g.arboreum_cottongen_reftransV1_0012644, g.arboreum_cottongen_reftransV1_0012644 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy TrEMBL
Match: W9SBT8_9ROSA (Histone H2B OS=Morus notabilis GN=L484_011774 PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 4.513e-46 Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 2 Query: 239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA Sbjct: 55 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 129
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy TrEMBL
Match: F4YF90_CAMSI (Histone H2B OS=Camellia sinensis PE=2 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 5.549e-46 Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 2 Query: 239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA Sbjct: 47 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 121
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy TrEMBL
Match: A0A068UKK4_COFCA (Histone H2B OS=Coffea canephora GN=GSCOC_T00028170001 PE=3 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 6.341e-46 Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 2 Query: 239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA Sbjct: 57 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 131
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy TrEMBL
Match: S8EFG8_9LAMI (Histone H2B (Fragment) OS=Genlisea aurea GN=M569_03437 PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 6.989e-46 Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 2 Query: 239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA Sbjct: 57 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 131
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy TrEMBL
Match: A0A0B2SXJ1_GLYSO (Histone H2B OS=Glycine soja GN=glysoja_025369 PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 7.331e-46 Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 2 Query: 239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA Sbjct: 48 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 122
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy TrEMBL
Match: F6GV41_VITVI (Histone H2B OS=Vitis vinifera GN=VIT_06s0004g04230 PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 7.501e-46 Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 2 Query: 239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA Sbjct: 55 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 129
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy TrEMBL
Match: A0A061FP74_THECC (Histone H2B OS=Theobroma cacao GN=TCM_043377 PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 7.567e-46 Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 2 Query: 239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA Sbjct: 52 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 126
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy TrEMBL
Match: Q9M3H6_CICAR (Histone H2B OS=Cicer arietinum PE=2 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 7.655e-46 Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 2 Query: 239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA Sbjct: 48 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 122
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy TrEMBL
Match: M1CM33_SOLTU (Histone H2B OS=Solanum tuberosum GN=PGSC0003DMG400027363 PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 9.068e-46 Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 2 Query: 239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA Sbjct: 53 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 127
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy TrEMBL
Match: A9PDD5_POPTR (Histone H2B OS=Populus trichocarpa GN=POPTR_0008s03050g PE=2 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 9.095e-46 Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 2 Query: 239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA Sbjct: 52 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 126
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3) HSP 1 Score: 157.532 bits (397), Expect = 1.174e-47 Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 2 Query: 239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA Sbjct: 56 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 130
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy Swiss-Prot
Match: H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5) HSP 1 Score: 156.762 bits (395), Expect = 3.319e-47 Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 2 Query: 239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEAS+LARYNKKPTITSREIQTAVRLVLPGELA Sbjct: 59 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELA 133
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3) HSP 1 Score: 156.377 bits (394), Expect = 3.375e-47 Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 2 Query: 239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELA Sbjct: 57 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELA 131
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy Swiss-Prot
Match: H2B3_SOLLC (Histone H2B.3 (Fragment) OS=Solanum lycopersicum GN=H2B-3 PE=2 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 3.564e-47 Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 2 Query: 239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463 +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA Sbjct: 46 AVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 120
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy Swiss-Prot
Match: H2B3_MEDTR (Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3) HSP 1 Score: 155.992 bits (393), Expect = 4.411e-47 Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 2 Query: 239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463 SVETYKIYIFKVLKQVHPDIG+SSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELA Sbjct: 47 SVETYKIYIFKVLKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELA 121
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy Swiss-Prot
Match: H2B3_ARATH (Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720 PE=1 SV=3) HSP 1 Score: 154.836 bits (390), Expect = 1.551e-46 Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 2 Query: 239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463 S ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEAS+LARYNKKPTITSREIQTAVRLVLPGELA Sbjct: 60 STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELA 134
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy Swiss-Prot
Match: H2B2_MEDTR (Probable histone H2B.2 OS=Medicago truncatula PE=3 SV=3) HSP 1 Score: 154.451 bits (389), Expect = 2.119e-46 Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 2 Query: 239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL QE+SRLARYNKKPTITSREIQTAVRLVLPGELA Sbjct: 57 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITSREIQTAVRLVLPGELA 131
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy Swiss-Prot
Match: H2B_CAPAN (Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3) HSP 1 Score: 153.295 bits (386), Expect = 5.133e-46 Identity = 72/75 (96.00%), Postives = 75/75 (100.00%), Query Frame = 2 Query: 239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463 S+ETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELA Sbjct: 54 SIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELA 128
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy Swiss-Prot
Match: H2B1_ARATH (Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790 PE=1 SV=3) HSP 1 Score: 152.91 bits (385), Expect = 9.209e-46 Identity = 72/75 (96.00%), Postives = 75/75 (100.00%), Query Frame = 2 Query: 239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463 +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPGELA Sbjct: 57 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELA 131
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy Swiss-Prot
Match: H2B6_ARATH (Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 SV=3) HSP 1 Score: 152.14 bits (383), Expect = 2.101e-45 Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 2 Query: 239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELA Sbjct: 59 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELA 133 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0012644 ID=g.arboreum_cottongen_reftransV1_0012644; Name=g.arboreum_cottongen_reftransV1_0012644; organism=Gossypium arboreum; type=contig; length=465bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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