CSIRO_D5chr04_4899573 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCSIRO_D5chr04_4899573
AliasChr04_4899573
dbSNP IDN/A
TypeSNP
SNP AllelesG/C
5' Flanking SequenceTTAAGAAAAAAATTGATCCAATGTCAAATTACTAGAAGGAATTCACACAAAAAACTACAT TTTGAACAACAAAACATTTAGAAATGATAAAATTATAGTA
3' Flanking SequenceAAAGATTAATATAAATCAGGGACCATTCATGGGAATTTACCTTTTTGTTTTTAAATGTCC GAGCCACTGTTCCGAAAATGTTTACCAATTTTTGCAGGTG
SpeciesGossypium hirsutum
GermplasmSiokra 1-4
MCU-5 (PI 694627)
Source Typerestriction-site associated DNA
RNA-seq and restriction-site associated DNA
Restriction EnzymeEcoRI; ApekI; SbfI
Publication[view all]
ContactZhu, Qian-Hao
Wilson, Iain
CommentData obtained 2014. SNP location is based on D5 JGI 221 position
Contact
NameDetails
Zhu, Qian-Hao
First name:Qian-Hao
Last name:Zhu
Title:Research Scientist
Institution:CSIRO
Address:CSIRO Plant Industry, GPO Box 1600, Canberra, ACT 2601,
Country:Australia
Email:Qianhao.Zhu@csiro.au
Phone:61 2 62464903
Last update:24-Aug-2014
Wilson, Iain
Description:SNPs; Disease resistance
First name:Iain
Last name:Wilson
Title:Senior Scientist
Institution:CSIRO
Address:Black Mountain Laboratories Clunies Ross Street, Black Mountain, ACT 2601
Country:Australia
Email:iain.wilson@csiro.au
Phone:+61 (0)2 62465211
Last update:28-Feb-2010
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018222.1chromosomeCM018222.1:4942723..4942922 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:4887197..4887397 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_08chromosomeD10_08:57510465..57510664 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr1chromosomeDt_chr1:33673412..33673612 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:5133596..5133796 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:5206330..5206531 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:4995106..4995306 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:5269792..5269992 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:5071107..5071306 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:5195231..5195430 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:5191378..5191577 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:5477667..5477867 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:5182764..5182963 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:5358291..5358491 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:4885647..4885845 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeChr04:4991045..4991245 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_04chromosomeChr_04:4288182..4288382 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Germplasm
Stock NameType
Siokra 1-4accession
MCU-5 (PI 694627)accession
Sequence
>CSIRO_D5chr04_4899573 ID=CSIRO_D5chr04_4899573; Name=CSIRO_D5chr04_4899573; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
TTAAGAAAAAAATTGATCCAATGTCAAATTACTAGAAGGAATTCACACAA
AAAACTACATTTTGAACAACAAAACATTTAGAAATGATAAAATTATAGTA
[G/C]AAAGATTAATATAAATCAGGGACCATTCATGGGAATTTACCTTTT
TGTTTTTAAATGTCCGAGCCACTGTTCCGAAAATGTTTACCAATTTTTGC
AGGTG