CSIRO_D5chr04_24906206 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCSIRO_D5chr04_24906206
AliasChr04_24906206
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceATTTTTATTTTATATAATTATAACTTTAAAATTATTGTTTATAATTCGATAAAATAAATT ATGAATTCTTAGATTTTTTATAATTTATTGATATATTTAA
3' Flanking SequenceTTTGTTTAGAATTATTGTTAAACAAAAGTTGTAAAATAATTGAATATTTTAGCTATAATT CAGCGGTCAAATTAGATATTAACCCTTGAGTTAATGTGTC
SpeciesGossypium hirsutum
GermplasmSiokra 1-4
MCU-5 (PI 694627)
Source Typerestriction-site associated DNA
RNA-seq and restriction-site associated DNA
Restriction EnzymeEcoRI; ApekI; SbfI
Publication[view all]
ContactZhu, Qian-Hao
Wilson, Iain
CommentData obtained 2014. SNP location is based on D5 JGI 221 position
Contact
NameDetails
Zhu, Qian-Hao
First name:Qian-Hao
Last name:Zhu
Title:Research Scientist
Institution:CSIRO
Address:CSIRO Plant Industry, GPO Box 1600, Canberra, ACT 2601,
Country:Australia
Email:Qianhao.Zhu@csiro.au
Phone:61 2 62464903
Last update:24-Aug-2014
Wilson, Iain
Description:SNPs; Disease resistance
First name:Iain
Last name:Wilson
Title:Senior Scientist
Institution:CSIRO
Address:Black Mountain Laboratories Clunies Ross Street, Black Mountain, ACT 2601
Country:Australia
Email:iain.wilson@csiro.au
Phone:+61 (0)2 62465211
Last update:28-Feb-2010
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018222.1chromosomeCM018222.1:29922872..29923071 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:24489763..24489963 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_08chromosomeD10_08:34722943..34723144 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr4chromosomeDt_chr4:17959925..17960124 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold4268_D08supercontigscaffold4268_D08:32132..32331 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold4268_D08supercontigscaffold4268_D08:28378..28577 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:32184217..32184416 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:32050935..32051134 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:31302830..31303029 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:29769499..29769698 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:30879871..30880070 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:30682496..30682695 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:31894828..31895027 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:29967628..29967827 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:31576414..31576613 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:25104112..25104311 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeChr04:17257711..17257912 +Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Siokra 1-4accession
MCU-5 (PI 694627)accession
Sequence
>CSIRO_D5chr04_24906206 ID=CSIRO_D5chr04_24906206; Name=CSIRO_D5chr04_24906206; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
ATTTTTATTTTATATAATTATAACTTTAAAATTATTGTTTATAATTCGAT
AAAATAAATTATGAATTCTTAGATTTTTTATAATTTATTGATATATTTAA
[A/G]TTTGTTTAGAATTATTGTTAAACAAAAGTTGTAAAATAATTGAAT
ATTTTAGCTATAATTCAGCGGTCAAATTAGATATTAACCCTTGAGTTAAT
GTGTC