g.arboreum_cottongen_reftransV1_0004526, g.arboreum_cottongen_reftransV1_0004526 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy TrEMBL
Match: G7K6S4_MEDTR (Transcription initiation factor TFIID protein, putative OS=Medicago truncatula GN=MTR_5g026660 PE=4 SV=2) HSP 1 Score: 378.252 bits (970), Expect = 4.867e-107 Identity = 297/532 (55.83%), Postives = 368/532 (69.17%), Query Frame = 1 Query: 4 IAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARG-QRMSFLQLQQQTREKCQEIWDRQIQSLSAVXXXXXXXXXXXXXXXXXFAGXXXXXXXXXXXXXXXXXXXXXKVDKADAVKGLKMRRRPYKXXXXXXXXXXXXXXXXLCRLLMDDEDDQXXXXXXXXXAVTEDAGLTFGLQPRIGVESLQRVKKTSIIPKQIVRSTQSNGSYPMNENFVKDTKDIESRIFKGSVSGKLKGMKKNGM-PSTGPLTKVKI-LGDNVK--LFKEKKSSRETFVCGACGQLGHMRTNKHCPKYGEDPETQVEATELEKTPGKSTSLEPSGQSQLKMMKKKLITKSATKIAVVEASEGEKSSTNTKALPLKFKC-STDRPSDKLTSGGTQSSDHPVTSD----PENGAKSAAKVSKIIISNRAKPDEMQVESHKLPVVIRHQVDTDRGQAESHKKSIVIKPPANMERDQVEPHKPSVVIXXXXXXXXXXXXXXXXXXXXXEVIDLDQLSQEGGTYPEYRKTKKIVELSSFEKHGKQESL 1569 IA QTRWHRIA IRKLSSEQAASGVKVDPTTI KYARG QRMSFLQLQQQTREKCQEIWDRQ+QSLS ++G++NESDSE NSDLDSFAGDLENLLDAEEFE+GEE N+ K DK D VK LKMRRR AQ EEEI+DEAAEAAELCRLLMDD D+ +KKKKK K + L LQP+ ++ ++VK QI + Q NGS E+ + D ++ E+ K S S K+ +KKN + P + P K+K+ +G+ +K +FKEKK SRETFVCGACGQLGHMRTNK+CPKYGEDPE Q+E+T++EK GKS+ +PS QSQ ++ KK I+K TK+A VE N+ +PLKFKC ST++ SD+ QSSD PVTSD ++ +AK+SKIII N+ K D+ Q ES K +VIR D RGQ +SHK I I+PPA ++R++ HK V+ KR K+V+DL+ S G T E+RKTK+IVEL++FEKH KQE++ Sbjct: 1140 IANQTRWHRIATIRKLSSEQAASGVKVDPTTIGKYARGGQRMSFLQLQQQTREKCQEIWDRQVQSLSTLNGDDNESDSEGNSDLDSFAGDLENLLDAEEFEDGEEATNDLKRDKGDGVKALKMRRRTTLAQTEEEIQDEAAEAAELCRLLMDD-DEAYRKKKKKGKVMVNPRRLVPKLQPKFVFDNTEQVK-------QITNTLQLNGSNHFKEDALTDHREEENLSAKKSKSVKVNKVKKNDISPISVPNKKIKLNMGEGIKNQVFKEKKPSRETFVCGACGQLGHMRTNKNCPKYGEDPEAQLESTDMEKPTGKSSFGDPSSQSQHQLPSKKSISKIVTKLAPVE---------NSTKIPLKFKCSSTEKSSDRPAVETLQSSDKPVTSDKPVISDSETAKSAKISKIIIPNKVKSDDTQAESLKHAIVIRPPTDPGRGQVDSHKFPIKIRPPAEIDRER--SHKKIVI------------------KRTKDVVDLELDSPGGNTGFEHRKTKRIVELANFEKHRKQETM 1634 HSP 2 Score: 191.045 bits (484), Expect = 5.453e-46 Identity = 93/138 (67.39%), Postives = 116/138 (84.06%), Query Frame = 1 Query: 1888 GAKRKPVELGRYGAEYVPPTKRRRGG--EVGLANILERIVETL-RDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQLLELCDYLLHESSDSL 2292 G +R VELG++G +++PPTKRRRGG EVGLANILE IV+ + +D ++S LFLKPV KK APDYL+I++ PMDLS IR++VR MEYK++E+FRHDVWQI +NAH YNDGRNPGIPP+AD LLE CDYLL+E+ DSL Sbjct: 1753 GKRRSVVELGKFGEDFMPPTKRRRGGGGEVGLANILESIVDAIVKDRYDLSNLFLKPVPKKLAPDYLDIIERPMDLSKIRERVRNMEYKSREDFRHDVWQITFNAHKYNDGRNPGIPPVADMLLEYCDYLLNENDDSL 1890
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy TrEMBL
Match: A0A0A0KA05_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G357030 PE=4 SV=1) HSP 1 Score: 377.481 bits (968), Expect = 8.513e-107 Identity = 287/525 (54.67%), Postives = 356/525 (67.81%), Query Frame = 1 Query: 4 IAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQIQSLSAVXXXXXXXXXXXXXXXXXFAGXXXXXXXXXXXXXXXXXXXXXKVDKADAVKGLKMRRRPYKXXXXXXXXXXXXXXXXLCRLLMDDEDDQXXXXXXXXXAVTEDAGLTFGLQPRIGVESLQRVKKTSIIPKQIVRSTQSNGSYPMNENFVKDTKDIESRIFKGSVSGKLKGMKKNGMPSTGPLT-KVKILGDNVKLFKEKKSSRETFVCGACGQLGHMRTNKHCPKYGEDPETQVEATELEKTPGKSTSLEPSGQSQLKMMKKKLITKSATKIAVVEASEGEKSSTNTKALPLKFKCST-DRPSDKLTSGGTQSSDHPVTSDPENGAKSAAKVSKIIISNRAKPDEMQVESHKLPVVIRHQVDTDRGQAESHKKSIVIKPPANMERDQVE-PHKPSVVIXXXXXXXXXXXXXXXXXXXXXEVIDLDQLSQEGGTYPEYRKTKKIVELSSFEKHGKQESL 1569 IAK TRWHRIAMIR+LSSEQAASGV+VDPTTISKYARGQRMSFLQLQ+QTREKCQEIW+RQIQSLSA DG ENESDSE NSDLDSFAG L E E E + +K D VKGLKMRRRP Q EEEIEDE AEAAELCRLLMDDE ++ ++KKK V +A L+ G Q E ++ + ++ Q + +Y EN +++ K++ES + SGKLK MKKN + K+KI GD VK FKEKKS+RE+FVCG CGQ GHMRTNK+CPKYGED ET E T+ +K K +++PS QS K + KK+ K+ K EA EGEKS+ K LP+KFKCS+ DR SD L+ Q+SD PV SD E G KS KV+KI S + + +++Q ESHK +VIR D + E+HK SIVI+PP NM+R++ E P + + +IR + +K+Q KK+IIKRPKEV DLD+ + +G EYRKTK+IVELSS EKH + S+ Sbjct: 1140 IAKLTRWHRIAMIRRLSSEQAASGVQVDPTTISKYARGQRMSFLQLQRQTREKCQEIWERQIQSLSASDGAENESDSEGNSDLDSFAG-DLENLLDAEEFEDEVDTFEIRHEKTDGVKGLKMRRRPSIVQTEEEIEDEVAEAAELCRLLMDDEAER--RRKKKKNKVMGEAVLSTGFQASFFHEKPEQT-------RHLISIAQPDVTYISKEN-IREQKEVESISNRKEKSGKLKPMKKNYSSEMSLINKKLKISGDKVKNFKEKKSARESFVCGKCGQFGHMRTNKNCPKYGEDLETP-ETTDQDKVSIKLNAMDPSNQSHQKAVVKKVTPKAIAKSFTTEAFEGEKST--AKVLPVKFKCSSADRLSDNLSPALPQTSDLPVNSDNETG-KSIVKVNKITFSKK-RTEDIQFESHKPSIVIR-PPDAKKVSLEAHKPSIVIRPPTNMDRERTEFPRRSATIIRSAVETEKEQLHKKLIIKRPKEV-DLDRSAYDGSVDMEYRKTKRIVELSSLEKHTRHGSM 1646 HSP 2 Score: 218.779 bits (556), Expect = 8.076e-55 Identity = 98/133 (73.68%), Postives = 116/133 (87.22%), Query Frame = 1 Query: 1894 KRKPVELGRYGAEYVPPTKRRRGGEVGLANILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQLLELCDYLLHESSDSL 2292 KRKP+ELGR+ E TKRRRGGEVGL+NILERIVETL+D ++SYLF+KPVSKKEAPDYL+I++ PMDLSTIR+KVRR+EYK ++EFR+DVWQI YNAH+YNDGRNPGIPPLADQLL LCD LL + + L Sbjct: 1755 KRKPIELGRHIPEQASSTKRRRGGEVGLSNILERIVETLKDRFDISYLFIKPVSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRNDVWQIMYNAHLYNDGRNPGIPPLADQLLMLCDNLLKQCDEDL 1887
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy TrEMBL
Match: M4F349_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra035499 PE=4 SV=1) HSP 1 Score: 373.244 bits (957), Expect = 2.609e-105 Identity = 282/546 (51.65%), Postives = 367/546 (67.22%), Query Frame = 1 Query: 1 VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQIQSLSAVXXXXXXXXXXXXXXXXXFAGXXXXXXXXXXXXXXXXXXXXXKVDKADAVKGLKMRRRPYKXXXXXXXXXXXXXXXXLCRLLMDDEDDQXXXXXXXXXAVTEDAGLTFGLQPRIGVESLQRVKKTSIIPKQIVRSTQSNGSYPMNENFVKDTKD--IESRIFKGSVSGKLKGMKKNGMPSTGPLTKVKILGDNVKLFKEKKSSRETFVCGACGQLGHMRTNKHCPKYGEDPETQVEATELEKTPGKSTSLEPSGQSQLKMMK-KKLITKSATKIAVVEASEGEKSSTNTKALPLKFKCS--TDRPSDKLTSGGTQSSDHPVTSDPENGAKSAAKVSKIIISNRAKPDEMQVESHK-LPVVIRHQVDTDRGQAESHKKSI-------------VIKPPANMERDQVEPHKPSVVIXXXXXXXXXXXXXXXXXXXXXEVIDLDQLSQEGGTYPEYRKTKKIVELSSFEKHGKQESLRLME 1581 +IAKQTRWHRIAMIRKLSSEQAASGVKVDPTTI KYARGQRMSFLQ+QQQ REKCQEIWDRQ+ SLSA DG+ENES++EANSDLDSFAG L E E +N +K DK D VKGLKMRRRP + + +EEIEDEA E AELCRLLM DED +KKKKKK KAV E G +P IG + + V+K + I K + +TQ + S+ +NE+ VKDT++ ++S I K + K K +K NG S GPL KVKIL +N+K+FKEKKS+RE FVCGACGQ GHMRTNKHCP+Y E+ + Q E ++EK+ GK ++ E SGQ+++K +K K KSA K+ V +G+ S++ T LPLKF+ SD L S SS+ SD + G K+ +K+SK+ IS++AKP E +VES + LP R +RG++ESHK + +++P +M+RDQ E +P +VI +++QPQKK++IKR KE+ D D S E E RKTK++ EL+ F+ +Q+S R+ E Sbjct: 1128 IIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTIGKYARGQRMSFLQMQQQAREKCQEIWDRQLSSLSAYDGDENESENEANSDLDSFAG-DLENLLDAEEGGEGEESNISKNDKLDGVKGLKMRRRPSQVETDEEIEDEATEYAELCRLLMQDED--QKKKKKKIKAVGEGMGSFPPPRPSIGFQIAEPVRKATFIDKNPI-ATQPDASFLVNESTVKDTRNWQVDSPILK---TPKGKQVKDNGN-SLGPLKKVKILNENLKVFKEKKSARENFVCGACGQYGHMRTNKHCPRYRENTDPQPEGVDMEKSVGKPSTSELSGQAKIKPIKSSKAAPKSAIKVTVDATPKGDSSTSKTGGLPLKFRYGIPAGAMSDTLGSEAPGSSEQAAVSDIDTGTKTTSKISKLKISSKAKPKESKVESDRPLPTYSR-----ERGESESHKPCVSGNQAASSRHTISILQPSLSMDRDQAESRRPHLVI--RPPTEREQPQKKLVIKRSKEITDHDMSSLEESPRFESRKTKRMAELTGFQ---RQQSFRVAE 1655 HSP 2 Score: 194.126 bits (492), Expect = 4.787e-47 Identity = 91/124 (73.39%), Postives = 104/124 (83.87%), Query Frame = 1 Query: 1924 GAEYVPPTKRRRGGEVGLANILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIY-NDGRNPGIPPLADQLLELCDYLLHESSDSL 2292 GA+Y P KRR+ GEVGLANILE IV+TLR EVS LFLKPVSKK APDY +IVK PMDLSTIRDKVR++EY+N+E+FRHDVWQI NAH+Y N+GRNPGI PLADQLLE+CDYLL + D L Sbjct: 1761 GADYAPQPKRRKKGEVGLANILETIVDTLRLKEEVSGLFLKPVSKKGAPDYFDIVKRPMDLSTIRDKVRKIEYRNREQFRHDVWQIQLNAHLYNNNGRNPGIQPLADQLLEICDYLLEDYGDQL 1884
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy TrEMBL
Match: V7CJ31_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G127400g PE=4 SV=1) HSP 1 Score: 372.859 bits (956), Expect = 2.984e-105 Identity = 301/538 (55.95%), Postives = 368/538 (68.40%), Query Frame = 1 Query: 1 VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQIQSLSAVXXXXXXXXXXXXXXXXXFAGXXXXXXXXXXXXXXXXXXXXXKVDKADAVKGLKMRRRPYKXXXXXXXXXXXXXXXXLCRLLMDDEDDQXXXXXXXXXAVTEDAGLTFGLQPRIGVESLQRVKKTSIIPKQIVRSTQSNGSYPMNENFVKDTKDIESRIFKGSVSGKLKGMKKNGM-PSTGPLTKVKI-LGDNVK--LFKEKKSSRETFVCGACGQLGHMRTNKHCPKYGEDPETQVEATELEKTPGKSTSLEPSGQSQ-LKMMKKKLITKSATKIAVVEASEGEKSSTNTKALPLKFKC-STDRPSDKLTSGGTQSSDHPVTSDPENGAKSAAKVSKIIISNRAKPDEMQVESHKLPVVIR---------HQVDTDRGQAESHKKSIVIKPPANMERDQVEPHKPSVVIXXXXXXXXXXXXXXXXXXXXXEVIDLDQLSQEGGTYPEYRKTKKIVELSSFEKHGKQESL 1569 VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQ+QSLSAV+ +ENESDSE NSDLDSFAGDLENLLDAEEFEEGEEG N+ K DK D VKGLKMRRRP AQAEEEIEDEAAEAAELCRLLMDD D+ +KKKKK K E+ L +Q + +S + VK + ++Q +G+ P+ E+ + D ++ E+ K S S K KKN + P + P K+K+ +G+ +K +FKEKK SRETFVCGACGQ GHMRTNK+CPKYGED ETQ+E+ ++EK+ GK ++ S SQ K KK I+KS TKI V+ N+ +PLKFKC S+++ SDK + Q+SD PVTSD E AKS AKV+KIII + KPD+ Q ES K VVIR D RGQ + +K I I+PP ++++Q HK V+ KR KEVI ++ S G T ++RKTK+IVELS+FEK KQ+++ Sbjct: 1142 VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVNADENESDSEGNSDLDSFAGDLENLLDAEEFEEGEEGTNDLKRDKGDGVKGLKMRRRPTLAQAEEEIEDEAAEAAELCRLLMDD-DEADRKKKKKTKVTGEETRLVSKMQSKFAFDSSELVKP-------LTNTSQLDGNNPLKEDVITDLREEENFGAKKSKSLKANKAKKNDITPVSLPNKKIKLNMGEGIKNQVFKEKKPSRETFVCGACGQPGHMRTNKNCPKYGEDLETQLESADMEKSSGK--PIDHSSHSQPTKAPSKKSISKSTTKITPVD---------NSAKIPLKFKCGSSEKSSDKPVTETLQNSDKPVTSDSET-AKS-AKVNKIIIPKKVKPDDTQAESRKHAVVIRPPTESSRGPPPTDAGRGQVDYNKLPIKIRPPTEIDKEQ--SHKKIVI------------------KRTKEVIGVELDSPGGNTGLQHRKTKRIVELSNFEKQKKQDTV 1638 HSP 2 Score: 199.904 bits (507), Expect = 7.880e-49 Identity = 99/138 (71.74%), Postives = 117/138 (84.78%), Query Frame = 1 Query: 1888 GAKRKPVELGRYGAEYVPPTKRRRGG--EVGLANILERIVETL-RDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQLLELCDYLLHESSDSL 2292 G +R ELG+ A+Y+PPTKRRRGG EVGLANILE IV+T+ +D E+SYLF+KPVSKKEAPDYL+I+ PMDLS IR++VR MEYK++E+FRHDVWQI YNAH YNDGRNPGIPPLAD LLE CDYLL+E+ DSL Sbjct: 1748 GKRRSVSELGKLSADYMPPTKRRRGGGGEVGLANILESIVDTIVKDRYELSYLFVKPVSKKEAPDYLDIIDTPMDLSRIRERVRNMEYKSREDFRHDVWQITYNAHKYNDGRNPGIPPLADMLLEYCDYLLNENDDSL 1885
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy TrEMBL
Match: V4SAV3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004140mg PE=4 SV=1) HSP 1 Score: 367.851 bits (943), Expect = 1.106e-104 Identity = 290/528 (54.92%), Postives = 357/528 (67.61%), Query Frame = 1 Query: 1 VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQIQSLSAVXXXXXXXXXXXXXXXXXFAGXXXXXXXXXXXXXXXXXXXXXKVDKADAVKGLKMRRRPYKXXXXXXXXXXXXXXXXLCRLLMDDEDDQXXXXXXXXXAVTEDAGLTFGLQPRIGVESLQRVKKTSIIPKQIVRSTQSNGSYPMNENFVKDTKDIESRIFKGSVSGKLKGMKKNGMPSTGPLTKVKILGDNVKLFKEKKSSRETFVCGACGQLGHMRTNKHCPKYGEDPETQVEATELEKTPGKSTSLEPSGQSQLKMMKKKLITKSATKIAVVEASEGEKSSTNTKALPLKFKCST-DRPSDKLTSGGTQSSDHPVTSD-PENGAKSAAKVSKIIISNRAKPDEMQVESHKLPVVIRHQVDT-DRGQAESHKKSIVIKPPANMERDQVEPHKPSVVIXXXXXXXXXXXXXXXXXXXX--------------------XEVIDLDQLSQEGGTYPEYRKT 1515 +IAKQTRWHRIAMIRKLSSEQAAS V+VDPTTISKYARGQRM FLQLQQQTR K QSLSA D +E SDSE + FAGDLENLLDAEEFEE E + K DK + VKGLKMRR P + QAEEEIED+AAE AELCRLLMDD++ + KKKKKK KA E GL+ Q G+E ++R+KK + K I + Q NGS+ NE +KD K+ ES I K ++SG ++ MKKNG+ G KVKI+ +FKEKKSSR TFVCGACGQ GHMRTNK+CP+Y +PETQ+E +++K+ G T + KKKLI+KSATKIA++EA EGEKSS TK +P+KFKCS+ D+ DK TQSSD TSD E KS KV++I+ISN+ +P+E QVESHK +VIR VDT D+ QAESHK SI+I+PPAN +R+QVE HKPS++IRP D++ + K++IDLD++SQ+G + EYRKT Sbjct: 836 MIAKQTRWHRIAMIRKLSSEQAASAVQVDPTTISKYARGQRMPFLQLQQQTRGK--------FQSLSAADDDEIGSDSEHSDLDS-FAGDLENLLDAEEFEEEESNYDT-KHDKVEGVKGLKMRRCPIQVQAEEEIEDDAAEVAELCRLLMDDDEAKLKKKKKKTKAPVE-GGLSLA-QSISGLEIVERLKKANKPAKHIAITVQPNGSHAANEQ-IKDPKEEESLIAKRNLSGTVQAMKKNGISPVG--KKVKIV-----MFKEKKSSRGTFVCGACGQHGHMRTNKNCPRYRAEPETQLETADMDKSWGNLTLWT---LQLKSLKKKKLISKSATKIALIEAPEGEKSSLKTKVVPVKFKCSSADKLPDKFPVASTQSSDQLSTSDVVETANKSVGKVNRIVISNKPRPEETQVESHKPSIVIRPPVDTVDKSQAESHKPSIIIRPPANTDREQVESHKPSILIRPVTTTDRELVESHKPSIVIRPPADKEREPPQKKIIIKRPKDIIDLDRVSQDGSPH-EYRKT 1339
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: TAF1_ARATH (Transcription initiation factor TFIID subunit 1 OS=Arabidopsis thaliana GN=TAF1 PE=1 SV=1) HSP 1 Score: 359.377 bits (921), Expect = 1.476e-102 Identity = 278/551 (50.45%), Postives = 363/551 (65.88%), Query Frame = 1 Query: 1 VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQIQSLSAVXXXXXXXXXXXXXXXXXFAGXXXXXXXXXXXXXXXXXXXXXKVDKADAVKGLKMRRRPYKXXXXXXXXXXXXXXXXLCRLLMDDEDDQXXXXXXXXXAVTEDAGLTFGLQPRIGVESLQRVKKTSIIPKQIVRSTQSNGSYPMNENFVKDTKDIESRIFKGSVSGKLKGMKKNGMPSTGPLTKVKILGDNVKLFKEKKSSRETFVCGACGQLGHMRTNKHCPKYGEDPETQVEATELEKTPGKSTSLEPSGQSQLKMMKK-KLITKSATKIAVVEASEGEKSSTNTKALPLKFKCS--TDRPSDKLTSGGTQSSDHPVTSDPENGAKSAAKVSKIIISNRAKPDEMQVESHKLPVVIRHQVDTDRGQAESHKKSI---------------------VIKPPANMERDQVEPHKPSVVIXXXXXXXXXXXXXXXXXXXXXEVIDLDQLSQEGGTYPEYRKTKKIVELSSFEKHGKQESLRLME 1581 +IAKQTRWHRIAMIRKLSSEQAASGVKVDPTTI KYARGQRMSFLQ+QQQ REKCQEIWDRQ+ SLSA DG+ENES++EANSDLDSFAG L E E +N +K DK D VKGLKMRRRP + + +EEIEDEA E AELCRLLM DED +KKKKKK K V E G +P I ++S + V+K + + K+ + + Q + S+ +NE+ +KD ++++S I + K K +K+N S G L KVKIL +N+K+FKEKKS+RE FVCGACGQ GHMRTNKHCP+Y E+ E+Q E +++K+ GK +S EPSG +LK +K K KSA K +V EA +G+K S+ T LPLKF+ SDK S SS+ V SD + G KS +K+SK+ IS++AKP E + ES + + +RG++ESHK S+ + +P +M+ DQ E +P +VI +++QPQKK++IKR KE+ D D S E E RKTK++ EL+ F+ +Q+S RL E Sbjct: 1134 IIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTIGKYARGQRMSFLQMQQQAREKCQEIWDRQLLSLSAFDGDENESENEANSDLDSFAG-DLENLLDAEEGGEGEESNISKNDKLDGVKGLKMRRRPSQVETDEEIEDEATEYAELCRLLMQDED--QKKKKKKMKGVGEGMGSYPPPRPNIALQSGEPVRKANAMDKKPI-AIQPDASFLVNESTIKDNRNVDSII----KTPKGKQVKENSN-SLGQLKKVKILNENLKVFKEKKSARENFVCGACGQHGHMRTNKHCPRYRENTESQPEGIDMDKSAGKPSSSEPSGLPKLKPIKNSKAAPKSAMKTSVDEALKGDKLSSKTGGLPLKFRYGIPAGDLSDKPVSEAPGSSEQAVVSDIDTGIKSTSKISKLKISSKAKPKESKGESERRSHSLMPTFSRERGESESHKPSVSGQPLSSTERNQAASSRHTISIPRPSLSMDTDQAESRRPHLVI--RPPTEREQPQKKLVIKRSKEMNDHDMSSLEESPRFESRKTKRMAELAGFQ---RQQSFRLSE 1670 HSP 2 Score: 215.312 bits (547), Expect = 1.084e-55 Identity = 98/128 (76.56%), Postives = 112/128 (87.50%), Query Frame = 1 Query: 1909 ELGRYGAEYVPPTKRRRGGEVGLANILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQLLELCDYLLHESSDSL 2292 + R GAEY P KRR+ GEVGLANILERIV+TLR EVS LFLKPVSKKEAPDYL+IV++PMDLSTIRDKVR++EY+N+E+FRHDVWQI YNAH+YNDGRNPGIPPLADQLLE+CDYLL + D L Sbjct: 1781 DFERDGAEYAPQPKRRKKGEVGLANILERIVDTLRLKEEVSRLFLKPVSKKEAPDYLDIVENPMDLSTIRDKVRKIEYRNREQFRHDVWQIKYNAHLYNDGRNPGIPPLADQLLEICDYLLDDYEDQL 1908
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: TAF1B_ARATH (Transcription initiation factor TFIID subunit 1b OS=Arabidopsis thaliana GN=TAF1B PE=2 SV=1) HSP 1 Score: 234.187 bits (596), Expect = 1.127e-61 Identity = 236/550 (42.91%), Postives = 319/550 (58.00%), Query Frame = 1 Query: 1 VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQIQSLSAVXXXXXXXXXXXXXXXXXFAGXXXXXXXXXXXXXXXXXXXXXKVDKADAVKGLKMRRRPYKXXXXXXXXXXXXXXXXLCRLLMDDEDDQXXXXXXXXXAVTEDAGLTFGLQPRIGVESLQRVKKTSIIPKQIVRSTQSNGSYPM-NENFVKDTKDIESRIFKGSVSGKLKGMKKNGMPSTGPLTKVKILGDNVKLFKEKKSSRETFVCGACGQLGHMRTNKHCPKYGEDPETQVEATELEKTPGKSTSLEPSGQSQLKMM-KKKLITKSATKIAVVEASEGEKSSTNTKALPLKFKCSTDRPSDKLTSGGTQSSDHPVTSDPENGAKSAAKVSKIIISNRAKPDEMQVESHKLPVVIRHQVDTDRGQAESHKKSI---------------------VIKPPANMERDQVEPHKPSVVIXXXXXXXXXXXXXXXXXXXXXEVIDLDQLSQEGGTYPEYRKTKKIVELSSFEKHGKQESLRLME 1581 +IAKQT+ HR AMIRK+SSEQAASG KV PTT+ ++R QRMSFLQLQQQ RE C EIWDRQ SLSA D + NES++EANSDLDSF GDLE+LLDAE+ EGEE N + +K D VKGLKMRR P + + +EEIEDEAAE ELCRLLM DE+D+KK +D G G P R I K+ + +T+ + S+ + NE+ VK TK+++ K S K K +K+ G P KIL +N K+F KK++R FVCGACGQ GHM+TNKHCPKY + E+Q E+ +++K+ GK +S + SG+ L + KK KSATKI+V EA++ S++ T SSD S+ ++G K ++ K+ IS++AKP +VES + +RG++E H S+ V +P ++++DQ E +P VI K+ QKK++IKR KE+ D D S E E RKTK++ EL+ F+ +Q+ LRL E Sbjct: 1040 IIAKQTQRHRTAMIRKISSEQAASGGKVGPTTVGMFSRSQRMSFLQLQQQAREMCHEIWDRQRLSLSACDDDGNESENEANSDLDSFVGDLEDLLDAEDGGEGEESNKSMN-EKLDGVKGLKMRRWPSQVEKDEEIEDEAAEYVELCRLLMQDENDKKK-------KKLKDVGEGIGSFPP------PRSNFEPFIDKKYI-ATEPDASFLIVNESTVKHTKNVDKATSK---SPKDKQVKEIGTPIC---QMKKILKENQKVFMGKKTARANFVCGACGQHGHMKTNKHCPKYRRNTESQPESMDMKKSTGKPSSSDLSGEVWLTPIDNKKPAPKSATKISVNEATKVGDSTSKTPG----------------------SSDVAAVSEIDSGTKLTSR--KLKISSKAKPKASKVESDSPFHSLMPAYSRERGESELHNPSVSGQLLPSTETDQAASSRYTTSVPQPSLSIDKDQAESCRPHRVI--WPPTGKEHSQKKLVIKRLKEITDHDSGSLEETPQFESRKTKRMAELADFQ---RQQRLRLSE 1539 HSP 2 Score: 185.652 bits (470), Expect = 2.908e-46 Identity = 88/129 (68.22%), Postives = 102/129 (79.07%), Query Frame = 1 Query: 1909 ELGRYGAEYVPPTKRRRGGEVGLANILERIVETLR-DNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQLLELCDYLLHESSDSL 2292 + R EY P KRR+ G+VGLANILE IV+TLR VSYLFLKPV+KKEAP+YL IVK PMDLSTIRDKVRRMEY+++++FRHDVWQI +NAH+YNDGRN IPPLAD+LL CD LL E D L Sbjct: 1643 DFERNRTEYAPQPKRRKKGQVGLANILESIVDTLRVKEVNVSYLFLKPVTKKEAPNYLEIVKCPMDLSTIRDKVRRMEYRDRQQFRHDVWQIKFNAHLYNDGRNLSIPPLADELLVKCDRLLDEYRDEL 1771
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: TAF1_ORYSJ (Transcription initiation factor TFIID subunit 1 OS=Oryza sativa subsp. japonica GN=TAF1 PE=2 SV=1) HSP 1 Score: 225.328 bits (573), Expect = 6.674e-59 Identity = 218/530 (41.13%), Postives = 303/530 (57.17%), Query Frame = 1 Query: 4 IAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQIQSLSAVXXXXXXXXXXXXXXXXXFAGXXXXXXXXXXXXXXXXXXXXXKVDKADAVKGLKMRRRPYKXXXXXXXXXXXXXXXXLCRLLMDDEDDQXXXXXXXXXAVTEDAGLTFGLQPRIGVESLQRVKKTSIIPKQIVRSTQSNGSYPMNENFVKDTKDIESRIFKGSVSGKLKGMKKNGMPSTGPLTKVK---ILGDNVKLFKEKKSSR--ETFVCGACGQLGHMRTNKHCPKYGEDPETQVEATELEKTPGKSTSLEPSGQSQLKMMKKKLITKSATKIAVVEASEGEKSSTNTKALPLKFKC-----STDRPSDKLTSGGTQSSDHPVTSDPENGAKSAAKVSKIIISNRAKPDEMQVESHKLPVVIRHQVDTDRGQAESHKKSIVIKPPANMERDQVEPHKPSVVIXXXXXXXXXXXXXXXXXXXXXEVIDLDQLSQEGGTYPEYRKTKKIVELSSFEKHGKQE 1563 I K TRWHRIAM+RKLSSEQAASGV +D +SK+ARGQRMSFLQLQQQT+EKCQEIWDRQIQSLSA+DG EN SD+EANSDLDSFAGDLENLLDAEEF++ + GN + + DK D ++GLKMRR ++Q EEI+D+ AEAA + +LL + + D K+KK+ G + + G Q+++S+ G+ E+ ++ K++E+ +GS+ KL+ K G + + VK I G + FKEK+ +T VCGACGQLGHMRTNK CPKYGEDPET +E++ +S + +Q+K K+L+ K +++ +EG +S K +P+KFKC S DR ++ + SD + +KS KV+KI ISN+ K D+ ++ K S+VI+PPA +E+D P K ++ + +V+ Q E + E RKT+KIVELSSFEK +++ Sbjct: 1110 IDKLTRWHRIAMVRKLSSEQAASGVTMDEIPVSKFARGQRMSFLQLQQQTKEKCQEIWDRQIQSLSAMDGNENGSDTEANSDLDSFAGDLENLLDAEEFDDEDVGNTDIRSDKMDGMRGLKMRRCHTQSQINEEIQDDVAEAALVEKLLEESDSDMKRKKQPVETTNYSTPMYNQGNKMKQGKAG------------QMIKSSVYAGALTPKESIPREAKEVEN-FAEGSLPSKLR--TKTGFDANDDIILVKRKNIPGKDG--FKEKRQGARGDTLVCGACGQLGHMRTNKLCPKYGEDPET----SEMDVNSIRSHPPDIVSNAQIKTSNKRLVAKVSSEAF---ETEGPESIEKAKPVPVKFKCGAPEKSLDR---NMSISASLVSDKRMMD--ATDSKSTGKVNKIKISNKIKYDDY--------------------PPDTPKPSVVIRPPAEVEKDL--PRKKIII-------------------KQPKVLGDQQRPTELRSGQEPRKTRKIVELSSFEKRDRED 1569 HSP 2 Score: 183.341 bits (464), Expect = 1.329e-45 Identity = 87/133 (65.41%), Postives = 104/133 (78.20%), Query Frame = 1 Query: 1894 KRKPVELGRYGAEYVPPTKRRRGGEVGLANILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQLLELCDYLLHESSDSL 2292 +R P ++ EY PP KR RGGEV L+NILE+IV+ LR S+LF KPV+KKEAPDY +I++ PMDL TIRDKVR+MEYKN+E+FRHDV QIA NAH YN R+P IPPLAD+LLELCDYLL ES+D L Sbjct: 1674 RRTPADM----TEYTPPAKRHRGGEVELSNILEKIVDHLR-TMSCSFLFRKPVTKKEAPDYFDIIERPMDLGTIRDKVRKMEYKNREDFRHDVAQIALNAHTYNLNRHPHIPPLADELLELCDYLLEESADVL 1801
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: TAF1_DICDI (Transcription initiation factor TFIID subunit 1 OS=Dictyostelium discoideum GN=taf1 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.478e-12 Identity = 41/104 (39.42%), Postives = 63/104 (60.58%), Query Frame = 1 Query: 1960 GGEVGLANILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQLLELCDYLL 2271 G +V L+NI ERI++ LR N E F V+ K APDY ++K+P+DL+T+RD+ R EYK++ +F + + N YN+ R + P+A++LL LL Sbjct: 2112 GADVELSNIFERILDKLRTNDEF-IAFRHKVTPKLAPDYHKVIKNPIDLTTMRDRNRHWEYKSKNQFIDAIKLMVANCFEYNEKRFSHLLPIAEKLLTSTLQLL 2214
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: TAF1_MESAU (Transcription initiation factor TFIID subunit 1 OS=Mesocricetus auratus GN=TAF1 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 6.314e-12 Identity = 46/117 (39.32%), Postives = 65/117 (55.56%), Query Frame = 1 Query: 1948 KRRRGGEVGLANILERIVETLRD--NTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQLLELCDYLLHESSDSL 2292 +RR V L++ILE I+ +RD NT Y F PV+ K DY I+ PMDL T+R+ VR+ Y ++EEFR + I N+ YN G + ++ +L+LCD L E D L Sbjct: 1371 RRRTDPMVTLSSILESIINDMRDLPNT---YPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN-GPKHSLTQISQSMLDLCDEKLKEKEDKL 1483 HSP 2 Score: 57.7658 bits (138), Expect = 6.272e-7 Identity = 36/109 (33.03%), Postives = 55/109 (50.46%), Query Frame = 1 Query: 1966 EVGLANILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQLLELCDYLLHESSDSL 2292 +V + IL+ IV S+ F PV+KK PDY ++ PMDL TIR + + +Y+++E F DV I N+ YN G A +++ +C L E + L Sbjct: 1499 QVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVSPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYN-GSESQYTKTAQEIVNVCYQTLTEYDEHL 1606
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: TAF1_MOUSE (Transcription initiation factor TFIID subunit 1 OS=Mus musculus GN=Taf1 PE=1 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 6.331e-12 Identity = 46/117 (39.32%), Postives = 65/117 (55.56%), Query Frame = 1 Query: 1948 KRRRGGEVGLANILERIVETLRD--NTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQLLELCDYLLHESSDSL 2292 +RR V L++ILE I+ +RD NT Y F PV+ K DY I+ PMDL T+R+ VR+ Y ++EEFR + I N+ YN G + ++ +L+LCD L E D L Sbjct: 1397 RRRTDPMVTLSSILESIINDMRDLPNT---YPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN-GPKHSLTQISQSMLDLCDEKLKEKEDKL 1509 HSP 2 Score: 57.7658 bits (138), Expect = 6.231e-7 Identity = 36/109 (33.03%), Postives = 55/109 (50.46%), Query Frame = 1 Query: 1966 EVGLANILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQLLELCDYLLHESSDSL 2292 +V + IL+ IV S+ F PV+KK PDY ++ PMDL TIR + + +Y+++E F DV I N+ YN G A +++ +C L E + L Sbjct: 1525 QVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVSPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYN-GPESQYTKTAQEIVNVCHQTLTEYDEHL 1632
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: TAF1_HUMAN (Transcription initiation factor TFIID subunit 1 OS=Homo sapiens GN=TAF1 PE=1 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 6.481e-12 Identity = 46/117 (39.32%), Postives = 65/117 (55.56%), Query Frame = 1 Query: 1948 KRRRGGEVGLANILERIVETLRD--NTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQLLELCDYLLHESSDSL 2292 +RR V L++ILE I+ +RD NT Y F PV+ K DY I+ PMDL T+R+ VR+ Y ++EEFR + I N+ YN G + ++ +L+LCD L E D L Sbjct: 1376 RRRTDPMVTLSSILESIINDMRDLPNT---YPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN-GPKHSLTQISQSMLDLCDEKLKEKEDKL 1488 HSP 2 Score: 57.3806 bits (137), Expect = 7.307e-7 Identity = 36/109 (33.03%), Postives = 56/109 (51.38%), Query Frame = 1 Query: 1966 EVGLANILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQLLELCDYLLHESSDSL 2292 +V + IL+ IV S+ F PV+KK PDY ++ +PMDL TIR + + +Y+++E F DV I N+ YN G A +++ +C L E + L Sbjct: 1504 QVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYN-GPESQYTKTAQEIVNVCYQTLTEYDEHL 1611
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: TAF1L_HUMAN (Transcription initiation factor TFIID subunit 1-like OS=Homo sapiens GN=TAF1L PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.429e-11 Identity = 45/117 (38.46%), Postives = 65/117 (55.56%), Query Frame = 1 Query: 1948 KRRRGGEVGLANILERIVETLRD--NTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQLLELCDYLLHESSDSL 2292 +RR V L++ILE I+ +RD NT + F PV+ K DY I+ PMDL T+R+ VR+ Y ++EEFR + I N+ YN G + ++ +L+LCD L E D L Sbjct: 1395 RRRTDPMVTLSSILESIINDMRDLPNT---HPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKCLYPSREEFREHLELIVKNSATYN-GPKHSLTQISQSMLDLCDEKLKEKEDKL 1507
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: TAF1_DROME (Transcription initiation factor TFIID subunit 1 OS=Drosophila melanogaster GN=Taf1 PE=1 SV=3) HSP 1 Score: 70.4774 bits (171), Expect = 7.844e-11 Identity = 47/116 (40.52%), Postives = 63/116 (54.31%), Query Frame = 1 Query: 1945 TKRRRGGEVGLANILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQLLELCDYLLHESSDSL 2292 +RR V L++ILE I LR +VS FL PVS K+ PDY +V PMDL T+R+ +R+ Y ++E F D+ QI N+ IYN G A ++ C LL E D L Sbjct: 1465 NRRRTDPVVVLSSILEIIHNELRSMPDVS-PFLFPVSAKKVPDYYRVVTKPMDLQTMREYIRQRRYTSREMFLEDLKQIVDNSLIYN-GPQSAYTLAAQRMFSSCFELLAEREDKL 1578
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: SPT7_SCHPO (Transcriptional activator spt7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spt7 PE=1 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 8.022e-11 Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 1 Query: 1954 RRGGEVGLANILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYN 2205 +R G+ L E++V LR TE S FL VSK++APDY ++K PMDL TI ++ + Y +++EF HD+ I N +YN Sbjct: 309 QRIGQEELYEAAEKVVLELRSYTEHSLAFLTKVSKRDAPDYYTVIKEPMDLGTILRNLKNLHYNSKKEFVHDLMLIWSNCFLYN 392 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 21
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0004526 ID=g.arboreum_cottongen_reftransV1_0004526; Name=g.arboreum_cottongen_reftransV1_0004526; organism=Gossypium arboreum; type=contig; length=3025bpback to top |