICGMGSIKRSDALGGAGPVPSPFG
Sbjct: 1014 TKRLGDGLGLPKTRAKSLSGIFQDLGQSQQQPYPATCGAVTNPTVSAPGDLFGTEPWAQPTFLSKPTPAPTKGVGIAAGPIPEDFFQNTIPSLQVAAALPPPGTLISKLDHTSQPAEVGRKVPPDQVNAPVASAGLPDGGVPPQATEQSIPPESFALPDGGVPPQYSAPAAGMPRPQVQPAQTQLSTQPLDLSALGVPVTTESGKPT----TPASVRPGQVPRGAPASICFKTGLAHLELNQLPDSLSCFNEAFLALAKDNSRGADIKAQATICAQYKIAVTLLQEISRLQKVQGPRALSAKDEMARLSRHLGSLPLQAKHRINCIRTAIKRNMDVQNYGYAKQMLELLLSKAPQGKQEELRSLIDICVQRGLTNKSIDPLEDPSQFCGATLSRLSTIGYDVCDLCGAKFSALSTSGCIICGMGSIKRSDALGGAGPVPSPFG 1452

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0007121 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0007121 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0007121 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0P3Q4_GOSAR	0.000e+0	100.00	COMPASS component SWD1 OS=Gossypium arboreum GN=F3...	[more]
A0A0D2RBE2_GOSRA	0.000e+0	98.41	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2PQJ0_GOSRA	0.000e+0	98.41	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2SWP2_GOSRA	0.000e+0	98.41	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2TZ22_GOSRA	0.000e+0	98.41	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061DG68_THECC	0.000e+0	88.46	Transducin/WD40 repeat-like superfamily protein is...	[more]
A0A061DMZ9_THECC	0.000e+0	88.46	Transducin/WD40 repeat-like superfamily protein is...	[more]
A0A061DGB1_THECC	0.000e+0	88.46	Transducin/WD40 repeat-like superfamily protein is...	[more]
A0A061DHS4_THECC	0.000e+0	87.56	Transducin/WD40 repeat-like superfamily protein is...	[more]
A0A0D2SHF9_GOSRA	0.000e+0	85.55	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0007121 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010714	Coatomer, alpha subunit, C-terminal	PFAM	PF06957	COPI_C	coord: 253..416 e-value: 5.5E-6 score: 25.3
None	No IPR available	PANTHER	PTHR19878:SF4	TRANSDUCIN/WD40 DOMAIN-CONTAINING PROTEIN	coord: 3..433
None	No IPR available	PANTHER	PTHR19878	AUTOPHAGY PROTEIN 16-LIKE	coord: 3..433

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0007121 ID=g.arboreum_cottongen_reftransV1_0007121; Name=g.arboreum_cottongen_reftransV1_0007121; organism=Gossypium arboreum; type=contig; length=1735bp
TGCTTGTTAAAAAAAAAGGCATATATCTATCTCCAAAGGTAAAATACAAA
CATTAGTTCCTAACTAATGAAAAATTGAACGTAAAACCCTATATTACAAA
AGAGGAAGGTCCCAAGTCACAAAACAAACAAATGGGGCTGAGCCTGAGGC
TTAAGGTGATATATAGGAAAAAAAAGTAGGGTAGTGGGGTACTCAAAAAA
AGAATGATATACAAACAAATGAAAAGAGAAATTATACATATGCCCCGCGG
AACCTGCTAGATTCTTGATGGTGAAGGAACTCAACTTTGAAATGAAATAT
CAGTGTCCCAAAATGGAGATTTCTGTAGGCAGAGGCCTGTAGCTTAGAAT
GGGAGAAAGCCTACCTGACCAGGAGAGCTTGCAAGATTAGAGAAATGGTA
GATTGTGATCTCAGCCAAATGGAGAAGGAACTGGTCCTGCTCCCCCAAGT
GCATCTGATCTTTTAATACTTCCCATGCCACAGATGATGCATCCAGGAGC
AGAGAGAGCAGAAAATTTGGCCCCACAAAGATCACAAACATCGTATCCAA
TAGTAGACAGACGGCTGAGCGTGGCAGCACAGAACTGAGAGGGATCCTCT
AGTGGATCGATAGACTTGTTGGTCAAACCCCTCTGAACACAAATGTCAAT
CAGGCTCCTCAATTCCTCTTGCTTACCTGGAGGTGCCTTAGATAGGAGAA
GTTCAAGCATCTGCTTTGCGTAAGCATAGTTCTGAACATCCATATTTCGT
TTTATGGCAGTGCGAATGCAATTTATTCGGTGCTTTGCCTGCAGAGGCAA
AGAACCTAGATGTCTAGATAGTCTAGCCATCTCATCTTTTGCGCTGAGTG
CTCTTGGGCCTTGGACTTTCTGCAGCCTTGTAATTTCCTGAAGAAGCGTT
ACAGCTATCTTGTATTGAGCACAGATGGTAGCTTGAGCTTTAATATCAGC
TCCACGAGAGTTATCCTTAGCTAGTGCCAGAAAAGCTTCATCAAAACAGG
ATAATGAATCTGGAAGTTGATTCTGCTCAAGGTGAGCAAGTCCAGTCTTA
AAACATATGGGAGCTGCTGCCCCACGTGGAACCTGTCCAGGACGCACAGA
CGTTGGAGTGGGTCCAGAGGAAGTAGGTTTTTCAGACTCTGCAGAGTTTG
GAACTCCAAGAGCACTAAGGTCAAGAGGTTGCGTGGATAGCGGCATTTGA
GCAGGCTGAACTTGAGGCTGTGGCAAACCAACAGCTGGAGCTGAGTATTG
TGGAGGAATAACGCCACCAGGAAGTGCAAGAGACTCAGGAGGAATAGGTT
GTTCAGCGGACTGAGGAGGAACCCCACCACCGGGGAGACCAATATCAGCC
GCAGGTGCATTTACTTGGTCAGGTGGTACCTTTCCACCAACTTCAACCTT
TTGAGGAGTTTGATCCAACTTTGAAAGATAAGATCCAGGAGGAGGCAAAG
CAGCTGCAACCTGGAGGGATGGTATTGTGTTCTGGAAAAAGTCTTCTGGT
ATGGGTCCAGCAGCAGTTCCAACACCTTTGGTTGCAGGAGCTGATTGTGA
TACCAATGCAGGTTGTACCCATGAATCAGTGCCGAAGAGATCTCCAGGGG
CAGAAACTGTGGGATTAGTCACAGATGCACCGGTAGCAGGATAAGGTTGC
TGTTGACTCTGACCAAGATCCTGGCCAGTCCATGATTTTGTCCTGGCTAT
AGGTAGGCCCAAGCCATCACCAAGTCGCTTTGTCG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR010714	Coatomer_asu_C

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0005198	structural molecule activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0030126	COPI vesicle coat

Vocabulary: **Biological Process**
Term	Definition
GO:0006886	intracellular protein transport
GO:0016192	vesicle-mediated transport

Search form

g.arboreum_cottongen_reftransV1_0007121, g.arboreum_cottongen_reftransV1_0007121 (contig) Gossypium arboreum

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