CSIRO_D5chr01_10042184 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	CSIRO_D5chr01_10042184
Alias	Chr01_10042184
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/C
5' Flanking Sequence	GGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGA AAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCG
3' Flanking Sequence	AGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAATATAGCAGGTCCTAT CTTCCTATATGGGTAGGAAGTGGATCGAAGATGCAGATC
Species	Gossypium hirsutum
Germplasm	Namcala Sicala 40 Sicot 81 Sicala V-2 Sicot 71 Sicala 3-2 Lu Mian 14 Deltapine 90 Coker 315 Tamcot SP37 Delta Opal Sicot 70 Sicot 189 Siokra 1-4 Riverina Paplar Deltapine 16 MCU-5 (PI 694627)
Source Type	RNA-seq
Publication	[view all]
Contact	Zhu, Qian-Hao Wilson, Iain
Comment	Data obtained 2014. SNP location is based on D5 JGI 221 position

Contact

Name

Details

Zhu, Qian-Hao

First name:	Qian-Hao
Last name:	Zhu
Title:	Research Scientist
Institution:	CSIRO
Address:	CSIRO Plant Industry, GPO Box 1600, Canberra, ACT 2601,
Country:	Australia
Email:	Qianhao.Zhu@csiro.au
Phone:	61 2 62464903
Last update:	24-Aug-2014

Wilson, Iain

Description:	SNPs; Disease resistance
First name:	Iain
Last name:	Wilson
Title:	Senior Scientist
Institution:	CSIRO
Address:	Black Mountain Laboratories Clunies Ross Street, Black Mountain, ACT 2601
Country:	Australia
Email:	iain.wilson@csiro.au
Phone:	+61 (0)2 62465211
Last update:	28-Feb-2010

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
D5_07	chromosome	D5_07:10140071..10140271 +	Gossypium raimondii (D5) 'D5-4' genome NSF_v1	n/a
Chr07	chromosome	Chr07:43443318..43443518 -	Gossypium raimondii (D5) 'Grai D502' genome HAU_v1	n/a

Publications


Year	Publication
2014	Zhu QH, Spriggs A, Taylor JM, Llewellyn D, Wilson I. Transcriptome and Complexity-Reduced-DNA Based Identification of Intraspecies Single Nucleotide Polymorphisms in the Polyploid Gossypium hirsutum L. G3 (Bethesda, Md.). 2014 Aug 7.

Germplasm


Stock Name	Type
Namcala	accession
Sicala 40	accession
Sicot 81	accession
Sicala V-2	accession
Sicot 71	accession
Sicala 3-2	accession
Lu Mian 14	accession
Deltapine 90	accession
Coker 315	accession
Tamcot SP37	accession
Delta Opal	accession
Sicot 70	accession
Sicot 189	accession
Siokra 1-4	accession
Riverina Paplar	accession
Deltapine 16	accession
MCU-5 (PI 694627)	accession

Sequence

>CSIRO_D5chr01_10042184 ID=CSIRO_D5chr01_10042184; Name=CSIRO_D5chr01_10042184; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
GGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGT
AGATCGAAGAAAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC
G[A/C]AGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA
ATATAGCAGGTCCTATCTTCCTATATGGGTAGGAAGTGGATCGAAGATGC
AGATC

Search form

CSIRO_D5chr01_10042184 (genetic_marker) Gossypium hirsutum