g.arboreum_cottongen_reftransV1_0017420, g.arboreum_cottongen_reftransV1_0017420 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0017420
Unique Nameg.arboreum_cottongen_reftransV1_0017420
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length2193
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr11chromosomeg.arboreum_cottongen_reftransV1_0017420:1..2193 .
Chr11:29313895..29318046 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0017420 vs. ExPASy TrEMBL
Match: D7MJ54_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_493918 PE=4 SV=1)

HSP 1 Score: 650.973 bits (1678), Expect = 0.000e+0
Identity = 357/526 (67.87%), Postives = 419/526 (79.66%), Query Frame = -1
Query:  484 MEPPKGFLATLWNFICFLPYFXXXXXXXXXXXXIFCSPICLIMTIGNSSVILGLLPYHCYFTYYSIVSTKLLGPFLKLAICXXXXXXXXXXXXXXXXXXXXXXXXXGFLSPMFATFDAVGEGKTNVFIHCFYDGTWSTIKGSFTVVKDFKDVCVHSYYSFMEELRQKNG--QYYEIRFLCLLPALIAAVLGFLVDFPMISLIALCKSPYMLVKGWHRLFHDLVGREGPFLETICVPFAGLAILLWPLAVIGAVLGSIVSSIFLGAYAAVIVYQESSFWYGLCYIVASLSIYDEYSTDVLDMPEGSCLPRPRYRRHR-------NESFSKSDSFR-PPARIDSLTNARLDLNPLQLLEGLFKECHVHGEKMVSEGLITSKDIDDAKSIKGSRVVSIGLPAYCFLQALLRSVDANRLGILLSDN-TEITATNRPKDSFFDWFLNPFLILKEQIRAENLSPEEKDYLGKLVLLCGDAARLKN----IGSPPESERKRAELDALARRLQGITKSVSRYPTFRRHFEEFVN 2016
            MEPP G LA+LW FI F+PYF GLLLLG IKGIIFC  ICLI+ IGNS++ILGLLP H  +T YSI S K LGP LK+ +C+ +P+ +ILW+VV IVGSILGG LYGFLSP+FATFDAVGEGK+N F HCFYDGTWST++GSFTVV DFKDVC HSY+SFM++LR  +    YYEIR L +  A+I AVLG LVDFP+ISL+ALCKSPYML KGWHRLFHDL+GREGPFLET+CVP AGL ILLWPLAV+GAVLGS+VSS+FLGAY  V+ YQESSF++GLCY+VAS+SIYDEYS DVLDMPEGSC PRP YRR+        +   S+ +SF+  P+R  S     +DL PL LLE LF EC  HGE MV++G+I SKDI++AKS KGS+V+S GLPAY  LQ LLRS+ +N  G+LL D  TEIT  NRPKD+FFDWFLNPFLILK+QI A NLS EE++YLGKLVLL GD+ RLK+      SPP +E ++ ELDA ARRLQG+TKSVSRYPTFRRHF E V 
Sbjct:    1 MEPPTGILASLWQFILFIPYFTGLLLLGVIKGIIFCPLICLIVAIGNSAIILGLLPVHAIWTLYSIASAKQLGPILKIFLCLCVPLGVILWLVVSIVGSILGGALYGFLSPIFATFDAVGEGKSNPFFHCFYDGTWSTVQGSFTVVCDFKDVCFHSYFSFMDDLRTPSADRHYYEIRLLQIPGAVIVAVLGILVDFPVISLLALCKSPYMLFKGWHRLFHDLIGREGPFLETMCVPIAGLVILLWPLAVVGAVLGSMVSSVFLGAYGGVVSYQESSFFFGLCYVVASVSIYDEYSNDVLDMPEGSCFPRPIYRRNEEVASTTLSGGLSRPNSFKTTPSRGGSNKGPMIDLKPLDLLEALFVECRRHGEIMVTKGIINSKDIEEAKSSKGSQVISFGLPAYSLLQELLRSIKSNSTGLLLGDGVTEITTRNRPKDAFFDWFLNPFLILKDQIEAANLSVEEEEYLGKLVLLFGDSERLKSSIVESESPPLTELRKGELDAFARRLQGLTKSVSRYPTFRRHFVELVK 526          
BLAST of g.arboreum_cottongen_reftransV1_0017420 vs. ExPASy TrEMBL
Match: A0A0D3C093_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 650.203 bits (1676), Expect = 0.000e+0
Identity = 374/582 (64.26%), Postives = 447/582 (76.80%), Query Frame = -1
Query:  301 MEPPKGFLATLWNFICFLPYFXXXXXXXXXXXXIFCSPICLIMTIGNSSVILGLLPYHCYFTYYSIVSTKLLGPFLKLAICXXXXXXXXXXXXXXXXXXXXXXXXXGFLSPMFATFDAVGEGKTNVFIHCFYDGTWSTIKGSFTVVKDFKDVCVHSYYSFMEELRQKNG---QYYEIRFLCLLPALIAAVLGFLVDFPMISLIALCKSPYMLVKGWHRLFHDLVGREGPFLETICVPFAGLAILLWPLAVIGAVLGSIVSSIFLGAYAAVIVYQESSFWYGLCYIVASLSIYDEYSTDVLDMPEGSCLPRPRYRRHRNE-----SFSKSDSFR-PPARIDSLTNARLDLNPLQLLEGLFKECHVHGEKMVSEGLITSKDIDDAKSIKGSRVVSIGLPAYCFLQALLRSVDANRLGILLSDN-TEITATNRPKDSFFDWFLNPFLILKEQIRAENLSPEEKDYLGKLVLLCGDAARLKNIGSPPESERKRAELDALARRLQGITKSVSRYPTFRRHFEEFVNXXXXXXXXXXXXXXXXXXXXXSHQSKNTVLXXXXXXXXXXXXSQNMSDQESQSVLARDAEI 2016
            MEPP+G L++LW FI F+PYFIGLLLLG +KGI+ C  IC+I+ IGNS++ILGL P H ++T YSI S K LGP LKL +C+ +P  +ILW+VV IVGSILGG +YGFLSP+FATFDAVG GK+N   HCFYDGTWST+KGSFTVV DF+DVC HSY+SFM++LR  +     YYEIR L +  A+IAAVLG L+DFPMISLIAL KSPYML KGW RLFHDL+GREGPFLET+CVP AGL ILLWPL V+GAVLGS+VSS+FLGAYA V+ YQESSF++GLCY+VAS+SIYDEYS DVLDMPEGSC PRP+YRR   E       S+ +SF+  P+R  S     +DL PL LL+ LF EC  HGE MV++G+I SKDI++AKS KGS+V+SIGLPAY  L  LLRS+ +N  G+LL D  TEIT  NRPKD+FFDWFLNPFLILK+QI A NLS EE+DYLGKLVLL GD+ RLK+  SPP +E ++AELDA ARRLQG+TKSVSRYPTFRRHF E V      LS D    ++      S   K TV R FS +SFK+ +S N SDQ+S +   RD +I
Sbjct:    1 MEPPRGILSSLWQFILFIPYFIGLLLLGVLKGIVLCPVICIIVAIGNSAIILGLFPVHGFWTLYSISSAKKLGPILKLFLCLCIPPGIILWLVVSIVGSILGGAVYGFLSPIFATFDAVGVGKSNPLFHCFYDGTWSTVKGSFTVVCDFRDVCFHSYFSFMDDLRTSSADDRHYYEIRLLQIPGAVIAAVLGILLDFPMISLIALFKSPYMLFKGWRRLFHDLIGREGPFLETMCVPIAGLVILLWPLGVVGAVLGSVVSSVFLGAYAGVVSYQESSFFFGLCYVVASVSIYDEYSNDVLDMPEGSCFPRPKYRRKEEEGGANGGLSRPNSFKTTPSRGGSNRGPMIDLKPLDLLDALFVECRQHGEIMVTKGIINSKDIEEAKSSKGSQVISIGLPAYSLLHELLRSIKSNSTGLLLGDGRTEITTRNRPKDTFFDWFLNPFLILKDQIEAANLSEEEEDYLGKLVLLFGDSERLKSSESPPLTELRKAELDAFARRLQGLTKSVSRYPTFRRHFVELVK----KLSNDLDKKHNRFEGGSSRPVKKTVSRIFSQKSFKKKTSDNGSDQDSPNRGFRDVDI 578          
BLAST of g.arboreum_cottongen_reftransV1_0017420 vs. ExPASy TrEMBL
Match: Q84K38_ARATH (Putative uncharacterized protein At5g40640 OS=Arabidopsis thaliana GN=At5g40640 PE=2 SV=1)

HSP 1 Score: 649.432 bits (1674), Expect = 0.000e+0
Identity = 352/526 (66.92%), Postives = 417/526 (79.28%), Query Frame = -1
Query:  484 MEPPKGFLATLWNFICFLPYFXXXXXXXXXXXXIFCSPICLIMTIGNSSVILGLLPYHCYFTYYSIVSTKLLGPFLKLAICXXXXXXXXXXXXXXXXXXXXXXXXXGFLSPMFATFDAVGEGKTNVFIHCFYDGTWSTIKGSFTVVKDFKDVCVHSYYSFMEELRQK--NGQYYEIRFLCLLPALIAAVLGFLVDFPMISLIALCKSPYMLVKGWHRLFHDLVGREGPFLETICVPFAGLAILLWPLAVIGAVLGSIVSSIFLGAYAAVIVYQESSFWYGLCYIVASLSIYDEYSTDVLDMPEGSCLPRPRYRRHRNES-------FSKSDSFR-PPARIDSLTNARLDLNPLQLLEGLFKECHVHGEKMVSEGLITSKDIDDAKSIKGSRVVSIGLPAYCFLQALLRSVDANRLGILLSDN-TEITATNRPKDSFFDWFLNPFLILKEQIRAENLSPEEKDYLGKLVLLCGDAARLKN----IGSPPESERKRAELDALARRLQGITKSVSRYPTFRRHFEEFVN 2016
            MEPP G LA+LW FI F+PYF GLLLLG IKGI+ C  ICL + IGNS++ILGLLP H  +T YSI S K LGP LK+ +C+ +P+ +ILW+VV I+GS+LGG +YGFLSP+FATFDAVGEGK+N F HCFYDGTWST++GSFTVV DFKDVC HSY+SFM++LR    N  YYEIR L +  A+I AVLG LVDFP+ISL+ALCKSPYML KGWHRLFHDL+GREGPFLET+CVP AGL ILLWPLAV+GAVLGS+VSS+FLGAY  V+ YQESSF++GLCY+VAS+SIYDEYS DVLDMPEGSC PRP YRR+   +        S+ +SF+  P+R  S     +DL PL LLE LF EC  HGE MV++G+I SKDI++AKS KGS+V+S GLPAY  L  LLRS+ +N  G+LL D  TEIT  NRPKD+FFDWFLNPFLILK+QI A NLS EE++YLGKLVLL GD+ RLK+      SPP +E ++AELDA ARRLQG+TKSVSRYPTFRRHF E V 
Sbjct:    1 MEPPTGILASLWQFILFIPYFTGLLLLGVIKGIVLCPLICLTVAIGNSAIILGLLPVHAIWTLYSIASAKQLGPILKIFLCLCVPLGVILWLVVSILGSVLGGAIYGFLSPIFATFDAVGEGKSNPFFHCFYDGTWSTVQGSFTVVCDFKDVCFHSYFSFMDDLRTSTANRHYYEIRLLQIPGAVIVAVLGILVDFPVISLLALCKSPYMLFKGWHRLFHDLIGREGPFLETMCVPIAGLVILLWPLAVVGAVLGSVVSSVFLGAYGGVVSYQESSFFFGLCYVVASVSIYDEYSNDVLDMPEGSCFPRPIYRRNEEGASTAFSGGLSRPNSFKTTPSRGGSNKGPMIDLKPLDLLEALFVECRRHGEIMVTKGIINSKDIEEAKSSKGSQVISFGLPAYSLLHELLRSIKSNSTGLLLGDGVTEITTRNRPKDAFFDWFLNPFLILKDQIEAANLSEEEEEYLGKLVLLFGDSERLKSSIVESESPPLTELRKAELDAFARRLQGLTKSVSRYPTFRRHFVELVK 526          
BLAST of g.arboreum_cottongen_reftransV1_0017420 vs. ExPASy TrEMBL
Match: A0A078I0I8_BRANA (BnaA04g10500D protein OS=Brassica napus GN=BnaA04g10500D PE=4 SV=1)

HSP 1 Score: 648.662 bits (1672), Expect = 0.000e+0
Identity = 351/521 (67.37%), Postives = 415/521 (79.65%), Query Frame = -1
Query:  484 MEPPKGFLATLWNFICFLPYFXXXXXXXXXXXXIFCSPICLIMTIGNSSVILGLLPYHCYFTYYSIVSTKLLGPFLKLAICXXXXXXXXXXXXXXXXXXXXXXXXXGFLSPMFATFDAVGEGKTNVFIHCFYDGTWSTIKGSFTVVKDFKDVCVHSYYSFMEELRQKNG---QYYEIRFLCLLPALIAAVLGFLVDFPMISLIALCKSPYMLVKGWHRLFHDLVGREGPFLETICVPFAGLAILLWPLAVIGAVLGSIVSSIFLGAYAAVIVYQESSFWYGLCYIVASLSIYDEYSTDVLDMPEGSCLPRPRYRRHRNE-----SFSKSDSFR-PPARIDSLTNARLDLNPLQLLEGLFKECHVHGEKMVSEGLITSKDIDDAKSIKGSRVVSIGLPAYCFLQALLRSVDANRLGILLSDN-TEITATNRPKDSFFDWFLNPFLILKEQIRAENLSPEEKDYLGKLVLLCGDAARLKNIGSPPESERKRAELDALARRLQGITKSVSRYPTFRRHFEEFVN 2016
            MEPP+GFL++LW FI F+PYF GLLLLG +KGI+ C  IC+I+ IGNS++ILGL P H ++T YSI   K LGP LKL +C+ +P  +ILW+VV IVGSILGG LYGFLSP+FATFDAVG+GK+N   HCFYDGTWST+KGSFTVV DF+DVC HSY+SFM++LR  +     YYEIR L +  ALI AVLG +VDFPMISLIAL KSPYML KGW RLFHDL+GREGPFLET+CVP AGL ILLWPL V+GAVLGS+VSS+FLGAYA V+ YQESSF++GLCY+VAS+SIYDEYS DVLDMPEGSC PRP+YRR   E       S+ +SF+  P+R  S     +DL PL LLE LF EC  HGE +V++G+I  KDI++AKS KGS+V+SIGLPAY  L  LLRS+ +N  G+LL D  TEIT  NRPKD+FFDWFLNPFLILK+QI A NLS EE+DYLGKLVLL GD+ RLK+  SPP +E ++AELDA ARRLQG+TKSVSRYPTFRRHF E V 
Sbjct:    1 MEPPRGFLSSLWQFILFIPYFTGLLLLGVLKGIVLCPVICIIVAIGNSAIILGLFPVHLFWTLYSISCAKQLGPILKLFLCLCIPPGIILWLVVSIVGSILGGALYGFLSPIFATFDAVGQGKSNPLFHCFYDGTWSTVKGSFTVVCDFRDVCFHSYFSFMDDLRTSSADDRHYYEIRLLQIPGALITAVLGIIVDFPMISLIALFKSPYMLFKGWRRLFHDLIGREGPFLETMCVPIAGLVILLWPLGVVGAVLGSVVSSVFLGAYAGVVSYQESSFFFGLCYVVASVSIYDEYSNDVLDMPEGSCFPRPKYRRKEEEGGTNGGLSRPNSFKTTPSRGGSNRGPMIDLKPLDLLEALFVECRQHGEILVTKGIINLKDIEEAKSSKGSQVISIGLPAYSLLHELLRSIKSNSTGLLLGDGRTEITTRNRPKDTFFDWFLNPFLILKDQIEAANLSEEEEDYLGKLVLLFGDSERLKSSESPPLTELRKAELDAFARRLQGLTKSVSRYPTFRRHFVELVK 521          
BLAST of g.arboreum_cottongen_reftransV1_0017420 vs. ExPASy TrEMBL
Match: M4E9V0_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra025556 PE=4 SV=1)

HSP 1 Score: 644.425 bits (1661), Expect = 0.000e+0
Identity = 351/522 (67.24%), Postives = 415/522 (79.50%), Query Frame = -1
Query:  484 MEPPKGFLATLWNFICFLPYFXXXXXXXXXXXXIFCSPICLIMTIGNSSVILGLLPYHCYFTYYSIVSTKLLGPFLKLAICXXXXXXXXXXXXXXXXXXXXXXXXXGFLSPMFATFDAVGEGKTNVFIHCFYDGTWSTIKGSFTVVKDFKDVCVHSYYSFMEELRQKNG---QYYEIRFLCLLPALIAAVLGFLVDFPMISLIALCKSPYMLVKGWHRLFHDLVGREGPFLETICVPFAGLAILLWPLAVIGAVLGSIVSSIFLGAYAAVIVYQESSFWYGLCYIVASLSIYDEYSTDVLDMPEGSCLPRPRYRRHRNE-----SFSKSDSFR-PPARIDSLTNA-RLDLNPLQLLEGLFKECHVHGEKMVSEGLITSKDIDDAKSIKGSRVVSIGLPAYCFLQALLRSVDANRLGILLSDN-TEITATNRPKDSFFDWFLNPFLILKEQIRAENLSPEEKDYLGKLVLLCGDAARLKNIGSPPESERKRAELDALARRLQGITKSVSRYPTFRRHFEEFVN 2016
            MEPP+GFL++LW FI F+PYF GLLLLG +KGI+ C  IC+I+ IGNS++ILGL P H ++T YSI   K LGP LKL +C+ +P  +ILW+VV IVGSILGG LYGFLSP+FATFDAVG+GK+N   HCFYDGTWST+KGSFTVV DF+DVC HSY+SFM++LR  +     YYEIR L +  ALI AVLG L+DFPMISLIAL KSPYML KGW RLFHDL+GREGPFLET+CVP AGL ILLWPL V+GAVLGS+VSS+FLGAYA V+ YQESSF++GLCY+VAS+SIYDEYS DVLDMPEGSC PRP+YRR   E       S+ +SF+  P+R      A  +DL PL LLE LF EC  HGE +V++G+I  KDI++AKS KGS+V+SIGLPAY  L  LLRS+ +N  G+LL D  TEIT  NRPKD+FFDWFLNPFLILK+QI A NLS EE+DYLGKLVLL GD+ RLK+  SPP +E ++AELDA ARRLQG+TKSVSRYPTFRRHF E V 
Sbjct:    1 MEPPRGFLSSLWQFILFIPYFTGLLLLGVLKGIVLCPVICIIVAIGNSAIILGLFPVHLFWTLYSISCAKQLGPILKLFLCLCIPPGIILWLVVSIVGSILGGALYGFLSPIFATFDAVGQGKSNPLFHCFYDGTWSTVKGSFTVVCDFRDVCFHSYFSFMDDLRTSSADDRHYYEIRLLQIPGALITAVLGILLDFPMISLIALFKSPYMLFKGWRRLFHDLIGREGPFLETMCVPIAGLVILLWPLGVVGAVLGSVVSSVFLGAYAGVVSYQESSFFFGLCYVVASVSIYDEYSNDVLDMPEGSCFPRPKYRRKEEEGGTNGGLSRPNSFKTTPSRGGGSNRAPMIDLKPLDLLEALFVECRQHGEILVTKGIINLKDIEEAKSSKGSQVISIGLPAYSLLHELLRSIKSNSTGLLLGDGRTEITTRNRPKDTFFDWFLNPFLILKDQIEAANLSEEEEDYLGKLVLLFGDSERLKSSESPPLTEIRKAELDAFARRLQGLTKSVSRYPTFRRHFVELVK 522          
BLAST of g.arboreum_cottongen_reftransV1_0017420 vs. ExPASy Swiss-Prot
Match: Y3739_ARATH (Uncharacterized membrane protein At3g27390 OS=Arabidopsis thaliana GN=At3g27390 PE=1 SV=2)

HSP 1 Score: 630.558 bits (1625), Expect = 0.000e+0
Identity = 371/590 (62.88%), Postives = 447/590 (75.76%), Query Frame = -1
Query:  301 MEPPKGFLATLWNFICFLPYFXXXXXXXXXXXXIFCSPICLIMTIGNSSVILGLLPYHCYFTYYSIVSTKLLGPFLKLAICXXXXXXXXXXXXXXXXXXXXXXXXXGFLSPMFATFDAVGEGKTNVFIHCFYDGTWSTIKGSFTVVKDFKDVCVHSYYSFMEELRQK--NGQYYEIRFLCLLPALIAAVLGFLVDFPMISLIALCKSPYMLVKGWHRLFHDLVGREGPFLETICVPFAGLAILLWPLAVIGAVLGSIVSSIFLGAYAAVIVYQESSFWYGLCYIVASLSIYDEYSTDVLDMPEGSCLPRPRYRRHRNESFSKSDSFRPPARIDSLTNAR-----------LDLNPLQLLEGLFKECHVHGEKMVSEGLITSKDIDDAKSIKGSRVVSIGLPAYCFLQALLRSVDANRLGILLSDN-TEITATNRPKDSFFDWFLNPFLILKEQIRAENLSPEEKDYLGKLVLLCGDAARLKN----IGSPPESERKRAELDALARRLQGITKSVSRYPTFRRHFEEFVNXXXXXXXXXXXXXXXXXXXXXSHQSKNTVLXXXXXXXXXXXXSQNMSDQESQSVLARDAEI 2016
            MEPP GF A+L+ F+ FLPYFIGLL LG IKGI+ C  +CL++TIGNS+VIL LLP H  +T+YSIVS K +GP LK+ +C+ LP  +ILW +VGI+GS+LGG LYGF SP+FATFDAVGEGK   F HCFYDGTWST++ SFTVV+DFKDVC HSY+S M+EL+Q   + +YYEIR L L  AL+ +VLG LVD P+ISL+A+CKSPYML KGWHRLFHDL+GREGPFLET+CVP AGLAILLWPLAV GAV+GS++SSIFLGAYA V+ YQESSF+YGLCYIVAS+SIYDEYSTD+LD+PEGSC PRP+YRR   E    S    P  R+ S+ NA            +D+ PL LL  LF EC  +GE + ++GLI SKDI++A+S KGS+V+S+GLPAY  L  +LRSV AN  G+LLSD  TEIT  NRPKD FFDWFLNPFLILKEQ++A NLS EE++YLG+LVLL GD  RLK+      SPP +ERKRAELDA ARR+QG+TK+VSRYPTFRRHF   V KLSEDL     +S    S          + R FS RSF+R  S N SDQESQ  ++R+ +I
Sbjct:    1 MEPPIGFRASLFQFLLFLPYFIGLLFLGFIKGIVLCPLVCLVVTIGNSAVILSLLPVHIVWTFYSIVSAKQVGPILKIFLCLCLPAAIILWPIVGILGSVLGGALYGFFSPIFATFDAVGEGKPYQFFHCFYDGTWSTMQRSFTVVRDFKDVCFHSYFSLMDELKQSCPDRKYYEIRLLQLPGALVVSVLGILVDPPVISLVAICKSPYMLFKGWHRLFHDLIGREGPFLETMCVPIAGLAILLWPLAVTGAVIGSVISSIFLGAYAGVVSYQESSFYYGLCYIVASVSIYDEYSTDILDLPEGSCFPRPKYRRKDEEPTPFSG---PVPRLGSVKNASSMRGGSVRVPMIDIKPLDLLNELFVECRRYGEVLATKGLINSKDIEEARSSKGSQVISVGLPAYGLLYEILRSVKANSSGLLLSDGVTEITTMNRPKDVFFDWFLNPFLILKEQMKATNLSEEEEEYLGRLVLLFGDPERLKSSNAISASPPLTERKRAELDAFARRMQGLTKTVSRYPTFRRHFVALVKKLSEDLDLKDNNSAKDESITEPPAPVKIISRIFSQRSFRRKGSVNGSDQESQKGVSRNVDI 587          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0017420 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
D7MJ54_ARALL0.000e+067.87Putative uncharacterized protein OS=Arabidopsis ly... [more]
A0A0D3C093_BRAOL0.000e+064.26Uncharacterized protein OS=Brassica oleracea var. ... [more]
Q84K38_ARATH0.000e+066.92Putative uncharacterized protein At5g40640 OS=Arab... [more]
A0A078I0I8_BRANA0.000e+067.37BnaA04g10500D protein OS=Brassica napus GN=BnaA04g... [more]
M4E9V0_BRARP0.000e+067.24Uncharacterized protein OS=Brassica rapa subsp. pe... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0017420 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3739_ARATH0.000e+062.88Uncharacterized membrane protein At3g27390 OS=Arab... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31133FAMILY NOT NAMEDcoord: 2..573
NoneNo IPR availablePANTHERPTHR31133:SF3SUBFAMILY NOT NAMEDcoord: 2..573
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 34..55
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 174..207
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 109..173
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 253..258
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 28..33
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 208..226
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 227..252
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 56..74
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 259..279
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..27
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 280..573
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 75..108
NoneNo IPR availableTMHMMTMhelixcoord: 87..109
NoneNo IPR availableTMHMMTMhelixcoord: 6..28
NoneNo IPR availableTMHMMTMhelixcoord: 267..289
NoneNo IPR availableTMHMMTMhelixcoord: 33..55
NoneNo IPR availableTMHMMTMhelixcoord: 176..198
NoneNo IPR availableTMHMMTMhelixcoord: 240..262

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0017420 ID=g.arboreum_cottongen_reftransV1_0017420; Name=g.arboreum_cottongen_reftransV1_0017420; organism=Gossypium arboreum; type=contig; length=2193bp
ATCACACCAATTAAGGACTTGAATTCTCAAGAATTTTGCAACTTAAAAGC
AGTGAAGCAGTCAAGTCCAAGTAATTTAGTGAATTACATTCATGCATGGT
TACTTTTGCTTGTTAACCAAACATTTGGAAACATTAACAACTCGAAATGA
ATGAACAAAGGCGGCCGGCCGTTGCATTTATGTCCAAAATCTGACAACTA
TGGACAAATATCAACATCCTAGTCCTACACCATTCGATTTCTACATCTCT
GGCAAGAACTGATTGTGATTCTTGATCGACATCCTATTCCTACATCATTC
GATTTCTGCATCTCTGGCAAGAACTGATTGTGATTCTTGATCAGACATGT
TTTGGCTTGAACTCCGCTTGAAAGATCTGCTGCTAAAAAACCGCAGAACG
GTGTTCTTCGATTGATGAGACCTATTACTAGATCTGCTGCTGTTGCTGCT
GCCACTGTCCTTTGAGAGATCCTCGGATAGTTTGTTAACAAATTCCTCAA
AGTGTCGCCTGAAAGTTGGATACCTCGACACTGATTTAGTAATACCTTGT
AACCGTCGGGCTAATGCATCAAGTTCAGCTCGTTTACGCTCTGATTCTGG
TGGAGACCCAATATTTTTCAACCGTGCTGCATCACCACACAGCAACACTA
ATTTGCCTAAGTAATCCTTTTCCTCCGGGGAAAGATTCTCTGCTCTGATT
TGCTCTTTCAGTATCAAAAAGGGGTTAAGAAACCAATCAAAGAATGAATC
TTTTGGTCGGTTCGTGGCCGTTATTTCTGTATTGTCACTCAGTAATATGC
CCAGTCTATTCGCATCCACAGAGCGCAAGAGTGCCTGAAGAAAGCAATAA
GCCGGTAAGCCGATGCTGACCACTCTACTTCCTTTGATAGACTTGGCATC
ATCGATGTCCTTAGAAGTTATCAGCCCTTCAGACACCATTTTCTCACCAT
GGACATGGCACTCCTTAAATAAGCCCTCGAGTAGCTGGAGTGGGTTCAAA
TCAAGCCTTGCATTTGTAAGTGAATCAATGCGAGCAGGAGGACGGAAGGA
GTCAGATTTAGAGAAGGATTCATTTCTATGCCTACGATACCGAGGCCTGG
GAAGGCAAGATCCTTCAGGCATGTCAAGGACATCAGTGCTGTATTCATCA
TATATGGACAACGAAGCAACGATATAACAAAGCCCATACCAAAACGAGGA
CTCCTGGTAAACAATCACCGCAGCATAGGCACCAAGGAAGATGCTAGACA
CAATTGAGCCCAACACTGCTCCAATGACAGCGAGTGGCCAAAGTAAGATG
GCAAGGCCTGCAAATGGTACACATATTGTCTCCAAGAAAGGGCCTTCTCG
ACCTACAAGGTCATGAAATAATCGATGCCACCCTTTAACGAGCATGTAAG
GACTTTTGCATAAGGCAATAAGTGAGATCATTGGAAAATCAACCAGAAAA
CCAAGCACTGCAGCTATAAGAGCCGGAAGCAGACAAAGGAATCTTATCTC
ATAGTATTGTCCATTTTTCTGTCGTAGTTCTTCCATAAACGAGTAGTAGG
AATGGACACAAACATCTTTGAAATCCTTGACAACAGTAAAGCTGCCCTTG
ATAGTGCTCCAAGTACCATCGTAAAAACAGTGGATAAACACATTGGTCTT
TCCTTCGCCCACAGCGTCAAAAGTGGCAAACATTGGTGAAAGAAAGCCGT
ATAATATTCCCCCTAAGATACTTCCAACAATGCCAACAACCACCCACAAT
ATCAAGACAACCGGTAGGAATATGCAGATAGCGAGCTTCAGAAATGGCCC
TAATAGTTTAGTGCTCACAATGCTATAATAAGTGAAGTAACAATGATAGG
GCAGAAGGCCTAATATGACGGACGAGTTTCCAATCGTCATGATAAGGCAT
ATCGGAGAGCAGAAAATGATTCCTTTAATTGTGCCTAAAAGAAGCAAGCC
AATGAAGTAAGGAAGAAAGCATATAAAGTTCCACAAAGTAGCTAAAAATC
CCTTGGGAGGCTCCATGTTTCGCCTAATATTTTACCTTCCAGATCTTCAT
AAAACTCACTACAATCCCATCCTAGAACTCAACCCCAGAATTTTCCCTGG
AAAATACCACTAAAATCCAAACTTTTATCATATCCCAGATCCAAAAAAGA
TAATAGAAAAAAAAAAGAAAGCAAATAGAAAAACAAAAACCCA
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